Rh5BG412100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0000134
Physical Location & Seq
Reverse (-)
66835022 .. 66844438
9417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG412100.1

Sequence Viewer

Length: 255 bp
ATGAATCTATTATTGATATTGCCGTTTTGGACTGAAATTGAGAACTGCTGGTCCAATCTTCAAGCTTCAAGCCTTCAACCCTTCAACCCACACTCCCACAGAGCTTCAACCTTCAAGGCTTTCAATTCAGAACATACCCATCAAGCAACAAACAGAGATGCGAAGATAGTCTTCAGAGAGCTCGACCTTCAAGGCTTCAACCTTCAACCCACAGATGTTAAAGCTTCAAGCTTTCGAACTGAACATACCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.75

Weight (kDa)

6.57

Isoelectric Point (pI)

50.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 157
AloI GAACNNNNNNTCC 2 cut(s) 35, 67
AluBI AGCT 5 cut(s) 65, 104, 181, 224, 231
AluI AGCT 5 cut(s) 65, 104, 181, 224, 231
Alw21I GWGCWC 1 cut(s) 183
AspS9I GGNCC 1 cut(s) 51
AsuII TTCGAA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 51
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 1 cut(s) 163
Bbv12I GWGCWC 1 cut(s) 183
BccI CCATC 1 cut(s) 147
BceAI ACGGC 1 cut(s) 7
BfaI CTAG 1 cut(s) 253
Bme18I GGWCC 1 cut(s) 51
BmgT120I GGNCC 1 cut(s) 51
BmsI GCATC 1 cut(s) 148
BpiI GAAGAC 1 cut(s) 163
Bpu14I TTCGAA 1 cut(s) 235
BsaXI ACNNNNNCTCC 2 cut(s) 77, 107
BsiHKAI GWGCWC 1 cut(s) 183
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 183
BspT104I TTCGAA 1 cut(s) 235
BstBI TTCGAA 1 cut(s) 235
BstV2I GAAGAC 1 cut(s) 163
Cfr13I GGNCC 1 cut(s) 51
CviJI RGCY 8 cut(s) 65, 72, 104, 119, 181, 195, 224, 231
CviKI_1 RGCY 8 cut(s) 65, 72, 104, 119, 181, 195, 224, 231
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 51
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 1 cut(s) 157
EcoICRI GAGCTC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 183
FaiI YATR 2 cut(s) 135, 246
FalI AAGNNNNNCTT 2 cut(s) 155, 187
FriOI GRGCYC 1 cut(s) 183
FspBI CTAG 1 cut(s) 253
HindIII AAGCTT 3 cut(s) 63, 222, 229
HinfI GANTC 1 cut(s) 4
Hpy188I TCNGA 2 cut(s) 130, 176
HpyAV CCTTC 5 cut(s) 83, 91, 121, 197, 212
LpnPI CCDG 1 cut(s) 34
LweI GCATC 1 cut(s) 148
MaeI CTAG 1 cut(s) 253
MboII GAAGA 3 cut(s) 50, 163, 175
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 2 cut(s) 36, 124
MseI TTAA 1 cut(s) 219
NspV TTCGAA 1 cut(s) 235
PfeI GAWTC 1 cut(s) 4
Psp124BI GAGCTC 1 cut(s) 183
PspPI GGNCC 1 cut(s) 51
PsrI GAACNNNNNNTAC 1 cut(s) 229
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 219
Sau96I GGNCC 1 cut(s) 51
SduI GDGCHC 1 cut(s) 183
SetI ASST 8 cut(s) 67, 106, 113, 183, 189, 204, 226, 233
SfaNI GCATC 1 cut(s) 148
SfuI TTCGAA 1 cut(s) 235
SgeI CNNG 8 cut(s) 61, 74, 81, 127, 155, 194, 203, 240
SinI GGWCC 1 cut(s) 51
Sse9I AATT 2 cut(s) 36, 124
SspMI CTAG 1 cut(s) 253
SstI GAGCTC 1 cut(s) 183
TaqI TCGA 2 cut(s) 183, 235
TasI AATT 2 cut(s) 36, 124
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TspDTI ATGAA 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 51
XspI CTAG 1 cut(s) 253
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.