Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

65275178 .. 65300717

Gene Structure 25540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG484600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGGCTGAGGCCTTGGCGAAGCTCACCGACTCTCTCTACTCCGACTCCAAGCCCATCACCGCCACTGATCTCTTGTTTCGGTTGCGCACCGACTCCGACTCCGACTCCATCAGACCGGGTCTCCAGAACCTTCTCCTGATTCTAAAACGCAGCGTCGAGGCCGACGCAGACGGCAAGCTAGGGCTCCAATCATGGACAGATTCGCAAATTCAAGCTGTATATTCCCTCGCCTACGCTGTTGTCTCCTCCTCTCGATCTCTCTCAGACATAGTGGAGCAAGCGGAAGCAATAATTGTGGCCACTGTGCAACTGTCTCTGGAGTTTGCTATATGTTTTCTGGAAAGATCAGATTTCGGCAGCGCAGACATGAGTATTCAGGTTCTCTCATCCAGTTTGACTTCGACGCACCTCTTCTCTCATCTCTTTTCTCTAATTCACCGAATCCGACCATTCTCCACCCAAAGCCAGAGCTCCGCCTTTCCCTCGTCAAGCCCTAACGTTCAAGACGGGTTCGATTCAGTTAATAAGTATGAAGAAGGAGGAAGCTTTCCCAGAAGGAAAGATGAAATCAAGGAAAATGATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000902 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006810 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0009628 GO:0009639 GO:0009640 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009826 GO:0009914 GO:0009926 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010101 GO:0010102 GO:0010229 GO:0010311 GO:0010817 GO:0016020 GO:0016043 GO:0016049 GO:0022414 GO:0022622 GO:0030054 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042221 GO:0043207 GO:0044424 GO:0044444 GO:0044464 GO:0048281 GO:0048364 GO:0048367 GO:0048527 GO:0048528 GO:0048589 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0060560 GO:0060918 GO:0061458 GO:0065007 GO:0065008 GO:0071840 GO:0090567 GO:0090696 GO:0090697 GO:0090698 GO:0099402 GO:1905392 GO:1905393

KEGG Pathways

Metabolic & Signaling

ko05165 ko05203 map05165 map05203

Pfam Domains

Protein Families

E3_UbLigase_R4 ZZ

Protein Analysis

195

Amino Acids

21.43

Weight (kDa)

4.72

Isoelectric Point (pI)

62.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	86
AciI	CCGC	3 cut(s)	60, 281, 474
AclI	AACGTT	1 cut(s)	498
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	1 cut(s)	207
AgsI	TTSAA	2 cut(s)	212, 503
AluBI	AGCT	5 cut(s)	22, 178, 215, 471, 546
AluI	AGCT	5 cut(s)	22, 178, 215, 471, 546
Alw21I	GWGCWC	1 cut(s)	473
Alw26I	GTCTC	3 cut(s)	125, 247, 318
AoxI	GGCC	3 cut(s)	9, 159, 297
ApeKI	GCWGC	2 cut(s)	150, 357
ApoI	RAATTY	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	87, 362
AsuC2I	CCSGG	1 cut(s)	117
AsuHPI	GGTGA	3 cut(s)	16, 49, 428
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	2 cut(s)	186, 473
Bbv12I	GWGCWC	1 cut(s)	473
BbvCI	CCTCAGC	1 cut(s)	6
BbvI	GCAGC	2 cut(s)	162, 369
BccI	CCATC	2 cut(s)	62, 116
BceAI	ACGGC	1 cut(s)	187
BcnI	CCSGG	1 cut(s)	117
BcoDI	GTCTC	3 cut(s)	125, 247, 318
BfaI	CTAG	1 cut(s)	179
BisI	GCNGC	2 cut(s)	151, 358
BlsI	GCNGC	2 cut(s)	152, 359
Bme1390I	CCNGG	1 cut(s)	117
BmiI	GGNNCC	1 cut(s)	185
BmrFI	CCNGG	1 cut(s)	117
BpmI	CTGGAG	2 cut(s)	107, 338
Bpu10I	CCTNAGC	1 cut(s)	6
BpuMI	CCSGG	1 cut(s)	117
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	12
BsaXI	ACNNNNNCTCC	8 cut(s)	29, 59, 83, 89, 105, 113, 119, 135
Bse1I	ACTGG	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	386
BseMII	CTCAG	1 cut(s)	276
BseNI	ACTGG	1 cut(s)	390
BseRI	GAGGAG	2 cut(s)	235, 238
BseXI	GCAGC	2 cut(s)	162, 369
BshFI	GGCC	3 cut(s)	11, 161, 299
BsiHKAI	GWGCWC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	116
BsmAI	GTCTC	3 cut(s)	125, 247, 318
BsnI	GGCC	3 cut(s)	11, 161, 299
Bso31I	GGTCTC	1 cut(s)	125
Bsp1286I	GDGCHC	2 cut(s)	186, 473
Bsp143I	GATC	3 cut(s)	67, 254, 344
BspACI	CCGC	3 cut(s)	60, 281, 474
BspANI	GGCC	3 cut(s)	11, 161, 299
BspCNI	CTCAG	1 cut(s)	275
BspLI	GGNNCC	1 cut(s)	185
BspTNI	GGTCTC	1 cut(s)	125
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	3 cut(s)	67, 254, 344
BssT1I	CCWWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	304, 312
Bst6I	CTCTTC	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	176, 279
BstDEI	CTNAG	2 cut(s)	6, 262
BstF5I	GGATG	1 cut(s)	386
BstHHI	GCGC	2 cut(s)	87, 362
BstKTI	GATC	3 cut(s)	70, 257, 347
BstMAI	GTCTC	3 cut(s)	125, 247, 318
BstMBI	GATC	3 cut(s)	67, 254, 344
BstSCI	CCNGG	1 cut(s)	115
BstV1I	GCAGC	2 cut(s)	162, 369
BsuRI	GGCC	3 cut(s)	11, 161, 299
BtsCI	GGATG	1 cut(s)	386
BtsIMutI	CAGTG	2 cut(s)	63, 300
Cac8I	GCNNGC	2 cut(s)	176, 279
CfoI	GCGC	2 cut(s)	87, 362
CseI	GACGC	3 cut(s)	142, 173, 412
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	2 cut(s)	192, 367
DdeI	CTNAG	2 cut(s)	6, 262
DpnI	GATC	3 cut(s)	69, 256, 346
DpnII	GATC	3 cut(s)	67, 254, 344
EaeI	YGGCCR	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	416
EarI	CTCTTC	1 cut(s)	416
EciI	GGCGGA	1 cut(s)	463
Ecl136II	GAGCTC	1 cut(s)	471
Eco130I	CCWWGG	1 cut(s)	12
Eco147I	AGGCCT	1 cut(s)	11
Eco24I	GRGCYC	2 cut(s)	186, 473
Eco31I	GGTCTC	1 cut(s)	125
Eco53kI	GAGCTC	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	471
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	2 cut(s)	186, 473
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	195, 370
FaiI	YATR	7 cut(s)	193, 220, 269, 329, 331, 368, 531
FatI	CATG	2 cut(s)	191, 366
Fnu4HI	GCNGC	2 cut(s)	151, 358
FokI	GGATG	1 cut(s)	373
FriOI	GRGCYC	2 cut(s)	186, 473
Fsp4HI	GCNGC	2 cut(s)	151, 358
FspBI	CTAG	1 cut(s)	179
FspI	TGCGCA	1 cut(s)	86
GlaI	GCGC	2 cut(s)	86, 361
GluI	GCNGC	2 cut(s)	151, 358
GsuI	CTGGAG	2 cut(s)	107, 338
HaeIII	GGCC	3 cut(s)	11, 161, 299
HapII	CCGG	1 cut(s)	116
HgaI	GACGC	3 cut(s)	142, 173, 412
HhaI	GCGC	2 cut(s)	87, 362
Hin1II	CATG	2 cut(s)	195, 370
Hin6I	GCGC	2 cut(s)	85, 360
HinP1I	GCGC	2 cut(s)	85, 360
HindIII	AAGCTT	1 cut(s)	544
HinfI	GANTC	9 cut(s)	29, 44, 92, 98, 104, 139, 200, 441, 515
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	3 cut(s)	16, 49, 428
Hpy188I	TCNGA	7 cut(s)	43, 97, 103, 113, 265, 349, 446
Hpy188III	TCNNGA	6 cut(s)	124, 136, 252, 317, 338, 503
Hpy99I	CGWCG	3 cut(s)	158, 167, 406
HpyAV	CCTTC	3 cut(s)	140, 530, 549
HpyCH4III	ACNGT	2 cut(s)	304, 312
HpyCH4IV	ACGT	1 cut(s)	498
HpyCH4V	TGCA	1 cut(s)	307
HpyF3I	CTNAG	2 cut(s)	6, 262
HpySE526I	ACGT	1 cut(s)	498
Hsp92II	CATG	2 cut(s)	195, 370
HspAI	GCGC	2 cut(s)	85, 360
Kzo9I	GATC	3 cut(s)	67, 254, 344
LmnI	GCTCC	3 cut(s)	189, 274, 476
LpnPI	CCDG	9 cut(s)	129, 137, 149, 302, 323, 362, 403, 479, 565
Lsp1109I	GCAGC	2 cut(s)	162, 369
MaeI	CTAG	1 cut(s)	179
MaeII	ACGT	1 cut(s)	498
MalI	GATC	3 cut(s)	69, 256, 346
MboI	GATC	3 cut(s)	67, 254, 344
MboII	GAAGA	2 cut(s)	403, 545
MhlI	GDGCHC	2 cut(s)	186, 473
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	3 cut(s)	207, 291, 432
MluNI	TGGCCA	1 cut(s)	299
MlyI	GAGTC	5 cut(s)	23, 38, 86, 92, 98
MmeI	TCCRAC	4 cut(s)	66, 120, 126, 469
MnlI	CCTC	7 cut(s)	151, 236, 256, 259, 419, 493, 533
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	1 cut(s)	522
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	117
NciI	CCSGG	1 cut(s)	117
NdeII	GATC	3 cut(s)	67, 254, 344
NlaIII	CATG	2 cut(s)	195, 370
NlaIV	GGNNCC	1 cut(s)	185
NsbI	TGCGCA	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	11
PfeI	GAWTC	4 cut(s)	139, 200, 441, 515
PflFI	GACNNNGTC	1 cut(s)	117
PkrI	GCNGC	2 cut(s)	152, 359
PleI	GAGTC	5 cut(s)	23, 38, 86, 92, 98
PpsI	GAGTC	5 cut(s)	23, 38, 86, 92, 98
Psp124BI	GAGCTC	1 cut(s)	473
Psp1406I	AACGTT	1 cut(s)	498
PspN4I	GGNNCC	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	117
SacI	GAGCTC	1 cut(s)	473
SaqAI	TTAA	1 cut(s)	522
SatI	GCNGC	2 cut(s)	151, 358
Sau3AI	GATC	3 cut(s)	67, 254, 344
SchI	GAGTC	5 cut(s)	23, 38, 86, 92, 98
ScrFI	CCNGG	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	186, 473
SetI	ASST	9 cut(s)	24, 132, 180, 217, 381, 411, 473, 501, 548
Sse9I	AATT	3 cut(s)	207, 291, 432
SseBI	AGGCCT	1 cut(s)	11
SsiI	CCGC	3 cut(s)	60, 281, 474
SspMI	CTAG	1 cut(s)	179
SstI	GAGCTC	1 cut(s)	473
StuI	AGGCCT	1 cut(s)	11
StyD4I	CCNGG	1 cut(s)	115
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	304, 312
TaiI	ACGT	1 cut(s)	501
TaqI	TCGA	4 cut(s)	156, 253, 401, 513
TasI	AATT	3 cut(s)	207, 291, 432
TfiI	GAWTC	4 cut(s)	139, 200, 441, 515
Tru1I	TTAA	1 cut(s)	522
Tru9I	TTAA	1 cut(s)	522
TscAI	CASTG	2 cut(s)	70, 307
TseI	GCWGC	2 cut(s)	150, 357
TspDTI	ATGAA	2 cut(s)	546, 579
TspRI	CASTG	2 cut(s)	70, 307
Tth111I	GACNNNGTC	1 cut(s)	117
XapI	RAATTY	1 cut(s)	207
XspI	CTAG	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.