Rh6BG478600

Auxin transport protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
Physical Location & Seq
Forward (+)
68477744 .. 68482267
4524 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG478600.1

Sequence Viewer

Length: 492 bp
ATGGCTGAGGCCTTGGCGAAGCTCACCGACTCTCTCTACTCCGACTCCAAGCCCATCACCGCCACTGATCTCTTGTTTCGGTTGCGCACCGACTCCGACTCCGACTCCATCAGACCGGGTCTCCAGAACCTTCTCCTGATTCTAAAACGCAGCGTCGAGGCCGACGCAGACGGCAAGCTAGGGCTCCAATCATGGACAGATTCGCAAATTCAAGCTGTATATTCCCTCGCCTACGCTGTTGTCTCCTCCTCTCGATCTCTCTCAGACATAGTGGAGCAAGCGGAAGCAATAATTGTGGCCACTGTGCAACTGTCTCTGGAGTTTGCTATATGTTTTCTGGAAAGATCAGATTTCGGCAGCGCAGACATGAGTATTCAGATTTTGAAAATTAACAAGCACTCTGCTGCACTCCTCAATGGAAGACAAAGTCAGTTTGGTTGGGTTATTGGATCTCATGTTAAGGACGAATTGAAAAACTCAAATTGGTTTTGA

Protein Analysis

163

Amino Acids

17.91

Weight (kDa)

4.95

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 86
AciI CCGC 2 cut(s) 60, 281
AclWI GGATC 1 cut(s) 457
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 207
AgsI TTSAA 3 cut(s) 212, 385, 472
AluBI AGCT 3 cut(s) 22, 178, 215
AluI AGCT 3 cut(s) 22, 178, 215
Alw26I GTCTC 3 cut(s) 125, 247, 318
AlwI GGATC 1 cut(s) 457
AoxI GGCC 3 cut(s) 9, 159, 297
ApeKI GCWGC 3 cut(s) 150, 357, 404
ApoI RAATTY 1 cut(s) 207
AspLEI GCGC 2 cut(s) 87, 362
AsuC2I CCSGG 1 cut(s) 117
AsuHPI GGTGA 2 cut(s) 16, 49
BalI TGGCCA 1 cut(s) 299
BanII GRGCYC 1 cut(s) 186
BbsI GAAGAC 1 cut(s) 427
BbvCI CCTCAGC 1 cut(s) 6
BbvI GCAGC 3 cut(s) 162, 369, 391
BccI CCATC 2 cut(s) 62, 116
BceAI ACGGC 1 cut(s) 187
BcnI CCSGG 1 cut(s) 117
BcoDI GTCTC 3 cut(s) 125, 247, 318
BfaI CTAG 1 cut(s) 179
BisI GCNGC 3 cut(s) 151, 358, 405
BlsI GCNGC 3 cut(s) 152, 359, 406
Bme1390I CCNGG 1 cut(s) 117
BmiI GGNNCC 1 cut(s) 185
BmrFI CCNGG 1 cut(s) 117
BpiI GAAGAC 1 cut(s) 427
BpmI CTGGAG 2 cut(s) 107, 338
Bpu10I CCTNAGC 1 cut(s) 6
BpuMI CCSGG 1 cut(s) 117
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 1 cut(s) 12
BsaXI ACNNNNNCTCC 8 cut(s) 29, 59, 83, 89, 105, 113, 119, 135
BseDI CCNNGG 1 cut(s) 12
BseMII CTCAG 1 cut(s) 276
BseRI GAGGAG 3 cut(s) 235, 238, 401
BseXI GCAGC 3 cut(s) 162, 369, 391
BsgI GTGCAG 1 cut(s) 390
BshFI GGCC 3 cut(s) 11, 161, 299
BsiSI CCGG 1 cut(s) 116
BsmAI GTCTC 3 cut(s) 125, 247, 318
BsnI GGCC 3 cut(s) 11, 161, 299
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 186
Bsp143I GATC 4 cut(s) 67, 254, 344, 449
BspACI CCGC 2 cut(s) 60, 281
BspANI GGCC 3 cut(s) 11, 161, 299
BspCNI CTCAG 1 cut(s) 275
BspLI GGNNCC 1 cut(s) 185
BspPI GGATC 1 cut(s) 457
BspTNI GGTCTC 1 cut(s) 125
BssECI CCNNGG 1 cut(s) 12
BssMI GATC 4 cut(s) 67, 254, 344, 449
BssT1I CCWWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 304, 312
BstC8I GCNNGC 2 cut(s) 176, 279
BstDEI CTNAG 2 cut(s) 6, 262
BstHHI GCGC 2 cut(s) 87, 362
BstKTI GATC 4 cut(s) 70, 257, 347, 452
BstMAI GTCTC 3 cut(s) 125, 247, 318
BstMBI GATC 4 cut(s) 67, 254, 344, 449
BstSCI CCNGG 1 cut(s) 115
BstV1I GCAGC 3 cut(s) 162, 369, 391
BstV2I GAAGAC 1 cut(s) 427
BstX2I RGATCY 1 cut(s) 449
BstYI RGATCY 1 cut(s) 449
BsuRI GGCC 3 cut(s) 11, 161, 299
BtsIMutI CAGTG 2 cut(s) 63, 300
Cac8I GCNNGC 2 cut(s) 176, 279
CfoI GCGC 2 cut(s) 87, 362
CseI GACGC 2 cut(s) 142, 173
CspCI CAANNNNNGTGG 2 cut(s) 276, 311
CviAII CATG 3 cut(s) 192, 367, 455
CviJI RGCY 9 cut(s) 5, 11, 22, 52, 161, 178, 184, 215, 299
CviKI_1 RGCY 9 cut(s) 5, 11, 22, 52, 161, 178, 184, 215, 299
DdeI CTNAG 2 cut(s) 6, 262
DpnI GATC 4 cut(s) 69, 256, 346, 451
DpnII GATC 4 cut(s) 67, 254, 344, 449
EaeI YGGCCR 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 12
Eco147I AGGCCT 1 cut(s) 11
Eco24I GRGCYC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 125
EcoT14I CCWWGG 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 186
ErhI CCWWGG 1 cut(s) 12
FaeI CATG 3 cut(s) 195, 370, 458
FaiI YATR 7 cut(s) 193, 220, 269, 329, 331, 368, 456
FatI CATG 3 cut(s) 191, 366, 454
Fnu4HI GCNGC 3 cut(s) 151, 358, 405
FriOI GRGCYC 1 cut(s) 186
Fsp4HI GCNGC 3 cut(s) 151, 358, 405
FspBI CTAG 1 cut(s) 179
FspI TGCGCA 1 cut(s) 86
GlaI GCGC 2 cut(s) 86, 361
GluI GCNGC 3 cut(s) 151, 358, 405
GsuI CTGGAG 2 cut(s) 107, 338
HaeIII GGCC 3 cut(s) 11, 161, 299
HapII CCGG 1 cut(s) 116
HgaI GACGC 2 cut(s) 142, 173
HhaI GCGC 2 cut(s) 87, 362
Hin1II CATG 3 cut(s) 195, 370, 458
Hin6I GCGC 2 cut(s) 85, 360
HinP1I GCGC 2 cut(s) 85, 360
HinfI GANTC 7 cut(s) 29, 44, 92, 98, 104, 139, 200
HpaII CCGG 1 cut(s) 116
HphI GGTGA 2 cut(s) 16, 49
Hpy188I TCNGA 7 cut(s) 43, 97, 103, 113, 265, 349, 378
Hpy188III TCNNGA 5 cut(s) 124, 136, 252, 317, 338
Hpy99I CGWCG 2 cut(s) 158, 167
HpyAV CCTTC 1 cut(s) 140
HpyCH4III ACNGT 2 cut(s) 304, 312
HpyCH4V TGCA 2 cut(s) 307, 407
HpyF3I CTNAG 2 cut(s) 6, 262
Hsp92II CATG 3 cut(s) 195, 370, 458
HspAI GCGC 2 cut(s) 85, 360
Kzo9I GATC 4 cut(s) 67, 254, 344, 449
LmnI GCTCC 2 cut(s) 189, 274
LpnPI CCDG 5 cut(s) 129, 137, 149, 302, 323
Lsp1109I GCAGC 3 cut(s) 162, 369, 391
MaeI CTAG 1 cut(s) 179
MalI GATC 4 cut(s) 69, 256, 346, 451
MboI GATC 4 cut(s) 67, 254, 344, 449
MboII GAAGA 1 cut(s) 432
MflI RGATCY 1 cut(s) 449
MhlI GDGCHC 1 cut(s) 186
MlsI TGGCCA 1 cut(s) 299
MluCI AATT 5 cut(s) 207, 291, 387, 467, 481
MluNI TGGCCA 1 cut(s) 299
MlyI GAGTC 5 cut(s) 23, 38, 86, 92, 98
MmeI TCCRAC 3 cut(s) 66, 120, 126
MnlI CCTC 5 cut(s) 151, 236, 256, 259, 422
Mox20I TGGCCA 1 cut(s) 299
MscI TGGCCA 1 cut(s) 299
MseI TTAA 2 cut(s) 390, 459
Msp20I TGGCCA 1 cut(s) 299
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 117
NciI CCSGG 1 cut(s) 117
NdeII GATC 4 cut(s) 67, 254, 344, 449
NlaIII CATG 3 cut(s) 195, 370, 458
NlaIV GGNNCC 1 cut(s) 185
NsbI TGCGCA 1 cut(s) 86
PceI AGGCCT 1 cut(s) 11
PfeI GAWTC 2 cut(s) 139, 200
PflFI GACNNNGTC 2 cut(s) 117, 426
PkrI GCNGC 3 cut(s) 152, 359, 406
PleI GAGTC 5 cut(s) 23, 38, 86, 92, 98
PpsI GAGTC 5 cut(s) 23, 38, 86, 92, 98
PspN4I GGNNCC 1 cut(s) 185
PsuI RGATCY 1 cut(s) 449
PsyI GACNNNGTC 2 cut(s) 117, 426
SaqAI TTAA 2 cut(s) 390, 459
SatI GCNGC 3 cut(s) 151, 358, 405
Sau3AI GATC 4 cut(s) 67, 254, 344, 449
SchI GAGTC 5 cut(s) 23, 38, 86, 92, 98
ScrFI CCNGG 1 cut(s) 117
SduI GDGCHC 1 cut(s) 186
SetI ASST 4 cut(s) 24, 132, 180, 217
Sse9I AATT 5 cut(s) 207, 291, 387, 467, 481
SseBI AGGCCT 1 cut(s) 11
SsiI CCGC 2 cut(s) 60, 281
SspMI CTAG 1 cut(s) 179
StuI AGGCCT 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 115
StyI CCWWGG 1 cut(s) 12
TaaI ACNGT 2 cut(s) 304, 312
TaqI TCGA 2 cut(s) 156, 253
TasI AATT 5 cut(s) 207, 291, 387, 467, 481
TfiI GAWTC 2 cut(s) 139, 200
Tru1I TTAA 2 cut(s) 390, 459
Tru9I TTAA 2 cut(s) 390, 459
TscAI CASTG 2 cut(s) 70, 307
TseI GCWGC 3 cut(s) 150, 357, 404
TspRI CASTG 2 cut(s) 70, 307
Tth111I GACNNNGTC 2 cut(s) 117, 426
XapI RAATTY 1 cut(s) 207
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.