Rroxscaffold_4G00315790

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
40354742 .. 40363022
8281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315790.1

Sequence Viewer

Length: 444 bp
ATGATCAAAGTAGCTCTACTGTGCGCCAATCCAGCAGCTACTCTTAGGCCTATCATGTCTGAAGTAGTGAGTATGCTTGAAGGGCGGACCGCCGTGGAAGAAGTGGTTCTGGATCCAAGCATCCATGGTGATGAAATGACGAGGTTAAGAGCATTTGAAGAGCAGTTTGATCACAGTACTGCACAAGGGAGCTCCGCAAATGGAAGTCATAGCCTCATTCGTTCATCAGATGCACCATGGACGGGTTCTTCTGTTGCTACTACCATGGGCTTTCGACATATGGGAAAGTTGGGGGAGCTGAAGGGCCAGCTGAAGCGAGATGAAGATCTCAATAATGAGAATAACTATGCTGACATTGAAGAAAATGGTTTGGATGAAATCACAGTTCCTTCGTCTGTTACCAGTAATTATGCACACCCACATTCAGCTCGAACTAGGAAGTGA

Protein Analysis

147

Amino Acids

16.04

Weight (kDa)

5.3

Isoelectric Point (pI)

43.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 85, 90, 195
AclWI GGATC 2 cut(s) 107, 120
AcuI CTGAAG 3 cut(s) 81, 320, 332
AfaI GTAC 1 cut(s) 178
AfiI CCNNNNNNNGG 1 cut(s) 242
AgsI TTSAA 3 cut(s) 80, 158, 359
AluBI AGCT 6 cut(s) 14, 38, 192, 298, 310, 428
AluI AGCT 6 cut(s) 14, 38, 192, 298, 310, 428
Alw21I GWGCWC 1 cut(s) 194
AlwI GGATC 2 cut(s) 107, 120
AoxI GGCC 2 cut(s) 47, 304
ApeKI GCWGC 1 cut(s) 35
Asp700I GAANNNNTTC 1 cut(s) 105
AspLEI GCGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 87, 304
AsuHPI GGTGA 1 cut(s) 140
AvaII GGWCC 1 cut(s) 87
BamHI GGATCC 1 cut(s) 112
BanII GRGCYC 1 cut(s) 194
Bbv12I GWGCWC 1 cut(s) 194
BbvI GCAGC 1 cut(s) 47
BceAI ACGGC 1 cut(s) 77
BclI TGATCA 2 cut(s) 3, 169
BfaI CTAG 1 cut(s) 435
BglII AGATCT 1 cut(s) 325
BisI GCNGC 1 cut(s) 36
BlsI GCNGC 1 cut(s) 37
BmcAI AGTACT 1 cut(s) 178
Bme18I GGWCC 1 cut(s) 87
BmgT120I GGNCC 2 cut(s) 87, 304
BmiI GGNNCC 1 cut(s) 114
BmsI GCATC 2 cut(s) 129, 220
BsaBI GATNNNNATC 1 cut(s) 324
BsaJI CCNNGG 4 cut(s) 93, 124, 236, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 242
Bse1I ACTGG 1 cut(s) 402
Bse8I GATNNNNATC 1 cut(s) 324
BseDI CCNNGG 4 cut(s) 93, 124, 236, 264
BseGI GGATG 2 cut(s) 120, 379
BseJI GATNNNNATC 1 cut(s) 324
BseLI CCNNNNNNNGG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 402
BseXI GCAGC 1 cut(s) 47
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 2 cut(s) 49, 306
BsiHKAI GWGCWC 1 cut(s) 194
BslI CCNNNNNNNGG 1 cut(s) 242
BsnI GGCC 2 cut(s) 49, 306
Bsp1286I GDGCHC 1 cut(s) 194
Bsp143I GATC 4 cut(s) 3, 112, 169, 325
Bsp19I CCATGG 3 cut(s) 124, 236, 264
BspACI CCGC 3 cut(s) 85, 90, 195
BspANI GGCC 2 cut(s) 49, 306
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 2 cut(s) 107, 120
BspQI GCTCTTC 1 cut(s) 153
BsrI ACTGG 1 cut(s) 402
BssECI CCNNGG 4 cut(s) 93, 124, 236, 264
BssMI GATC 4 cut(s) 3, 112, 169, 325
BssT1I CCWWGG 3 cut(s) 124, 236, 264
Bst4CI ACNGT 3 cut(s) 21, 176, 385
Bst6I CTCTTC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 308
BstDEI CTNAG 1 cut(s) 44
BstDSI CCRYGG 4 cut(s) 93, 124, 236, 264
BstF5I GGATG 2 cut(s) 120, 379
BstHHI GCGC 1 cut(s) 26
BstKTI GATC 4 cut(s) 6, 115, 172, 328
BstMBI GATC 4 cut(s) 3, 112, 169, 325
BstMWI GCNNNNNNNGC 2 cut(s) 32, 82
BstV1I GCAGC 1 cut(s) 47
BstX2I RGATCY 2 cut(s) 112, 325
BstYI RGATCY 2 cut(s) 112, 325
BsuRI GGCC 2 cut(s) 49, 306
BtgI CCRYGG 4 cut(s) 93, 124, 236, 264
BtsCI GGATG 2 cut(s) 120, 379
Cac8I GCNNGC 1 cut(s) 308
CfoI GCGC 1 cut(s) 26
Cfr13I GGNCC 2 cut(s) 87, 304
CpoI CGGWCCG 1 cut(s) 87
Csp6I GTAC 1 cut(s) 177
CspI CGGWCCG 1 cut(s) 87
CviAII CATG 4 cut(s) 55, 125, 237, 265
CviQI GTAC 1 cut(s) 177
DdeI CTNAG 1 cut(s) 44
DpnI GATC 4 cut(s) 5, 114, 171, 327
DpnII GATC 4 cut(s) 3, 112, 169, 325
Eam1104I CTCTTC 1 cut(s) 153
EarI CTCTTC 1 cut(s) 153
EciI GGCGGA 1 cut(s) 100
Ecl136II GAGCTC 1 cut(s) 192
Eco130I CCWWGG 3 cut(s) 124, 236, 264
Eco147I AGGCCT 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 194
Eco47I GGWCC 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 192
Eco57I CTGAAG 3 cut(s) 81, 320, 332
EcoICRI GAGCTC 1 cut(s) 192
EcoT14I CCWWGG 3 cut(s) 124, 236, 264
EcoT38I GRGCYC 1 cut(s) 194
ErhI CCWWGG 3 cut(s) 124, 236, 264
FaeI CATG 4 cut(s) 58, 128, 240, 268
FatI CATG 4 cut(s) 54, 124, 236, 264
FauNDI CATATG 1 cut(s) 279
FbaI TGATCA 2 cut(s) 3, 169
Fnu4HI GCNGC 1 cut(s) 36
FokI GGATG 2 cut(s) 107, 386
FriOI GRGCYC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 36
FspBI CTAG 1 cut(s) 435
GlaI GCGC 1 cut(s) 25
GluI GCNGC 1 cut(s) 36
HaeIII GGCC 2 cut(s) 49, 306
HhaI GCGC 1 cut(s) 26
Hin1II CATG 4 cut(s) 58, 128, 240, 268
Hin6I GCGC 1 cut(s) 24
HinP1I GCGC 1 cut(s) 24
HphI GGTGA 1 cut(s) 140
Hpy188I TCNGA 2 cut(s) 61, 229
Hpy188III TCNNGA 1 cut(s) 110
HpyAV CCTTC 3 cut(s) 74, 295, 399
HpyCH4III ACNGT 3 cut(s) 21, 176, 385
HpyCH4V TGCA 3 cut(s) 182, 233, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 82
HpyF3I CTNAG 1 cut(s) 44
Hsp92II CATG 4 cut(s) 58, 128, 240, 268
HspAI GCGC 1 cut(s) 24
Ksp22I TGATCA 2 cut(s) 3, 169
Kzo9I GATC 4 cut(s) 3, 112, 169, 325
LguI GCTCTTC 1 cut(s) 153
LmnI GCTCC 3 cut(s) 189, 197, 295
LpnPI CCDG 4 cut(s) 45, 95, 320, 415
Lsp1109I GCAGC 1 cut(s) 47
LweI GCATC 2 cut(s) 129, 220
MaeI CTAG 1 cut(s) 435
MaeIII GTNAC 1 cut(s) 397
MalI GATC 4 cut(s) 5, 114, 171, 327
MboI GATC 4 cut(s) 3, 112, 169, 325
MboII GAAGA 5 cut(s) 110, 170, 240, 335, 371
MflI RGATCY 2 cut(s) 112, 325
MhlI GDGCHC 1 cut(s) 194
MluCI AATT 1 cut(s) 406
MnlI CCTC 2 cut(s) 135, 224
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 146
MslI CAYNNNNRTG 1 cut(s) 129
MspA1I CMGCKG 1 cut(s) 310
MwoI GCNNNNNNNGC 2 cut(s) 32, 82
NcoI CCATGG 3 cut(s) 124, 236, 264
NdeI CATATG 1 cut(s) 279
NdeII GATC 4 cut(s) 3, 112, 169, 325
NlaIII CATG 4 cut(s) 58, 128, 240, 268
NlaIV GGNNCC 1 cut(s) 114
PceI AGGCCT 1 cut(s) 49
PciSI GCTCTTC 1 cut(s) 153
PdmI GAANNNNTTC 1 cut(s) 105
PkrI GCNGC 1 cut(s) 37
Psp124BI GAGCTC 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 2 cut(s) 87, 304
PsuI RGATCY 2 cut(s) 112, 325
PvuII CAGCTG 1 cut(s) 310
RsaI GTAC 1 cut(s) 178
RsaNI GTAC 1 cut(s) 177
RseI CAYNNNNRTG 1 cut(s) 129
Rsr2I CGGWCCG 1 cut(s) 87
RsrII CGGWCCG 1 cut(s) 87
SacI GAGCTC 1 cut(s) 194
SapI GCTCTTC 1 cut(s) 153
SaqAI TTAA 1 cut(s) 146
SatI GCNGC 1 cut(s) 36
Sau3AI GATC 4 cut(s) 3, 112, 169, 325
Sau96I GGNCC 2 cut(s) 87, 304
ScaI AGTACT 1 cut(s) 178
SduI GDGCHC 1 cut(s) 194
SetI ASST 7 cut(s) 16, 40, 146, 194, 300, 312, 430
SfaNI GCATC 2 cut(s) 129, 220
SinI GGWCC 1 cut(s) 87
SmiMI CAYNNNNRTG 1 cut(s) 129
Sse9I AATT 1 cut(s) 406
SseBI AGGCCT 1 cut(s) 49
SsiI CCGC 3 cut(s) 85, 90, 195
SspMI CTAG 1 cut(s) 435
SstI GAGCTC 1 cut(s) 194
StuI AGGCCT 1 cut(s) 49
StyI CCWWGG 3 cut(s) 124, 236, 264
TaaI ACNGT 3 cut(s) 21, 176, 385
TaqI TCGA 2 cut(s) 274, 430
TasI AATT 1 cut(s) 406
TatI WGTACW 1 cut(s) 176
Tru1I TTAA 1 cut(s) 146
Tru9I TTAA 1 cut(s) 146
TseI GCWGC 1 cut(s) 35
TspDTI ATGAA 4 cut(s) 147, 213, 336, 390
VpaK11BI GGWCC 1 cut(s) 87
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 435
ZrmI AGTACT 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.