Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

40353023 .. 40354172

Gene Structure 1150 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00315780.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGCAGGGTATACTATTGGATGGTACTATAATTGCAGTTAAGCAACTATCTTCAAAATCGAAGCAGGGAAATCATGAATTTGTTAACGAAATAGGCATGATCTCTTGTTTGCAGCATCCAAATCTGGTAAGAATGTATGGATGTTGTATTGAAGCAAACCAGTTATTGTTGGTGTATGAGTATTTGGAGAACAATAGCCTTGTTCGCGCTTTGTACGGTCCAGATGATGATCCTTTAAACTTGGCTTGGCCTACAAGGCAGAAAATATGCCTAGGCATAGCAAAAGGTCTGACTTATCTGCATGAGGAATCGGCAGTGAAGGTTGTACATAGAGACATCAAAACTACGAATGTGTTACTGGACCAAGACCTCAATGCCAAGATCTCAGACTTTGGTTTGGCCAAGCTTGATGAAGAGGAGAAAACTCACATTAGCACCAAGGTTGCTGGAACTATAGGATATATGGCACCGGAATATGCTCTATGGGGTAGTTTGACCTTTAAAGCAGATGTCTATAGTTTTGGAATTGTTGCATTAGAAATTGTTGCAGGAAAGAACATGAAATATCAACCCAGTGAGAACATTCAATGTCTTATGGATTGGGTAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

203

Amino Acids

22.71

Weight (kDa)

5.53

Isoelectric Point (pI)

33.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	7 - 193	2.1e-40	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	9 - 196	1e-41	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	466
AccI	GTMKAC	1 cut(s)	10
AccII	CGCG	1 cut(s)	207
AclWI	GGATC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	399
AcsI	RAATTY	1 cut(s)	77
AfaI	GTAC	3 cut(s)	25, 215, 327
AgsI	TTSAA	3 cut(s)	54, 152, 587
AluBI	AGCT	1 cut(s)	406
AluI	AGCT	1 cut(s)	406
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	224
AoxI	GGCC	2 cut(s)	248, 399
ApeKI	GCWGC	1 cut(s)	112
ApoI	RAATTY	1 cut(s)	77
AspA2I	CCTAGG	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	2 cut(s)	218, 361
AvaII	GGWCC	2 cut(s)	218, 361
AvrII	CCTAGG	1 cut(s)	271
BalI	TGGCCA	1 cut(s)	401
BanI	GGYRCC	1 cut(s)	466
BbvI	GCAGC	1 cut(s)	124
BccI	CCATC	1 cut(s)	14
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	1 cut(s)	272
BfmI	CTRYAG	2 cut(s)	453, 514
BglI	GCCNNNNNGGC	1 cut(s)	256
BglII	AGATCT	1 cut(s)	381
BisI	GCNGC	1 cut(s)	113
BlnI	CCTAGG	1 cut(s)	271
BlsI	GCNGC	1 cut(s)	114
Bme18I	GGWCC	2 cut(s)	218, 361
BmgT120I	GGNCC	2 cut(s)	218, 361
BmiI	GGNNCC	1 cut(s)	468
BmrI	ACTGGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	124
BmuI	ACTGGG	1 cut(s)	567
BsaBI	GATNNNNATC	1 cut(s)	228
BsaJI	CCNNGG	2 cut(s)	271, 438
BsaWI	WCCGGW	1 cut(s)	469
Bse1I	ACTGG	3 cut(s)	160, 363, 573
Bse8I	GATNNNNATC	1 cut(s)	228
BseDI	CCNNGG	2 cut(s)	271, 438
BseGI	GGATG	3 cut(s)	25, 115, 146
BseJI	GATNNNNATC	1 cut(s)	228
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	160, 363, 573
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	250, 401
BshNI	GGYRCC	1 cut(s)	466
BsiSI	CCGG	1 cut(s)	470
BsmAI	GTCTC	1 cut(s)	327
BsnI	GGCC	2 cut(s)	250, 401
Bsp1407I	TGTACA	1 cut(s)	325
Bsp143I	GATC	3 cut(s)	99, 229, 381
BspANI	GGCC	2 cut(s)	250, 401
BspCNI	CTCAG	1 cut(s)	398
BspFNI	CGCG	1 cut(s)	207
BspHI	TCATGA	1 cut(s)	73
BspLI	GGNNCC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	224
BspT107I	GGYRCC	1 cut(s)	466
BsrGI	TGTACA	1 cut(s)	325
BsrI	ACTGG	3 cut(s)	160, 363, 573
BssECI	CCNNGG	2 cut(s)	271, 438
BssMI	GATC	3 cut(s)	99, 229, 381
BssNAI	GTATAC	1 cut(s)	11
BssT1I	CCWWGG	2 cut(s)	271, 438
Bst1107I	GTATAC	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	218
Bst6I	CTCTTC	1 cut(s)	408
BstAUI	TGTACA	1 cut(s)	325
BstDEI	CTNAG	1 cut(s)	385
BstF5I	GGATG	3 cut(s)	25, 115, 146
BstFNI	CGCG	1 cut(s)	207
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	3 cut(s)	102, 232, 384
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	3 cut(s)	99, 229, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	204, 256
BstSFI	CTRYAG	2 cut(s)	453, 514
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	381
BstYI	RGATCY	1 cut(s)	381
BstZ17I	GTATAC	1 cut(s)	11
BsuRI	GGCC	2 cut(s)	250, 401
BtsCI	GGATG	3 cut(s)	25, 115, 146
BtsI	GCAGTG	1 cut(s)	321
BtsIMutI	CAGTG	2 cut(s)	321, 580
CciI	TCATGA	1 cut(s)	73
CfoI	GCGC	1 cut(s)	209
Cfr13I	GGNCC	2 cut(s)	218, 361
Csp6I	GTAC	3 cut(s)	24, 214, 326
CviAII	CATG	4 cut(s)	74, 97, 302, 559
CviJI	RGCY	5 cut(s)	198, 245, 250, 401, 406
CviKI_1	RGCY	5 cut(s)	198, 245, 250, 401, 406
CviQI	GTAC	3 cut(s)	24, 214, 326
DdeI	CTNAG	1 cut(s)	385
DpnI	GATC	3 cut(s)	101, 231, 383
DpnII	GATC	3 cut(s)	99, 229, 381
DraI	TTTAAA	2 cut(s)	237, 502
EaeI	YGGCCR	1 cut(s)	399
Eam1104I	CTCTTC	1 cut(s)	408
EarI	CTCTTC	1 cut(s)	408
Eco130I	CCWWGG	2 cut(s)	271, 438
Eco47I	GGWCC	2 cut(s)	218, 361
EcoT14I	CCWWGG	2 cut(s)	271, 438
ErhI	CCWWGG	2 cut(s)	271, 438
FaeI	CATG	4 cut(s)	77, 100, 305, 562
FatI	CATG	4 cut(s)	73, 96, 301, 558
FblI	GTMKAC	1 cut(s)	10
Fnu4HI	GCNGC	1 cut(s)	113
FokI	GGATG	3 cut(s)	32, 102, 153
Fsp4HI	GCNGC	1 cut(s)	113
FspBI	CTAG	1 cut(s)	272
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	1 cut(s)	113
HaeIII	GGCC	2 cut(s)	250, 401
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	1 cut(s)	209
Hin1II	CATG	4 cut(s)	77, 100, 305, 562
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HincII	GTYRAC	1 cut(s)	85
HindII	GTYRAC	1 cut(s)	85
HindIII	AAGCTT	1 cut(s)	404
HinfI	GANTC	1 cut(s)	308
HpaI	GTTAAC	1 cut(s)	85
HpaII	CCGG	1 cut(s)	470
Hpy166II	GTNNAC	2 cut(s)	11, 85
Hpy188I	TCNGA	2 cut(s)	291, 388
Hpy188III	TCNNGA	2 cut(s)	74, 221
Hpy8I	GTNNAC	2 cut(s)	11, 85
HpyAV	CCTTC	1 cut(s)	313
HpyCH4III	ACNGT	1 cut(s)	218
HpyCH4V	TGCA	6 cut(s)	4, 35, 112, 301, 533, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	204, 256
HpyF3I	CTNAG	1 cut(s)	385
Hsp92II	CATG	4 cut(s)	77, 100, 305, 562
HspAI	GCGC	1 cut(s)	207
KspAI	GTTAAC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	99, 229, 381
LpnPI	CCDG	9 cut(s)	50, 110, 173, 234, 344, 432, 483, 534, 586
Lsp1109I	GCAGC	1 cut(s)	124
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	272
MaeIII	GTNAC	1 cut(s)	354
MalI	GATC	3 cut(s)	101, 231, 383
MboI	GATC	3 cut(s)	99, 229, 381
MboII	GAAGA	2 cut(s)	42, 425
MflI	RGATCY	1 cut(s)	381
MlsI	TGGCCA	1 cut(s)	401
MluCI	AATT	4 cut(s)	30, 77, 525, 540
MluNI	TGGCCA	1 cut(s)	401
MnlI	CCTC	3 cut(s)	298, 380, 409
Mox20I	TGGCCA	1 cut(s)	401
MscI	TGGCCA	1 cut(s)	401
MseI	TTAA	4 cut(s)	39, 84, 236, 501
Msp20I	TGGCCA	1 cut(s)	401
MspI	CCGG	1 cut(s)	470
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	2 cut(s)	204, 256
NdeII	GATC	3 cut(s)	99, 229, 381
NlaIII	CATG	4 cut(s)	77, 100, 305, 562
NlaIV	GGNNCC	1 cut(s)	468
PagI	TCATGA	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	468
PspPI	GGNCC	2 cut(s)	218, 361
PsuI	RGATCY	1 cut(s)	381
RsaI	GTAC	3 cut(s)	25, 215, 327
RsaNI	GTAC	3 cut(s)	24, 214, 326
SaqAI	TTAA	4 cut(s)	39, 84, 236, 501
SatI	GCNGC	1 cut(s)	113
Sau3AI	GATC	3 cut(s)	99, 229, 381
Sau96I	GGNCC	2 cut(s)	218, 361
SetI	ASST	6 cut(s)	289, 324, 372, 408, 444, 500
SfaNI	GCATC	1 cut(s)	124
SfcI	CTRYAG	2 cut(s)	453, 514
SinI	GGWCC	2 cut(s)	218, 361
Sse9I	AATT	4 cut(s)	30, 77, 525, 540
SspMI	CTAG	1 cut(s)	272
StyI	CCWWGG	2 cut(s)	271, 438
TaaI	ACNGT	1 cut(s)	218
TaqI	TCGA	1 cut(s)	59
TasI	AATT	4 cut(s)	30, 77, 525, 540
TatI	WGTACW	1 cut(s)	325
TfiI	GAWTC	1 cut(s)	308
Tru1I	TTAA	4 cut(s)	39, 84, 236, 501
Tru9I	TTAA	4 cut(s)	39, 84, 236, 501
TscAI	CASTG	2 cut(s)	321, 580
TseI	GCWGC	1 cut(s)	112
TspDTI	ATGAA	3 cut(s)	90, 426, 575
TspRI	CASTG	2 cut(s)	321, 580
VpaK11BI	GGWCC	2 cut(s)	218, 361
XapI	RAATTY	1 cut(s)	77
XmaJI	CCTAGG	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	10
XspI	CTAG	1 cut(s)	272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.