Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

21324176 .. 21326471

Gene Structure 2296 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0123800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGGCTTCTTCAGCAGTAGCCGCCCCCCGGTCTTCCTCCAAGACCGAGTCCTACGTCGACAACAAGCGCAAGGAGGACGTCCGCCAGGCCAACATCCTCGCCGCCCGCACCGTCGCCGACGCCGTCCGCACCAGCCTCGGCCCCAAAGGCATGGACAAGATGATCTCCACCGCCAACGGTGACGTCATCATCACCAACGACGGCGCCACCATCCTCAACAAGATGGAGGTCCTCCAGCCCGCCGCCAAGATGCTCGTCGAGCTCTCCAAGTCCCAGGACGCCGCCGCCGGGGACGGCACCACCACCGTCGTCGTCATTGCCGGGGCTCTGCTCAAGCAGTGCCTCGTCCTCCTCTCCCACGGCATCCACCCCACGGTGATCTCCGACTCGCTCCACAAGGTCTCGATCAAGGCCGTCGACGTCCTGACCGCCATGGCCCGCCCCGTGGAGCTCTCCGACCGGGAATCGCTTGTTAAATCGGCGAGCACTGCGCTCAACAGCAAGGTCGTGAGTCAGTACTCGACGCTTCTGGCGCCGCTGGCGGTGGATGCAGTGCTGTCAGTGGTGGACCCCGCGAAGCCGGAAATTGTGGACCTGAGGGACATCAAGATCGTGAAGAAGCTCGGCGGAACCGTCGACGATACCGAAACCGTTAAGGGGCTGGTTTTCGATAAGAAGACGAGCCACGCTGCTGGTGGTCCCACAAGGATGGAGAAGGCGAAGATTGCTGTGATTCAGTTCCAGATTTCGCCTCCGAAAACTGATATCGAGCAGAGCATAGTGGTTTCGGACTATACCCAGATGGATAGGATTTTGAAGGAGGAGAGGAATTACATTCTCAGTATGATTAAGAAGATCAGGTCGACGGGTTGTAATGTTCTGCTGATCCAGAAGAGTATTTTGAGGGATGCAGTGACTGATCTGTCATTGCATTACTTGGCCAAAGCCAAGATTTTGGTGGTTAAGGATGTGGAGAGGGATGAGATTGAGTTTATTACCAAGACTCTGAATTGCCTGCCCATTGCGAATATCGAGCATTTCCGGGAGGAGAAGCTGGGGTATGCTGACTTGGTGGAGGAGTCTTCGCTTGGTGATGGCAAGATTGTGAAGATTACTGGGATTCAGAACATGGGTAGGACTACGTCTGTGCTGGTCCGGGGCTCGAACCAGTTGGTGCTTGATGAGGCTGAGAGGAGCTTGCACGATGCTTTGTGTGTGGTTAGGTGTTTGGTGAGCAAGAGGTTTTTGATTGCTGGTGGTGGTGCCCCGGAGATTGAGCTCTCCAGGCAGTTGGGTGCTTGGGCTAAGGTGTTGCAGGGGATGGAGAGTCATTGTGTCAAGTATTTTGCACAAGCACTTGAGGTTATTCCCTATACATTGGCTGAAAATGCTGGGTTGAACCCGATGACCATTGTCACTGAGCTGAGGAACCGCCACAATGAGGGTGAGATCAACACTGGCATTAATGTGAGGAAGGGGCAGATTACCAACATCTGGGACGAGAATGTGGTGCAGCCGCTGCTGGTGAGCACAAGTGCCATCACATTGGCCACAGAGTGTGTGCGGATGATTTTGAAGATCGATGACATAGTAACAGTAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

534

Amino Acids

57.96

Weight (kDa)

7.59

Isoelectric Point (pI)

36.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	38 - 532	2.8e-160	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	922
AatII	GACGTC	3 cut(s)	81, 186, 423
AccB1I	GGYRCC	4 cut(s)	203, 296, 532, 1262
AccB7I	CCANNNNNTGG	1 cut(s)	1494
AccI	GTMKAC	4 cut(s)	57, 417, 636, 863
AccII	CGCG	1 cut(s)	575
AclWI	GGATC	1 cut(s)	880
AcoI	YGGCCR	2 cut(s)	939, 1548
AcyI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
AdeI	CACNNNGTG	1 cut(s)	1557
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
AgsI	TTSAA	3 cut(s)	817, 1399, 1576
AjnI	CCWGG	3 cut(s)	84, 273, 1283
AluBI	AGCT	7 cut(s)	262, 451, 622, 1054, 1197, 1279, 1423
AluI	AGCT	7 cut(s)	262, 451, 622, 1054, 1197, 1279, 1423
Alw21I	GWGCWC	5 cut(s)	264, 453, 488, 1281, 1532
Alw26I	GTCTC	1 cut(s)	406
AlwI	GGATC	1 cut(s)	880
AlwNI	CAGNNNCTG	2 cut(s)	917, 1519
AoxI	GGCC	6 cut(s)	87, 139, 411, 435, 939, 1548
ApeKI	GCWGC	3 cut(s)	689, 1513, 1519
AseI	ATTAAT	1 cut(s)	1464
AspLEI	GCGC	4 cut(s)	69, 206, 493, 535
AspS9I	GGNCC	7 cut(s)	140, 229, 436, 568, 592, 698, 1153
AsuC2I	CCSGG	7 cut(s)	28, 289, 322, 461, 1043, 1157, 1268
AsuHPI	GGTGA	7 cut(s)	184, 191, 388, 1103, 1243, 1457, 1537
AvaII	GGWCC	5 cut(s)	229, 568, 592, 698, 1153
AxyI	CCTNAGG	1 cut(s)	596
BaeGI	GKGCMC	1 cut(s)	1267
BalI	TGGCCA	2 cut(s)	941, 1550
BanI	GGYRCC	4 cut(s)	203, 296, 532, 1262
BanII	GRGCYC	5 cut(s)	264, 328, 453, 1163, 1281
BbsI	GAAGAC	3 cut(s)	24, 683, 1074
Bbv12I	GWGCWC	5 cut(s)	264, 453, 488, 1281, 1532
BbvCI	CCTCAGC	1 cut(s)	1424
BbvI	GCAGC	3 cut(s)	676, 1506, 1525
BccI	CCATC	7 cut(s)	217, 218, 703, 796, 1088, 1315, 1547
BceAI	ACGGC	5 cut(s)	107, 217, 310, 376, 398
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	3 cut(s)	86, 275, 1285
BcnI	CCSGG	7 cut(s)	28, 289, 322, 461, 1043, 1157, 1268
BcoDI	GTCTC	1 cut(s)	406
BfoI	RGCGCY	2 cut(s)	207, 536
BglI	GCCNNNNNGGC	1 cut(s)	147
BmcAI	AGTACT	1 cut(s)	518
Bme18I	GGWCC	5 cut(s)	229, 568, 592, 698, 1153
BmgT120I	GGNCC	7 cut(s)	140, 229, 436, 568, 592, 698, 1153
BmiI	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
BmrI	ACTGGG	1 cut(s)	1125
BmsI	GCATC	5 cut(s)	240, 372, 538, 898, 1195
BmuI	ACTGGG	1 cut(s)	1125
BoxI	GACNNNNGTC	1 cut(s)	1412
BpiI	GAAGAC	3 cut(s)	24, 683, 1074
BpmI	CTGGAG	2 cut(s)	218, 1267
Bpu10I	CCTNAGC	2 cut(s)	1305, 1424
BpuEI	CTTGAG	2 cut(s)	317, 1379
BpuMI	CCSGG	7 cut(s)	28, 289, 322, 461, 1043, 1157, 1268
Bsa29I	ATCGAT	1 cut(s)	1581
BsaHI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
BsaI	GGTCTC	1 cut(s)	406
Bsc4I	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
Bse1I	ACTGG	3 cut(s)	1120, 1168, 1462
Bse21I	CCTNAGG	1 cut(s)	596
Bse3DI	GCAATG	3 cut(s)	315, 926, 1020
BseBI	CCWGG	3 cut(s)	86, 275, 1285
BseCI	ATCGAT	1 cut(s)	1581
BseLI	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
BseMI	GCAATG	3 cut(s)	315, 926, 1020
BseMII	CTCAG	5 cut(s)	587, 853, 1179, 1410, 1415
BseNI	ACTGG	3 cut(s)	1120, 1168, 1462
BseRI	GAGGAG	5 cut(s)	341, 836, 1061, 1091, 1207
BseSI	GKGCMC	1 cut(s)	1267
BseXI	GCAGC	3 cut(s)	676, 1506, 1525
BseYI	CCCAGC	2 cut(s)	1054, 1391
BsgI	GTGCAG	1 cut(s)	1532
Bsh1236I	CGCG	1 cut(s)	575
Bsh1285I	CGRYCG	1 cut(s)	460
BshFI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
BshNI	GGYRCC	4 cut(s)	203, 296, 532, 1262
BshVI	ATCGAT	1 cut(s)	1581
BsiEI	CGRYCG	1 cut(s)	460
BsiHKAI	GWGCWC	5 cut(s)	264, 453, 488, 1281, 1532
BsiSI	CCGG	8 cut(s)	28, 288, 321, 460, 581, 1042, 1156, 1268
BslFI	GGGAC	5 cut(s)	256, 305, 614, 684, 1511
BslI	CCNNNNNNNGG	7 cut(s)	27, 288, 373, 445, 657, 1441, 1494
BsmAI	GTCTC	1 cut(s)	406
BsmFI	GGGAC	5 cut(s)	256, 305, 614, 684, 1511
BsnI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
Bso31I	GGTCTC	1 cut(s)	406
Bsp1286I	GDGCHC	8 cut(s)	264, 328, 453, 488, 1163, 1267, 1281, 1532
Bsp143I	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
Bsp19I	CCATGG	1 cut(s)	432
BspANI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
BspCNI	CTCAG	5 cut(s)	588, 852, 1180, 1411, 1416
BspDI	ATCGAT	1 cut(s)	1581
BspFNI	CGCG	1 cut(s)	575
BspLI	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
BspPI	GGATC	1 cut(s)	880
BspT107I	GGYRCC	4 cut(s)	203, 296, 532, 1262
BspTNI	GGTCTC	1 cut(s)	406
BsrDI	GCAATG	3 cut(s)	315, 926, 1020
BsrI	ACTGG	3 cut(s)	1120, 1168, 1462
BssMI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
BssNI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
BssT1I	CCWWGG	1 cut(s)	432
Bst2UI	CCWGG	3 cut(s)	86, 275, 1285
Bst4CI	ACNGT	7 cut(s)	112, 179, 307, 376, 634, 652, 1597
Bst6I	CTCTTC	1 cut(s)	887
BstACI	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
BstAPI	GCANNNNNTGC	1 cut(s)	1519
BstC8I	GCNNGC	7 cut(s)	106, 240, 439, 484, 540, 1016, 1199
BstDEI	CTNAG	6 cut(s)	596, 839, 1188, 1305, 1419, 1424
BstDSI	CCRYGG	4 cut(s)	358, 372, 432, 444
BstFNI	CGCG	1 cut(s)	575
BstH2I	RGCGCY	2 cut(s)	207, 536
BstHHI	GCGC	4 cut(s)	69, 206, 493, 535
BstKTI	GATC	9 cut(s)	165, 381, 408, 612, 858, 888, 922, 1452, 1581
BstMAI	GTCTC	1 cut(s)	406
BstMBI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
BstMCI	CGRYCG	1 cut(s)	460
BstNI	CCWGG	3 cut(s)	86, 275, 1285
BstPAI	GACNNNNGTC	1 cut(s)	1412
BstSLI	GKGCMC	1 cut(s)	1267
BstUI	CGCG	1 cut(s)	575
BstV1I	GCAGC	3 cut(s)	676, 1506, 1525
BstV2I	GAAGAC	3 cut(s)	24, 683, 1074
BstXI	CCANNNNNNTGG	6 cut(s)	151, 692, 709, 955, 1291, 1546
Bsu15I	ATCGAT	1 cut(s)	1581
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
BsuTUI	ATCGAT	1 cut(s)	1581
BtgI	CCRYGG	4 cut(s)	358, 372, 432, 444
BtsI	GCAGTG	4 cut(s)	344, 486, 558, 918
BtsIMutI	CAGTG	7 cut(s)	344, 486, 558, 567, 918, 1416, 1455
Cac8I	GCNNGC	7 cut(s)	106, 240, 439, 484, 540, 1016, 1199
CaiI	CAGNNNCTG	2 cut(s)	917, 1519
CfoI	GCGC	4 cut(s)	69, 206, 493, 535
Cfr13I	GGNCC	7 cut(s)	140, 229, 436, 568, 592, 698, 1153
ClaI	ATCGAT	1 cut(s)	1581
CseI	GACGC	3 cut(s)	128, 287, 532
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	3 cut(s)	151, 433, 1129
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	6 cut(s)	596, 839, 1188, 1305, 1419, 1424
DinI	GGCGCC	2 cut(s)	205, 534
DpnI	GATC	9 cut(s)	164, 380, 407, 611, 857, 887, 921, 1451, 1580
DpnII	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
DraIII	CACNNNGTG	1 cut(s)	1557
DrdI	GACNNNNNNGTC	1 cut(s)	922
DseDI	GACNNNNNNGTC	1 cut(s)	922
EaeI	YGGCCR	2 cut(s)	939, 1548
Eam1104I	CTCTTC	1 cut(s)	887
EarI	CTCTTC	1 cut(s)	887
EciI	GGCGGA	2 cut(s)	71, 642
Ecl136II	GAGCTC	3 cut(s)	262, 451, 1279
Eco130I	CCWWGG	1 cut(s)	432
Eco24I	GRGCYC	5 cut(s)	264, 328, 453, 1163, 1281
Eco31I	GGTCTC	1 cut(s)	406
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	5 cut(s)	229, 568, 592, 698, 1153
Eco53kI	GAGCTC	3 cut(s)	262, 451, 1279
Eco81I	CCTNAGG	1 cut(s)	596
EcoICRI	GAGCTC	3 cut(s)	262, 451, 1279
EcoO109I	RGGNCCY	1 cut(s)	229
EcoRII	CCWGG	3 cut(s)	84, 273, 1283
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	1 cut(s)	432
EcoT38I	GRGCYC	5 cut(s)	264, 328, 453, 1163, 1281
EgeI	GGCGCC	2 cut(s)	205, 534
EheI	GGCGCC	2 cut(s)	205, 534
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	3 cut(s)	154, 436, 1132
FaiI	YATR	9 cut(s)	152, 434, 779, 795, 845, 1062, 1130, 1374, 1589
FaqI	GGGAC	5 cut(s)	256, 305, 614, 684, 1511
FatI	CATG	3 cut(s)	150, 432, 1128
FauI	CCCGC	4 cut(s)	113, 247, 446, 580
FblI	GTMKAC	4 cut(s)	57, 417, 636, 863
FriOI	GRGCYC	5 cut(s)	264, 328, 453, 1163, 1281
GlaI	GCGC	4 cut(s)	68, 205, 492, 534
GsaI	CCCAGC	2 cut(s)	1058, 1395
GsuI	CTGGAG	2 cut(s)	218, 1267
HaeII	RGCGCY	2 cut(s)	207, 536
HaeIII	GGCC	6 cut(s)	89, 141, 413, 437, 941, 1550
HapII	CCGG	8 cut(s)	28, 288, 321, 460, 581, 1042, 1156, 1268
HgaI	GACGC	3 cut(s)	128, 287, 532
HhaI	GCGC	4 cut(s)	69, 206, 493, 535
Hin1I	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
Hin1II	CATG	3 cut(s)	154, 436, 1132
Hin6I	GCGC	4 cut(s)	67, 204, 491, 533
HinP1I	GCGC	4 cut(s)	67, 204, 491, 533
HincII	GTYRAC	4 cut(s)	58, 418, 637, 864
HindII	GTYRAC	4 cut(s)	58, 418, 637, 864
HinfI	GANTC	9 cut(s)	47, 386, 464, 511, 733, 1003, 1079, 1120, 1327
HpaII	CCGG	8 cut(s)	28, 288, 321, 460, 581, 1042, 1156, 1268
HphI	GGTGA	7 cut(s)	184, 191, 388, 1103, 1243, 1457, 1537
Hpy166II	GTNNAC	6 cut(s)	58, 418, 568, 592, 637, 864
Hpy188I	TCNGA	6 cut(s)	385, 457, 756, 790, 1008, 1125
Hpy188III	TCNNGA	7 cut(s)	403, 424, 508, 607, 613, 742, 889
Hpy8I	GTNNAC	6 cut(s)	58, 418, 568, 592, 637, 864
HpyAV	CCTTC	3 cut(s)	709, 811, 1468
HpyCH4III	ACNGT	7 cut(s)	112, 179, 307, 376, 634, 652, 1597
HpyCH4IV	ACGT	5 cut(s)	54, 78, 183, 420, 1142
HpyCH4V	TGCA	7 cut(s)	551, 911, 931, 1201, 1315, 1349, 1513
HpyF3I	CTNAG	6 cut(s)	596, 839, 1188, 1305, 1419, 1424
HpySE526I	ACGT	5 cut(s)	54, 78, 183, 420, 1142
Hsp92I	GRCGYC	7 cut(s)	78, 120, 183, 204, 279, 420, 533
Hsp92II	CATG	3 cut(s)	154, 436, 1132
HspAI	GCGC	4 cut(s)	67, 204, 491, 533
KasI	GGCGCC	2 cut(s)	203, 532
Kzo9I	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
LmnI	GCTCC	3 cut(s)	396, 448, 1194
Lsp1109I	GCAGC	3 cut(s)	676, 1506, 1525
LweI	GCATC	5 cut(s)	240, 372, 538, 898, 1195
MaeII	ACGT	5 cut(s)	54, 78, 183, 420, 1142
MaeIII	GTNAC	4 cut(s)	179, 913, 1414, 1591
MalI	GATC	9 cut(s)	164, 380, 407, 611, 857, 887, 921, 1451, 1580
MboI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
MboII	GAAGA	9 cut(s)	24, 628, 688, 733, 865, 904, 1074, 1120, 1588
MhlI	GDGCHC	8 cut(s)	264, 328, 453, 488, 1163, 1267, 1281, 1532
MlsI	TGGCCA	2 cut(s)	941, 1550
MluCI	AATT	3 cut(s)	585, 829, 1009
MluNI	TGGCCA	2 cut(s)	941, 1550
Mly113I	GGCGCC	2 cut(s)	204, 533
MlyI	GAGTC	6 cut(s)	56, 380, 520, 997, 1088, 1336
MmeI	TCCRAC	2 cut(s)	408, 480
Mox20I	TGGCCA	2 cut(s)	941, 1550
MscI	TGGCCA	2 cut(s)	941, 1550
MseI	TTAA	5 cut(s)	474, 654, 849, 963, 1464
MslI	CAYNNNNRTG	2 cut(s)	707, 1466
Msp20I	TGGCCA	2 cut(s)	941, 1550
MspA1I	CMGCKG	2 cut(s)	538, 1519
MspI	CCGG	8 cut(s)	28, 288, 321, 460, 581, 1042, 1156, 1268
MvaI	CCWGG	3 cut(s)	86, 275, 1285
MvnI	CGCG	1 cut(s)	575
NarI	GGCGCC	2 cut(s)	204, 533
NciI	CCSGG	7 cut(s)	28, 289, 322, 461, 1043, 1157, 1268
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
NlaIII	CATG	3 cut(s)	154, 436, 1132
NlaIV	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
NmeAIII	GCCGAG	2 cut(s)	117, 603
NmuCI	GTSAC	3 cut(s)	179, 913, 1414
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 630, 642
PfeI	GAWTC	3 cut(s)	464, 733, 1120
PflFI	GACNNNGTC	3 cut(s)	46, 122, 1141
PflMI	CCANNNNNTGG	1 cut(s)	1494
PfoI	TCCNGGA	1 cut(s)	1041
PleI	GAGTC	6 cut(s)	55, 380, 519, 997, 1087, 1335
PluTI	GGCGCC	2 cut(s)	207, 536
PpsI	GAGTC	6 cut(s)	55, 380, 519, 997, 1087, 1335
PpuMI	RGGWCCY	1 cut(s)	229
PshAI	GACNNNNGTC	1 cut(s)	1412
PshBI	ATTAAT	1 cut(s)	1464
Psp124BI	GAGCTC	3 cut(s)	264, 453, 1281
Psp5II	RGGWCCY	1 cut(s)	229
Psp6I	CCWGG	3 cut(s)	84, 273, 1283
PspFI	CCCAGC	2 cut(s)	1054, 1391
PspGI	CCWGG	3 cut(s)	84, 273, 1283
PspN4I	GGNNCC	9 cut(s)	142, 205, 298, 534, 570, 631, 700, 1264, 1430
PspPI	GGNCC	7 cut(s)	140, 229, 436, 568, 592, 698, 1153
PspPPI	RGGWCCY	1 cut(s)	229
PstNI	CAGNNNCTG	2 cut(s)	917, 1519
PsyI	GACNNNGTC	3 cut(s)	46, 122, 1141
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	2 cut(s)	707, 1466
SacI	GAGCTC	3 cut(s)	264, 453, 1281
SalI	GTCGAC	4 cut(s)	56, 416, 635, 862
SaqAI	TTAA	5 cut(s)	474, 654, 849, 963, 1464
Sau3AI	GATC	9 cut(s)	162, 378, 405, 609, 855, 885, 919, 1449, 1578
Sau96I	GGNCC	7 cut(s)	140, 229, 436, 568, 592, 698, 1153
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	6 cut(s)	56, 380, 520, 997, 1088, 1336
SduI	GDGCHC	8 cut(s)	264, 328, 453, 488, 1163, 1267, 1281, 1532
SfaNI	GCATC	5 cut(s)	240, 372, 538, 898, 1195
SfoI	GGCGCC	2 cut(s)	205, 534
SgrDI	CGTCGACG	2 cut(s)	416, 635
SinI	GGWCC	5 cut(s)	229, 568, 592, 698, 1153
SmiMI	CAYNNNNRTG	2 cut(s)	707, 1466
SmlI	CTYRAG	2 cut(s)	332, 1358
SmoI	CTYRAG	2 cut(s)	332, 1358
Sse9I	AATT	3 cut(s)	585, 829, 1009
SspDI	GGCGCC	2 cut(s)	203, 532
SstI	GAGCTC	3 cut(s)	264, 453, 1281
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	7 cut(s)	112, 179, 307, 376, 634, 652, 1597
TaiI	ACGT	5 cut(s)	57, 81, 186, 423, 1145
TaqII	GACCGA	1 cut(s)	59
TasI	AATT	3 cut(s)	585, 829, 1009
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	7 cut(s)	23, 104, 245, 284, 287, 538, 1519
TfiI	GAWTC	3 cut(s)	464, 733, 1120
Tru1I	TTAA	5 cut(s)	474, 654, 849, 963, 1464
Tru9I	TTAA	5 cut(s)	474, 654, 849, 963, 1464
TscAI	CASTG	7 cut(s)	344, 493, 558, 567, 918, 1423, 1462
TseFI	GTSAC	3 cut(s)	179, 913, 1414
TseI	GCWGC	3 cut(s)	689, 1513, 1519
Tsp45I	GTSAC	3 cut(s)	179, 913, 1414
TspRI	CASTG	7 cut(s)	344, 493, 558, 567, 918, 1423, 1462
Tth111I	GACNNNGTC	3 cut(s)	46, 122, 1141
Van91I	CCANNNNNTGG	1 cut(s)	1494
VpaK11BI	GGWCC	5 cut(s)	229, 568, 592, 698, 1153
VspI	ATTAAT	1 cut(s)	1464
XcmI	CCANNNNNNNNNTGG	2 cut(s)	692, 955
XmiI	GTMKAC	4 cut(s)	57, 417, 636, 863
ZraI	GACGTC	3 cut(s)	79, 184, 421
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.