Rw5G021250

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
28412664 .. 28417529
4866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021250.1

Sequence Viewer

Length: 2178 bp
ATGACTCGCATGCAAAGATTAATGCTAAGGAGCTGCAATTTAGTTGGATCTATCCCTGATTATTTAGCAATGATGCCAAACCTGGAGATATTAGATCTCAGCTTCAATGGATTGATAGGAAAAATCCCTGATTCTATTGGAACTCTGCCCTCCTTGAAGTACTTGTATCTGACAGGTAATTCCCTCACTGGGTCTATTCCACACTGGATCATGAACAGAGATAGTGGCTCCCAGATAGATATTTCTTACAACGATCTTTCAGAGACTGAGGCACATTCTTGTACAGAAACTCAGCTGAACTTGTTCAAAAGCTTTTCTGCACAGAACAACTTCTTATTTCAAGAGTGCCTGGAGAGCACTTCATGTCCAAAAGATCAGTACTCATTGCATATAAATTGTGGTGGGAAAAACACCACCATTGGAGAAATCAACTTTGAAGGTGATCAAGTCCCAGGGGGTGCATCAAAGTTCGTTGCTGCTGGAGCTAATTGGGGATTCAGTAGCACTGGACATTTTTGGGATACTGTCACCTCTCAAAACTACATTGAAAATAATAATGTATCTATACTCGGAATGAACAACTTTGAGTTGTACACAAATGCACGCCTCTCACCTCTTTCTCTCACGTACTACGTACGCTGCTTGGCAAATGGAAACTATAGTGTGAGCCTTCACTTTGCAGAGATAATAATCAGAGGCAACAGATCTTTTCACAGTCTTGGAAGACGGATATTTGATATTTATATCCAGGAGAATCTGGTGGTGAAGGATTTTGACATTGAAGAGGCAGCAGGAGGGGTTGATACAGTAGTCATACTGCAATTTTTTGTTTCCGTCAGGGAAAAAACTTTACAAATCCGATTTCATTGGTCCGGGAAAGGCACAACAGCTTCCCCAAAGAGAGGAGTATATGGTCCACTTATATCAGCTATCTCCATAGAGTTAGCTCATGACAGGAAAAAGAAGGTACTTATTGTGGTTGCAGCTTCAGCTGGAGGTTCCTTTTTGTGTCTTGTTTTCTTGATCTTAGGCATTCTTTGGTGGAGAGGCCGTATGGATAGCAAGACATCACGGGGAAAAGCTCATAGAGGACTCGATATGCATACAAGCCTTTTCACCTTCAAGCAAATTAAAGCTGCTACTAACAACTTTGATCTGGTAAACAAAATTGGAGAAGGTGGTTTTGGGGCTGTCTACAAGGGGGTATTATTGGATGGTACAGTAGTTGCGGTTAAGCAACTATCTTCAAAATCGAAGCAGGGAAATCGCGAATTTGTGAACGAAATAGGCATGATATCTAGTTTGCAACATCCAAATCTTGTTAGATTGTATGGATCCTGTATTGAAGCAAATGAACTACTGTTGGTTTATGAATACATGGAAAATAATAGCCTTGCACGTGCTTTGTTTGGTCCAGAGGAAGGTCCAGTAAGATTAGACTGGCCTACAAGGCAGAGAATATGTATAGGCATAGCAAAAGGTCTGGCTTTTTTGCATGAGGAATCAGCACTTAAGGTTGTACATAGGGACATCAAAACAACGAATGTGCTATTGGACCAAGACCTTAATGCTAAGATCTCGGATTTTGGTCTGGCCAAGCTTGACGAAGAAGAGAACACCCACATTAGCACCAGAGTTGCTGGAACTATAGGATACATGGCGCCAGAATATGCACTATGGGGTTATTTAACCTTCAAAGCAGATGTCTTCAGTTTTGGTGTTGTTGCATTAGAAATAGTTGCTGGAAGAAACAACATGAAATTTCGACCAAATGAGAATTTTGTAGGCCTTGTGGATTGGGCTCTTGTTTTACAACAAAAAGAGAGTTTAGTGGAACTGGTGGATCCAAGGTTAGGATTGGATTTCAGTAAGGAAGAGGCGGTTAGAATGGTCAAAGTAGCTCTGCTATGCATCAATCCGGCAGCTGCACTTAGGCCTAACATGTCTGCAGTCGTGAGTATGCTTGAAGGGCGAGCTCCTGTCGATGAATTGATTATGGATCCAAGTATATATAGTGAAGAAATGAGGTTAACAGCATTGAGAAATCCGTTTGAGCAGATTGCAGAAGAGAGTGCAGGTGGAACTAAGAGCTTGATACATTCATCAGATGCATCATGGAATGGTTCTTCTGCTCCTACAACATCTTCTGATCTCTATAAAATCAGTCCTAGTTGTTAG

Protein Analysis

725

Amino Acids

80.14

Weight (kDa)

6.06

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 3 - 62 9.8e-09 Leucine rich repeat
LRR_8 PF13855 26 - 86 7.5e-08 Leucine rich repeat
LRR_4 PF12799 26 - 63 2.4e-06 Leucine Rich repeats (2 copies)
Malectin PF11721 128 - 311 5.2e-37 Malectin domain
Pkinase PF00069 385 - 587 1.9e-45 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 386 - 654 1.5e-46 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 2066
Acc36I ACCTGC 1 cut(s) 2066
AccB1I GGYRCC 1 cut(s) 1660
AccI GTMKAC 1 cut(s) 1194
AccII CGCG 1 cut(s) 1269
AciI CCGC 2 cut(s) 1229, 1880
AclWI GGATC 8 cut(s) 55, 215, 1329, 1342, 1838, 1851, 1994, 2007
AcoI YGGCCR 1 cut(s) 1593
AcsI RAATTY 3 cut(s) 1271, 1760, 1777
AcuI CTGAAG 2 cut(s) 972, 1693
AcvI CACGTG 1 cut(s) 1400
AcyI GRCGYC 1 cut(s) 1661
AfaI GTAC 9 cut(s) 161, 283, 380, 593, 629, 636, 969, 1219, 1521
AfiI CCNNNNNNNGG 4 cut(s) 189, 902, 1421, 1853
AflII CTTAAG 1 cut(s) 1511
AflIII ACRYGT 1 cut(s) 1941
AjnI CCWGG 4 cut(s) 81, 348, 451, 747
AjuI GAANNNNNNNTTGG 4 cut(s) 1167, 1199, 1535, 1567
Alw21I GWGCWC 2 cut(s) 359, 1978
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 8 cut(s) 55, 215, 1329, 1342, 1838, 1851, 1994, 2007
AlwNI CAGNNNCTG 1 cut(s) 266
AoxI GGCC 5 cut(s) 1048, 1442, 1593, 1786, 1934
ApeKI GCWGC 8 cut(s) 33, 476, 639, 788, 983, 1136, 1922, 1925
ApoI RAATTY 3 cut(s) 1271, 1760, 1777
ArsI GACNNNNNNTTYG 2 cut(s) 1689, 1721
AseI ATTAAT 1 cut(s) 20
Asp700I GAANNNNTTC 2 cut(s) 302, 329
AspLEI GCGC 1 cut(s) 1663
AspS9I GGNCC 5 cut(s) 870, 914, 1412, 1424, 1555
AsuC2I CCSGG 1 cut(s) 874
AsuHPI GGTGA 5 cut(s) 452, 520, 603, 775, 1108
AvaII GGWCC 5 cut(s) 870, 914, 1412, 1424, 1555
BaeI ACNNNNGTAYC 4 cut(s) 795, 828, 1209, 1242
BalI TGGCCA 1 cut(s) 1595
BamHI GGATCC 3 cut(s) 1334, 1843, 1999
BanI GGYRCC 1 cut(s) 1660
BanII GRGCYC 2 cut(s) 1804, 1978
BbrPI CACGTG 1 cut(s) 1400
BbsI GAAGAC 2 cut(s) 730, 1699
Bbv12I GWGCWC 2 cut(s) 359, 1978
BbvI GCAGC 8 cut(s) 20, 463, 626, 800, 995, 1123, 1912, 1934
BccI CCATC 1 cut(s) 1208
BceAI ACGGC 1 cut(s) 1035
BcgI CGANNNNNNTGC 2 cut(s) 1247, 1281
BciT130I CCWGG 4 cut(s) 83, 350, 453, 749
BciVI GTATCC 2 cut(s) 514, 1646
BclI TGATCA 1 cut(s) 442
BcnI CCSGG 1 cut(s) 874
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 1299, 2169
BfmI CTRYAG 3 cut(s) 658, 1647, 1947
BfoI RGCGCY 1 cut(s) 1664
BfrI CTTAAG 1 cut(s) 1511
BfuAI ACCTGC 1 cut(s) 2066
BfuI GTATCC 2 cut(s) 514, 1646
BglI GCCNNNNNGGC 1 cut(s) 1450
BglII AGATCT 3 cut(s) 94, 704, 1575
BisI GCNGC 8 cut(s) 34, 477, 640, 789, 984, 1137, 1923, 1926
BlsI GCNGC 8 cut(s) 35, 478, 641, 790, 985, 1138, 1924, 1927
BmcAI AGTACT 2 cut(s) 161, 380
Bme1390I CCNGG 5 cut(s) 83, 350, 453, 749, 874
Bme18I GGWCC 5 cut(s) 870, 914, 1412, 1424, 1555
BmgT120I GGNCC 5 cut(s) 870, 914, 1412, 1424, 1555
BmiI GGNNCC 6 cut(s) 229, 1000, 1336, 1662, 1845, 2001
BmrFI CCNGG 5 cut(s) 83, 350, 453, 749, 874
BmrI ACTGGG 1 cut(s) 198
BmsI GCATC 5 cut(s) 63, 470, 1920, 2098, 2120
BmuI ACTGGG 1 cut(s) 198
BpiI GAAGAC 2 cut(s) 730, 1699
BpmI CTGGAG 4 cut(s) 104, 371, 501, 1014
Bpu10I CCTNAGC 1 cut(s) 26
BpuMI CCSGG 1 cut(s) 874
BsaAI YACGTR 3 cut(s) 627, 634, 1400
BsaBI GATNNNNATC 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 1661
BsaJI CCNNGG 3 cut(s) 451, 452, 1847
BsaXI ACNNNNNCTCC 2 cut(s) 1036, 1066
Bsc4I CCNNNNNNNGG 4 cut(s) 189, 902, 1421, 1853
Bse1I ACTGG 6 cut(s) 193, 209, 511, 1427, 1445, 1842
Bse3DI GCAATG 2 cut(s) 75, 383
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 4 cut(s) 83, 350, 453, 749
BseDI CCNNGG 3 cut(s) 451, 452, 1847
BseGI GGATG 2 cut(s) 1219, 1309
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 4 cut(s) 189, 902, 1421, 1853
BseMI GCAATG 2 cut(s) 75, 383
BseMII CTCAG 3 cut(s) 112, 258, 305
BseNI ACTGG 6 cut(s) 193, 209, 511, 1427, 1445, 1842
BseRI GAGGAG 1 cut(s) 918
BseXI GCAGC 8 cut(s) 20, 463, 626, 800, 995, 1123, 1912, 1934
BsgI GTGCAG 3 cut(s) 303, 1911, 2094
Bsh1236I CGCG 1 cut(s) 1269
BshFI GGCC 5 cut(s) 1050, 1444, 1595, 1788, 1936
BshNI GGYRCC 1 cut(s) 1660
BsiHKAI GWGCWC 2 cut(s) 359, 1978
BsiSI CCGG 2 cut(s) 873, 1919
BsiWI CGTACG 1 cut(s) 634
BslFI GGGAC 2 cut(s) 434, 1541
BslI CCNNNNNNNGG 4 cut(s) 189, 902, 1421, 1853
BsmAI GTCTC 1 cut(s) 257
BsmFI GGGAC 2 cut(s) 434, 1541
BsmI GAATGC 1 cut(s) 1032
BsnI GGCC 5 cut(s) 1050, 1444, 1595, 1788, 1936
Bsp1286I GDGCHC 3 cut(s) 359, 1804, 1978
Bsp1407I TGTACA 3 cut(s) 281, 591, 1519
Bsp68I TCGCGA 1 cut(s) 1269
BspACI CCGC 2 cut(s) 1229, 1880
BspANI GGCC 5 cut(s) 1050, 1444, 1595, 1788, 1936
BspCNI CTCAG 3 cut(s) 111, 259, 304
BspFNI CGCG 1 cut(s) 1269
BspHI TCATGA 2 cut(s) 210, 949
BspLI GGNNCC 6 cut(s) 229, 1000, 1336, 1662, 1845, 2001
BspMAI CTGCAG 1 cut(s) 1951
BspMI ACCTGC 1 cut(s) 2066
BspPI GGATC 8 cut(s) 55, 215, 1329, 1342, 1838, 1851, 1994, 2007
BspT107I GGYRCC 1 cut(s) 1660
BspTI CTTAAG 1 cut(s) 1511
BsrDI GCAATG 2 cut(s) 75, 383
BsrGI TGTACA 3 cut(s) 281, 591, 1519
BsrI ACTGG 6 cut(s) 193, 209, 511, 1427, 1445, 1842
BssECI CCNNGG 3 cut(s) 451, 452, 1847
BssNI GRCGYC 1 cut(s) 1661
BssT1I CCWWGG 1 cut(s) 1847
Bst2UI CCWGG 4 cut(s) 83, 350, 453, 749
Bst4CI ACNGT 5 cut(s) 526, 716, 808, 1222, 1362
Bst6I CTCTTC 4 cut(s) 777, 1605, 1869, 2061
BstACI GRCGYC 1 cut(s) 1661
BstAFI CTTAAG 1 cut(s) 1511
BstAUI TGTACA 3 cut(s) 281, 591, 1519
BstBAI YACGTR 3 cut(s) 627, 634, 1400
BstC8I GCNNGC 3 cut(s) 11, 604, 1974
BstDEI CTNAG 8 cut(s) 26, 98, 267, 291, 1027, 1572, 1931, 2085
BstF5I GGATG 2 cut(s) 1219, 1309
BstFNI CGCG 1 cut(s) 1269
BstH2I RGCGCY 1 cut(s) 1664
BstHHI GCGC 1 cut(s) 1663
BstMAI GTCTC 1 cut(s) 257
BstMWI GCNNNNNNNGC 5 cut(s) 354, 482, 989, 1450, 1969
BstNI CCWGG 4 cut(s) 83, 350, 453, 749
BstNSI RCATGY 2 cut(s) 13, 1945
BstSCI CCNGG 5 cut(s) 81, 348, 451, 747, 872
BstSFI CTRYAG 3 cut(s) 658, 1647, 1947
BstSNI TACGTA 1 cut(s) 634
BstUI CGCG 1 cut(s) 1269
BstV1I GCAGC 8 cut(s) 20, 463, 626, 800, 995, 1123, 1912, 1934
BstV2I GAAGAC 2 cut(s) 730, 1699
BstX2I RGATCY 7 cut(s) 47, 94, 704, 1334, 1575, 1843, 1999
BstYI RGATCY 7 cut(s) 47, 94, 704, 1334, 1575, 1843, 1999
BsuI GTATCC 2 cut(s) 514, 1646
BsuRI GGCC 5 cut(s) 1050, 1444, 1595, 1788, 1936
BtsCI GGATG 2 cut(s) 1219, 1309
BtsIMutI CAGTG 3 cut(s) 186, 202, 504
BtuMI TCGCGA 1 cut(s) 1269
BveI ACCTGC 1 cut(s) 2066
Cac8I GCNNGC 3 cut(s) 11, 604, 1974
CaiI CAGNNNCTG 1 cut(s) 266
CciI TCATGA 2 cut(s) 210, 949
CfoI GCGC 1 cut(s) 1663
Cfr13I GGNCC 5 cut(s) 870, 914, 1412, 1424, 1555
Csp6I GTAC 9 cut(s) 160, 282, 379, 592, 628, 635, 968, 1218, 1520
CviQI GTAC 9 cut(s) 160, 282, 379, 592, 628, 635, 968, 1218, 1520
DdeI CTNAG 8 cut(s) 26, 98, 267, 291, 1027, 1572, 1931, 2085
DinI GGCGCC 1 cut(s) 1662
EaeI YGGCCR 1 cut(s) 1593
Eam1104I CTCTTC 4 cut(s) 777, 1605, 1869, 2061
EarI CTCTTC 4 cut(s) 777, 1605, 1869, 2061
Ecl136II GAGCTC 1 cut(s) 1976
Eco105I TACGTA 1 cut(s) 634
Eco130I CCWWGG 1 cut(s) 1847
Eco147I AGGCCT 2 cut(s) 1788, 1936
Eco24I GRGCYC 2 cut(s) 1804, 1978
Eco32I GATATC 1 cut(s) 1296
Eco47I GGWCC 5 cut(s) 870, 914, 1412, 1424, 1555
Eco53kI GAGCTC 1 cut(s) 1976
Eco57I CTGAAG 2 cut(s) 972, 1693
Eco72I CACGTG 1 cut(s) 1400
EcoICRI GAGCTC 1 cut(s) 1976
EcoRII CCWGG 4 cut(s) 81, 348, 451, 747
EcoRV GATATC 1 cut(s) 1296
EcoT14I CCWWGG 1 cut(s) 1847
EcoT22I ATGCAT 3 cut(s) 1104, 1913, 2113
EcoT38I GRGCYC 2 cut(s) 1804, 1978
EgeI GGCGCC 1 cut(s) 1662
EheI GGCGCC 1 cut(s) 1662
ErhI CCWWGG 1 cut(s) 1847
FaqI GGGAC 2 cut(s) 434, 1541
FbaI TGATCA 1 cut(s) 442
FblI GTMKAC 1 cut(s) 1194
Fnu4HI GCNGC 8 cut(s) 34, 477, 640, 789, 984, 1137, 1923, 1926
FokI GGATG 2 cut(s) 1226, 1296
FriOI GRGCYC 2 cut(s) 1804, 1978
Fsp4HI GCNGC 8 cut(s) 34, 477, 640, 789, 984, 1137, 1923, 1926
FspBI CTAG 2 cut(s) 1299, 2169
GlaI GCGC 1 cut(s) 1662
GluI GCNGC 8 cut(s) 34, 477, 640, 789, 984, 1137, 1923, 1926
GsuI CTGGAG 4 cut(s) 104, 371, 501, 1014
HaeII RGCGCY 1 cut(s) 1664
HaeIII GGCC 5 cut(s) 1050, 1444, 1595, 1788, 1936
HapII CCGG 2 cut(s) 873, 1919
HhaI GCGC 1 cut(s) 1663
Hin1I GRCGYC 1 cut(s) 1661
Hin6I GCGC 1 cut(s) 1661
HinP1I GCGC 1 cut(s) 1661
HincII GTYRAC 1 cut(s) 2031
HindII GTYRAC 1 cut(s) 2031
HindIII AAGCTT 2 cut(s) 310, 1598
HinfI GANTC 6 cut(s) 4, 131, 495, 754, 1092, 1502
HpaI GTTAAC 1 cut(s) 2031
HpaII CCGG 2 cut(s) 873, 1919
HphI GGTGA 5 cut(s) 452, 520, 603, 775, 1108
Hpy166II GTNNAC 6 cut(s) 594, 917, 1162, 1195, 1279, 2031
Hpy188I TCNGA 8 cut(s) 171, 262, 572, 695, 860, 1582, 2107, 2149
Hpy188III TCNNGA 7 cut(s) 211, 341, 950, 1021, 1268, 1415, 1954
Hpy8I GTNNAC 6 cut(s) 594, 917, 1162, 1195, 1279, 2031
HpyAV CCTTC 9 cut(s) 431, 680, 760, 958, 1129, 1169, 1415, 1702, 1961
HpyCH4III ACNGT 5 cut(s) 526, 716, 808, 1222, 1362
HpyCH4IV ACGT 3 cut(s) 626, 633, 1399
HpyF10VI GCNNNNNNNGC 5 cut(s) 354, 482, 989, 1450, 1969
HpyF3I CTNAG 8 cut(s) 26, 98, 267, 291, 1027, 1572, 1931, 2085
HpySE526I ACGT 3 cut(s) 626, 633, 1399
Hsp92I GRCGYC 1 cut(s) 1661
HspAI GCGC 1 cut(s) 1661
KasI GGCGCC 1 cut(s) 1660
Ksp22I TGATCA 1 cut(s) 442
KspAI GTTAAC 1 cut(s) 2031
LmnI GCTCC 5 cut(s) 30, 233, 482, 1981, 2137
Lsp1109I GCAGC 8 cut(s) 20, 463, 626, 800, 995, 1123, 1912, 1934
LweI GCATC 5 cut(s) 63, 470, 1920, 2098, 2120
MaeI CTAG 2 cut(s) 1299, 2169
MaeII ACGT 3 cut(s) 626, 633, 1399
MaeIII GTNAC 1 cut(s) 526
MflI RGATCY 7 cut(s) 47, 94, 704, 1334, 1575, 1843, 1999
MhlI GDGCHC 3 cut(s) 359, 1804, 1978
MlsI TGGCCA 1 cut(s) 1595
MluNI TGGCCA 1 cut(s) 1595
Mly113I GGCGCC 1 cut(s) 1661
MlyI GAGTC 1 cut(s) 1086
MmeI TCCRAC 1 cut(s) 25
Mox20I TGGCCA 1 cut(s) 1595
Mph1103I ATGCAT 3 cut(s) 1104, 1913, 2113
MroXI GAANNNNTTC 2 cut(s) 302, 329
MscI TGGCCA 1 cut(s) 1595
MseI TTAA 7 cut(s) 20, 1131, 1233, 1512, 1566, 1688, 2030
Msp20I TGGCCA 1 cut(s) 1595
MspA1I CMGCKG 3 cut(s) 295, 992, 1925
MspCI CTTAAG 1 cut(s) 1511
MspI CCGG 2 cut(s) 873, 1919
MspR9I CCNGG 5 cut(s) 83, 350, 453, 749, 874
Mva1269I GAATGC 1 cut(s) 1032
MvaI CCWGG 4 cut(s) 83, 350, 453, 749
MvnI CGCG 1 cut(s) 1269
MwoI GCNNNNNNNGC 5 cut(s) 354, 482, 989, 1450, 1969
NarI GGCGCC 1 cut(s) 1661
NciI CCSGG 1 cut(s) 874
NlaIV GGNNCC 6 cut(s) 229, 1000, 1336, 1662, 1845, 2001
NmuCI GTSAC 1 cut(s) 526
NruI TCGCGA 1 cut(s) 1269
NsiI ATGCAT 3 cut(s) 1104, 1913, 2113
NspI RCATGY 2 cut(s) 13, 1945
PaeI GCATGC 1 cut(s) 13
PagI TCATGA 2 cut(s) 210, 949
PaqCI CACCTGC 1 cut(s) 2066
PasI CCCWGGG 1 cut(s) 452
PceI AGGCCT 2 cut(s) 1788, 1936
PciI ACATGT 1 cut(s) 1941
PctI GAATGC 1 cut(s) 1032
PdmI GAANNNNTTC 2 cut(s) 302, 329
PfeI GAWTC 4 cut(s) 131, 495, 754, 1502
Pfl23II CGTACG 1 cut(s) 634
PfoI TCCNGGA 2 cut(s) 747, 872
PkrI GCNGC 8 cut(s) 35, 478, 641, 790, 985, 1138, 1924, 1927
PleI GAGTC 1 cut(s) 1086
PluTI GGCGCC 1 cut(s) 1664
PmaCI CACGTG 1 cut(s) 1400
PmlI CACGTG 1 cut(s) 1400
PpsI GAGTC 1 cut(s) 1086
Ppu21I YACGTR 3 cut(s) 627, 634, 1400
PscI ACATGT 1 cut(s) 1941
PshBI ATTAAT 1 cut(s) 20
Psp124BI GAGCTC 1 cut(s) 1978
Psp6I CCWGG 4 cut(s) 81, 348, 451, 747
PspCI CACGTG 1 cut(s) 1400
PspGI CCWGG 4 cut(s) 81, 348, 451, 747
PspLI CGTACG 1 cut(s) 634
PspN4I GGNNCC 6 cut(s) 229, 1000, 1336, 1662, 1845, 2001
PspPI GGNCC 5 cut(s) 870, 914, 1412, 1424, 1555
PstI CTGCAG 1 cut(s) 1951
PstNI CAGNNNCTG 1 cut(s) 266
PsuI RGATCY 7 cut(s) 47, 94, 704, 1334, 1575, 1843, 1999
PvuII CAGCTG 3 cut(s) 295, 992, 1925
RruI TCGCGA 1 cut(s) 1269
RsaI GTAC 9 cut(s) 161, 283, 380, 593, 629, 636, 969, 1219, 1521
RsaNI GTAC 9 cut(s) 160, 282, 379, 592, 628, 635, 968, 1218, 1520
SacI GAGCTC 1 cut(s) 1978
SaqAI TTAA 7 cut(s) 20, 1131, 1233, 1512, 1566, 1688, 2030
SatI GCNGC 8 cut(s) 34, 477, 640, 789, 984, 1137, 1923, 1926
Sau96I GGNCC 5 cut(s) 870, 914, 1412, 1424, 1555
ScaI AGTACT 2 cut(s) 161, 380
SchI GAGTC 1 cut(s) 1086
ScrFI CCNGG 5 cut(s) 83, 350, 453, 749, 874
SduI GDGCHC 3 cut(s) 359, 1804, 1978
SfaNI GCATC 5 cut(s) 63, 470, 1920, 2098, 2120
SfcI CTRYAG 3 cut(s) 658, 1647, 1947
SfoI GGCGCC 1 cut(s) 1662
SinI GGWCC 5 cut(s) 870, 914, 1412, 1424, 1555
SmlI CTYRAG 1 cut(s) 1511
SmoI CTYRAG 1 cut(s) 1511
SnaBI TACGTA 1 cut(s) 634
SphI GCATGC 1 cut(s) 13
SseBI AGGCCT 2 cut(s) 1788, 1936
SsiI CCGC 2 cut(s) 1229, 1880
SspDI GGCGCC 1 cut(s) 1660
SspMI CTAG 2 cut(s) 1299, 2169
SstI GAGCTC 1 cut(s) 1978
StuI AGGCCT 2 cut(s) 1788, 1936
StyD4I CCNGG 5 cut(s) 81, 348, 451, 747, 872
StyI CCWWGG 1 cut(s) 1847
TaaI ACNGT 5 cut(s) 526, 716, 808, 1222, 1362
TaiI ACGT 3 cut(s) 629, 636, 1402
TaqI TCGA 4 cut(s) 1095, 1253, 1765, 1983
TatI WGTACW 5 cut(s) 159, 281, 378, 591, 1519
TfiI GAWTC 4 cut(s) 131, 495, 754, 1502
Tru1I TTAA 7 cut(s) 20, 1131, 1233, 1512, 1566, 1688, 2030
Tru9I TTAA 7 cut(s) 20, 1131, 1233, 1512, 1566, 1688, 2030
TscAI CASTG 3 cut(s) 193, 209, 511
TseFI GTSAC 1 cut(s) 526
TseI GCWGC 8 cut(s) 33, 476, 639, 788, 983, 1136, 1922, 1925
Tsp45I GTSAC 1 cut(s) 526
TspDTI ATGAA 9 cut(s) 227, 351, 590, 854, 1368, 1386, 1772, 2001, 2091
TspGWI ACGGA 3 cut(s) 742, 823, 2037
TspRI CASTG 3 cut(s) 193, 209, 511
Vha464I CTTAAG 1 cut(s) 1511
VpaK11BI GGWCC 5 cut(s) 870, 914, 1412, 1424, 1555
VspI ATTAAT 1 cut(s) 20
XapI RAATTY 3 cut(s) 1271, 1760, 1777
XceI RCATGY 2 cut(s) 13, 1945
XmiI GTMKAC 1 cut(s) 1194
XmnI GAANNNNTTC 2 cut(s) 302, 329
XspI CTAG 2 cut(s) 1299, 2169
ZrmI AGTACT 2 cut(s) 161, 380
Zsp2I ATGCAT 3 cut(s) 1104, 1913, 2113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.