Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

21341089 .. 21344528

Gene Structure 3440 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0124000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2151 bp

ATGGAGTCGTCGGATCCACCACCGTCGATCAACTTCGGCACCGCCGAGGCTCTCGACCACATCCGTAGCCTCACCGACGTGGGAGCCATGACGCGCCTCCTCCATGAGTGCATAGCCTACCAACGCGCCCTGGATCTCAACCTCGACCACCTCCTCTCCCAGCGCTCCGACCTCGACAAGCACCTCTCCAATCTCCAGAAATCCTCCCAGGTCCTCGACATCGTCAAGTCCGACGCCGACCACGTCCTCTCCAACGTCTCCTCCACCTGCGACCTCGCCGACCACGTCAGCGCCAAGGTCCGCGAGCTCGACCTCGCCCAGTCGCGCGTCAACTCCACGCTCCTCCGGCTCGACGCGATTGTGGAGCGGACCAACTGCATTGACGGCGTTAAGCAGGCGCTTGACGGCCAGGACTACGAGTCTGCGGCGAAGTTCGTGCAGAGGTTTATGCAGATTGAGTCGGAGTATAGGGATTCGGGTTCGGAGCAGAGGGATCAGCTCATGGAGTCGAAGAAGCAGCTCGAATCGATTGTGAAGAAGAAGCTATCTGCAGCCGTGGACCAGAGGGACCATCCCAATGTGCTGAGGTTCATTAGGCTCTACACGCCGTTGGGGATAGAAGAGGAGGGTCTACAGGCGTATGTGAGTTACTTGAGGAAGGTGATTGGGATGAGATCGAGGCTCGAGTTCGAGCATTTGATGGAGTTGATGGAGCAGAAGAACAATCAGAACCAGCAGGTTAATTTCGTGGGGTGTTTGACCAATTTGTTTAAGGACATTGTGTTGGCAATTGAAGAGAATGGTGAGATTTTGAGGGGGCTTTGTGGGGAAGATGGGATTGTTTATGCCATTTGCGAGCTTCAGGAGGAGTGTGATTCGAGGGGGACTTTGATTTTGAAGAAGTATATGGAGTATAGGAGATTGCCCAAGTTGTCGTCCGAGATAAATGCGCAGAATATGAATTTGCTTGATGTTGGTGTTGCTGGTGTTGGGTCTGAGGGGCCTGACCCGAGAGAGGTTGAGCTTATATTGGAGGAGATACTGTCTTTGATGCAGTTGGGTGAGGATTATACTGAATTCATGGTGTCTAAGATCAAGGGCTTGAGTAATGTGGATCCGGATTTAGCGCCGAGAGCAACCAAGTCTTTTAGGAGTGGAAGTTTTAGCAAAGTGGTTCAGGACATTACTGGGTTTTATGTCATATTAGAGGGTTTCTTTATGGTTGAGAATGTGAGGAAGGCTATAAGGATTGATGAGCATGTGCCTGACAGTCTTACCACTTCTATGGTGGATGATGTTTTCTATGTTCTCCAGAGTTGCTTGCGAAGGGCGATATCCACTTTGAATATCAGCTCAGTGATTGCTGTGTTGAGTGGTGCCAGTAGTTTGTTGAGTAATGAGTACCATGAAGCTTTGCAACACAAGATGAGAGAGCCCAATCTTGGTGCGAAGCTGTTCTTGGGTGGTGTTGGTGTTCAAAAGACTGGCACAGAGATCGCCACGGTTTTGAATAATATGGATGTATTTCCTGCACCAGCTGATAGAGAAAAAGTTAAGTCTTGTTTGTCCGAGTTAGGGGATATGAGCAACACATTCAAGCAAGCTTTGAATGCTGGCTTGGAGCAACTTGTGGCAACTGTGACACCACGTATCCGTCCAGTGCTTGATAATGTTGCGACCATCAGCTATGAGCTATCAGAGGCTGAATATGCGGATAATGAGGTTAATGACCCATGGGTTCAAGGGCTTCTTCATGCTGTTGAGACGAATGCAGCATGGCTGCAGTCACTAATGACTGCCAACAACTACGATTCATTCATACATTTGATAATTGAATTCCTTGTGAAGAGGCTTGAAGTAATTATGATGCAGAAAAGATTTAGTCAACTTGGAGGCCTTCAGCTGGACAGAGATTGTAGGGCATTGGTGAGCCATTTTTCTAGCATGACTCAGAGAACTGTTAGAGACAAGTTTGCTCGGCTTACTCAAATGGCAACCATCCTCAACTTAGAAAAGGTCTCTGAGATTCTGGATTTCTGGGGTGAGAATTCAGGACCTATGACCTGGAGACTGACACCAGCCGAGGTCAGGCGAGTTTTGGGTCTGAGAGTTGATTTTAAATCCGAAGCAATAGCCGCCCTCAAGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

716

Amino Acids

80.34

Weight (kDa)

5.15

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COG4_N	PF20663	62 - 156	4.4e-28	Conserved oligomeric Golgi complex subunit 4, N-terminal
COG4_m	PF08318	196 - 476	2e-75	COG4 transport protein, middle alpha-helical bundle
COG4_C	PF20662	491 - 698	1.6e-57	Conserved oligomeric Golgi complex subunit 4, C-terminal
RINT1_TIP1	PF04437	535 - 673	1.6e-08	RINT-1/TIP-1 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	275
Acc16I	TGCGCA	1 cut(s)	951
Acc36I	ACCTGC	2 cut(s)	275, 727
AccB1I	GGYRCC	2 cut(s)	38, 1376
AccBSI	CCGCTC	1 cut(s)	367
AccI	GTMKAC	1 cut(s)	631
AccII	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
AccIII	TCCGGA	1 cut(s)	1117
AciI	CCGC	6 cut(s)	42, 301, 367, 425, 1712, 2136
AclWI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
AcoI	YGGCCR	1 cut(s)	406
AcsI	RAATTY	4 cut(s)	961, 1076, 1835, 2047
AcuI	CTGAAG	2 cut(s)	845, 1883
AcyI	GRCGYC	1 cut(s)	234
AfaI	GTAC	1 cut(s)	1403
AfeI	AGCGCT	1 cut(s)	164
AfiI	CCNNNNNNNGG	5 cut(s)	1015, 1442, 1575, 1903, 2088
AhdI	GACNNNNNGTC	1 cut(s)	418
AjiI	CACGTC	3 cut(s)	79, 244, 286
AjnI	CCWGG	4 cut(s)	129, 207, 408, 2063
AjuI	GAANNNNNNNTTGG	4 cut(s)	1442, 1474, 1601, 1633
AleI	CACNNNNGTG	1 cut(s)	77
Alw21I	GWGCWC	1 cut(s)	309
Alw26I	GTCTC	5 cut(s)	262, 1757, 1959, 2023, 2062
AlwI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
AlwNI	CAGNNNCTG	1 cut(s)	1703
Ama87I	CYCGRG	2 cut(s)	683, 1009
Aor13HI	TCCGGA	1 cut(s)	1117
Aor51HI	AGCGCT	1 cut(s)	164
AoxI	GGCC	3 cut(s)	406, 1001, 1894
ApeKI	GCWGC	4 cut(s)	517, 551, 1772, 1780
ApoI	RAATTY	4 cut(s)	961, 1076, 1835, 2047
ArsI	GACNNNNNNTTYG	2 cut(s)	877, 909
Asp700I	GAANNNNTTC	1 cut(s)	1454
AspLEI	GCGC	8 cut(s)	96, 128, 165, 293, 327, 400, 952, 1129
AspS9I	GGNCC	7 cut(s)	211, 298, 369, 559, 568, 1001, 2054
AsuHPI	GGTGA	6 cut(s)	64, 673, 815, 1073, 1939, 2054
AvaI	CYCGRG	2 cut(s)	683, 1009
AvaII	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2054
BamHI	GGATCC	2 cut(s)	13, 1114
BanI	GGYRCC	2 cut(s)	38, 1376
BanII	GRGCYC	2 cut(s)	309, 1437
Bbv12I	GWGCWC	1 cut(s)	309
BbvCI	CCTCAGC	1 cut(s)	584
BbvI	GCAGC	4 cut(s)	529, 563, 1767, 1784
BccI	CCATC	6 cut(s)	579, 694, 703, 827, 1688, 2006
BceAI	ACGGC	4 cut(s)	400, 421, 539, 592
BcgI	CGANNNNNNTGC	6 cut(s)	418, 452, 929, 963, 1477, 1511
BciT130I	CCWGG	4 cut(s)	131, 209, 410, 2065
BciVI	GTATCC	1 cut(s)	1661
BcoDI	GTCTC	5 cut(s)	262, 1757, 1959, 2023, 2062
BfaI	CTAG	1 cut(s)	1941
BfmI	CTRYAG	3 cut(s)	549, 632, 1781
BfoI	RGCGCY	4 cut(s)	166, 294, 401, 1130
BfuAI	ACCTGC	2 cut(s)	275, 727
BfuI	GTATCC	1 cut(s)	1661
BisI	GCNGC	6 cut(s)	426, 518, 552, 1773, 1781, 2136
BlsI	GCNGC	6 cut(s)	427, 519, 553, 1774, 1782, 2137
Bme1390I	CCNGG	4 cut(s)	131, 209, 410, 2065
Bme18I	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2054
BmeRI	GACNNNNNGTC	1 cut(s)	418
BmeT110I	CYCGRG	2 cut(s)	683, 1009
BmgBI	CACGTC	3 cut(s)	79, 244, 286
BmgT120I	GGNCC	7 cut(s)	211, 298, 369, 559, 568, 1001, 2054
BmiI	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
BmrFI	CCNGG	4 cut(s)	131, 209, 410, 2065
BmrI	ACTGGG	2 cut(s)	313, 1197
BmsI	GCATC	2 cut(s)	1041, 1857
BmuI	ACTGGG	2 cut(s)	313, 1197
BpmI	CTGGAG	3 cut(s)	179, 1295, 2086
Bpu10I	CCTNAGC	1 cut(s)	584
BpuEI	CTTGAG	3 cut(s)	673, 1123, 2126
Bsa29I	ATCGAT	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	1649
BsaHI	GRCGYC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	2023
BsaJI	CCNNGG	8 cut(s)	45, 129, 207, 294, 555, 1500, 1733, 2082
BsaWI	WCCGGW	1 cut(s)	1117
Bsc4I	CCNNNNNNNGG	5 cut(s)	1015, 1442, 1575, 1903, 2088
Bse1I	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1658
BseAI	TCCGGA	1 cut(s)	1117
BseBI	CCWGG	4 cut(s)	131, 209, 410, 2065
BseCI	ATCGAT	1 cut(s)	527
BseDI	CCNNGG	8 cut(s)	45, 129, 207, 294, 555, 1500, 1733, 2082
BseGI	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 1998
BseLI	CCNNNNNNNGG	5 cut(s)	1015, 1442, 1575, 1903, 2088
BseMII	CTCAG	6 cut(s)	575, 987, 1368, 1964, 2013, 2096
BseNI	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1658
BseRI	GAGGAG	7 cut(s)	89, 143, 250, 332, 638, 881, 1049
BseXI	GCAGC	4 cut(s)	529, 563, 1767, 1784
BseYI	CCCAGC	1 cut(s)	159
BsgI	GTGCAG	2 cut(s)	458, 1515
Bsh1236I	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BshFI	GGCC	3 cut(s)	408, 1003, 1896
BshNI	GGYRCC	2 cut(s)	38, 1376
BshVI	ATCGAT	1 cut(s)	527
BsiHKAI	GWGCWC	1 cut(s)	309
BsiHKCI	CYCGRG	2 cut(s)	683, 1009
BsiSI	CCGG	2 cut(s)	346, 1118
BslFI	GGGAC	2 cut(s)	581, 898
BslI	CCNNNNNNNGG	5 cut(s)	1015, 1442, 1575, 1903, 2088
BsmAI	GTCTC	5 cut(s)	262, 1757, 1959, 2023, 2062
BsmBI	CGTCTC	2 cut(s)	262, 1757
BsmFI	GGGAC	2 cut(s)	581, 898
BsmI	GAATGC	2 cut(s)	1615, 1774
BsnI	GGCC	3 cut(s)	408, 1003, 1896
Bso31I	GGTCTC	1 cut(s)	2023
BsoBI	CYCGRG	2 cut(s)	683, 1009
Bsp1286I	GDGCHC	2 cut(s)	309, 1437
Bsp13I	TCCGGA	1 cut(s)	1117
Bsp143I	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
Bsp19I	CCATGG	1 cut(s)	1733
BspACI	CCGC	6 cut(s)	42, 301, 367, 425, 1712, 2136
BspANI	GGCC	3 cut(s)	408, 1003, 1896
BspCNI	CTCAG	6 cut(s)	576, 988, 1367, 1963, 2014, 2097
BspDI	ATCGAT	1 cut(s)	527
BspEI	TCCGGA	1 cut(s)	1117
BspFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BspLI	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
BspMAI	CTGCAG	2 cut(s)	553, 1785
BspMI	ACCTGC	2 cut(s)	275, 727
BspPI	GGATC	6 cut(s)	8, 21, 141, 501, 1109, 1122
BspT107I	GGYRCC	2 cut(s)	38, 1376
BspTNI	GGTCTC	1 cut(s)	2023
BsrBI	CCGCTC	1 cut(s)	367
BsrI	ACTGG	5 cut(s)	319, 1192, 1380, 1489, 1658
BssECI	CCNNGG	8 cut(s)	45, 129, 207, 294, 555, 1500, 1733, 2082
BssMI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
BssNI	GRCGYC	1 cut(s)	234
BssT1I	CCWWGG	2 cut(s)	294, 1733
Bst2UI	CCWGG	4 cut(s)	131, 209, 410, 2065
Bst4CI	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1639, 1960
Bst6I	CTCTTC	3 cut(s)	615, 789, 1841
BstACI	GRCGYC	1 cut(s)	234
BstBAI	YACGTR	1 cut(s)	1649
BstC8I	GCNNGC	6 cut(s)	305, 396, 857, 1322, 1602, 1615
BstDEI	CTNAG	8 cut(s)	584, 996, 1089, 1354, 1950, 2008, 2022, 2105
BstDSI	CCRYGG	3 cut(s)	555, 1500, 1733
BstF5I	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 1998
BstFNI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstH2I	RGCGCY	4 cut(s)	166, 294, 401, 1130
BstHHI	GCGC	8 cut(s)	96, 128, 165, 293, 327, 400, 952, 1129
BstKTI	GATC	8 cut(s)	16, 30, 136, 496, 677, 1095, 1117, 1497
BstMAI	GTCTC	5 cut(s)	262, 1757, 1959, 2023, 2062
BstMBI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
BstMWI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1610, 1709, 2135
BstNI	CCWGG	4 cut(s)	131, 209, 410, 2065
BstNSI	RCATGY	1 cut(s)	1262
BstSCI	CCNGG	4 cut(s)	129, 207, 408, 2063
BstSFI	CTRYAG	3 cut(s)	549, 632, 1781
BstUI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
BstV1I	GCAGC	4 cut(s)	529, 563, 1767, 1784
BstX2I	RGATCY	3 cut(s)	13, 133, 1114
BstXI	CCANNNNNNTGG	1 cut(s)	1285
BstYI	RGATCY	3 cut(s)	13, 133, 1114
Bsu15I	ATCGAT	1 cut(s)	527
BsuI	GTATCC	1 cut(s)	1661
BsuRI	GGCC	3 cut(s)	408, 1003, 1896
BsuTUI	ATCGAT	1 cut(s)	527
BtgI	CCRYGG	3 cut(s)	555, 1500, 1733
BtrI	CACGTC	3 cut(s)	79, 244, 286
BtsCI	GGATG	6 cut(s)	60, 571, 675, 1297, 1525, 1998
BtsIMutI	CAGTG	2 cut(s)	1362, 1665
BveI	ACCTGC	2 cut(s)	275, 727
Cac8I	GCNNGC	6 cut(s)	305, 396, 857, 1322, 1602, 1615
CaiI	CAGNNNCTG	1 cut(s)	1703
CfoI	GCGC	8 cut(s)	96, 128, 165, 293, 327, 400, 952, 1129
Cfr13I	GGNCC	7 cut(s)	211, 298, 369, 559, 568, 1001, 2054
ClaI	ATCGAT	1 cut(s)	527
CseI	GACGC	4 cut(s)	100, 242, 316, 362
Csp6I	GTAC	1 cut(s)	1402
CviQI	GTAC	1 cut(s)	1402
DdeI	CTNAG	8 cut(s)	584, 996, 1089, 1354, 1950, 2008, 2022, 2105
DpnI	GATC	8 cut(s)	15, 29, 135, 495, 676, 1094, 1116, 1496
DpnII	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
DraI	TTTAAA	1 cut(s)	2119
DriI	GACNNNNNGTC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	406
Eam1104I	CTCTTC	3 cut(s)	615, 789, 1841
Eam1105I	GACNNNNNGTC	1 cut(s)	418
EarI	CTCTTC	3 cut(s)	615, 789, 1841
Ecl136II	GAGCTC	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	294, 1733
Eco147I	AGGCCT	1 cut(s)	1896
Eco24I	GRGCYC	2 cut(s)	309, 1437
Eco31I	GGTCTC	1 cut(s)	2023
Eco32I	GATATC	1 cut(s)	1335
Eco47I	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2054
Eco47III	AGCGCT	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	307
Eco57I	CTGAAG	2 cut(s)	845, 1883
Eco88I	CYCGRG	2 cut(s)	683, 1009
EcoICRI	GAGCTC	1 cut(s)	307
EcoO109I	RGGNCCY	3 cut(s)	211, 1001, 2054
EcoRI	GAATTC	3 cut(s)	1076, 1835, 2047
EcoRII	CCWGG	4 cut(s)	129, 207, 408, 2063
EcoRV	GATATC	1 cut(s)	1335
EcoT14I	CCWWGG	2 cut(s)	294, 1733
EcoT38I	GRGCYC	2 cut(s)	309, 1437
ErhI	CCWWGG	2 cut(s)	294, 1733
Esp3I	CGTCTC	2 cut(s)	262, 1757
FalI	AAGNNNNNCTT	4 cut(s)	1442, 1474, 1734, 1766
FaqI	GGGAC	2 cut(s)	581, 898
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	426, 518, 552, 1773, 1781, 2136
FokI	GGATG	6 cut(s)	47, 558, 682, 1304, 1532, 1985
FriOI	GRGCYC	2 cut(s)	309, 1437
Fsp4HI	GCNGC	6 cut(s)	426, 518, 552, 1773, 1781, 2136
FspBI	CTAG	1 cut(s)	1941
FspI	TGCGCA	1 cut(s)	951
GlaI	GCGC	8 cut(s)	95, 127, 164, 292, 326, 399, 951, 1128
GluI	GCNGC	6 cut(s)	426, 518, 552, 1773, 1781, 2136
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	3 cut(s)	179, 1295, 2086
HaeII	RGCGCY	4 cut(s)	166, 294, 401, 1130
HaeIII	GGCC	3 cut(s)	408, 1003, 1896
HapII	CCGG	2 cut(s)	346, 1118
HgaI	GACGC	4 cut(s)	100, 242, 316, 362
HhaI	GCGC	8 cut(s)	96, 128, 165, 293, 327, 400, 952, 1129
Hin1I	GRCGYC	1 cut(s)	234
Hin6I	GCGC	8 cut(s)	94, 126, 163, 291, 325, 398, 950, 1127
HinP1I	GCGC	8 cut(s)	94, 126, 163, 291, 325, 398, 950, 1127
HincII	GTYRAC	2 cut(s)	331, 1886
HindII	GTYRAC	2 cut(s)	331, 1886
HindIII	AAGCTT	2 cut(s)	1410, 1602
HpaII	CCGG	2 cut(s)	346, 1118
HphI	GGTGA	6 cut(s)	64, 673, 815, 1073, 1939, 2054
Hpy166II	GTNNAC	4 cut(s)	331, 559, 632, 1886
Hpy188III	TCNNGA	8 cut(s)	53, 196, 863, 1118, 1178, 1312, 2030, 2052
Hpy8I	GTNNAC	4 cut(s)	331, 559, 632, 1886
Hpy99I	CGWCG	5 cut(s)	13, 28, 80, 236, 356
HpyAV	CCTTC	4 cut(s)	652, 1231, 1320, 1907
HpyCH4III	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1639, 1960
HpyCH4IV	ACGT	5 cut(s)	78, 243, 255, 285, 1648
HpyF10VI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1610, 1709, 2135
HpyF3I	CTNAG	8 cut(s)	584, 996, 1089, 1354, 1950, 2008, 2022, 2105
HpySE526I	ACGT	5 cut(s)	78, 243, 255, 285, 1648
Hsp92I	GRCGYC	1 cut(s)	234
HspAI	GCGC	8 cut(s)	94, 126, 163, 291, 325, 398, 950, 1127
Kpn2I	TCCGGA	1 cut(s)	1117
Kzo9I	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
LmnI	GCTCC	7 cut(s)	83, 170, 345, 364, 484, 712, 1621
Lsp1109I	GCAGC	4 cut(s)	529, 563, 1767, 1784
LweI	GCATC	2 cut(s)	1041, 1857
MaeI	CTAG	1 cut(s)	1941
MaeII	ACGT	5 cut(s)	78, 243, 255, 285, 1648
MaeIII	GTNAC	3 cut(s)	647, 1639, 1785
MalI	GATC	8 cut(s)	15, 29, 135, 495, 676, 1094, 1116, 1496
MbiI	CCGCTC	1 cut(s)	367
MboI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
MfeI	CAATTG	1 cut(s)	789
MflI	RGATCY	3 cut(s)	13, 133, 1114
MhlI	GDGCHC	2 cut(s)	309, 1437
MluCI	AATT	9 cut(s)	742, 763, 789, 961, 1076, 1830, 1835, 1860, 2047
MlyI	GAGTC	5 cut(s)	14, 428, 467, 515, 1942
MmeI	TCCRAC	4 cut(s)	192, 255, 276, 441
MroI	TCCGGA	1 cut(s)	1117
MroXI	GAANNNNTTC	1 cut(s)	1454
MseI	TTAA	6 cut(s)	390, 741, 771, 1554, 1725, 2118
MslI	CAYNNNNRTG	3 cut(s)	77, 576, 1283
MspA1I	CMGCKG	2 cut(s)	1538, 1903
MspI	CCGG	2 cut(s)	346, 1118
MspR9I	CCNGG	4 cut(s)	131, 209, 410, 2065
MunI	CAATTG	1 cut(s)	789
Mva1269I	GAATGC	2 cut(s)	1615, 1774
MvaI	CCWGG	4 cut(s)	131, 209, 410, 2065
MvnI	CGCG	6 cut(s)	94, 126, 303, 325, 327, 356
MwoI	GCNNNNNNNGC	7 cut(s)	346, 384, 604, 1133, 1610, 1709, 2135
NcoI	CCATGG	1 cut(s)	1733
NdeII	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
NlaIV	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
NmeAIII	GCCGAG	4 cut(s)	70, 1155, 1957, 2107
NmuCI	GTSAC	2 cut(s)	1639, 1785
NsbI	TGCGCA	1 cut(s)	951
NspI	RCATGY	1 cut(s)	1262
OliI	CACNNNNGTG	1 cut(s)	77
PaeR7I	CTCGAG	1 cut(s)	683
PaqCI	CACCTGC	1 cut(s)	275
PceI	AGGCCT	1 cut(s)	1896
PcsI	WCGNNNNNNNCGW	4 cut(s)	42, 228, 240, 282
PctI	GAATGC	2 cut(s)	1615, 1774
PdmI	GAANNNNTTC	1 cut(s)	1454
PfeI	GAWTC	5 cut(s)	473, 524, 875, 1811, 2026
PflFI	GACNNNGTC	3 cut(s)	221, 242, 284
PkrI	GCNGC	6 cut(s)	427, 519, 553, 1774, 1782, 2137
PleI	GAGTC	5 cut(s)	13, 427, 466, 514, 1942
PpsI	GAGTC	5 cut(s)	13, 427, 466, 514, 1942
Ppu21I	YACGTR	1 cut(s)	1649
PpuMI	RGGWCCY	2 cut(s)	211, 2054
Psp124BI	GAGCTC	1 cut(s)	309
Psp5II	RGGWCCY	2 cut(s)	211, 2054
Psp6I	CCWGG	4 cut(s)	129, 207, 408, 2063
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	4 cut(s)	129, 207, 408, 2063
PspN4I	GGNNCC	7 cut(s)	15, 40, 85, 569, 1002, 1116, 1378
PspPI	GGNCC	7 cut(s)	211, 298, 369, 559, 568, 1001, 2054
PspPPI	RGGWCCY	2 cut(s)	211, 2054
PspXI	VCTCGAGB	1 cut(s)	683
PstI	CTGCAG	2 cut(s)	553, 1785
PstNI	CAGNNNCTG	1 cut(s)	1703
PsuI	RGATCY	3 cut(s)	13, 133, 1114
PsyI	GACNNNGTC	3 cut(s)	221, 242, 284
PvuII	CAGCTG	2 cut(s)	1538, 1903
RsaI	GTAC	1 cut(s)	1403
RsaNI	GTAC	1 cut(s)	1402
RseI	CAYNNNNRTG	3 cut(s)	77, 576, 1283
SacI	GAGCTC	1 cut(s)	309
SaqAI	TTAA	6 cut(s)	390, 741, 771, 1554, 1725, 2118
SatI	GCNGC	6 cut(s)	426, 518, 552, 1773, 1781, 2136
Sau3AI	GATC	8 cut(s)	13, 27, 133, 493, 674, 1092, 1114, 1494
Sau96I	GGNCC	7 cut(s)	211, 298, 369, 559, 568, 1001, 2054
SchI	GAGTC	5 cut(s)	14, 428, 467, 515, 1942
ScrFI	CCNGG	4 cut(s)	131, 209, 410, 2065
SduI	GDGCHC	2 cut(s)	309, 1437
SfaNI	GCATC	2 cut(s)	1041, 1857
SfcI	CTRYAG	3 cut(s)	549, 632, 1781
Sfr274I	CTCGAG	1 cut(s)	683
SinI	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2054
SlaI	CTCGAG	1 cut(s)	683
SmiMI	CAYNNNNRTG	3 cut(s)	77, 576, 1283
SmlI	CTYRAG	4 cut(s)	652, 683, 1102, 2141
SmoI	CTYRAG	4 cut(s)	652, 683, 1102, 2141
Sse9I	AATT	9 cut(s)	742, 763, 789, 961, 1076, 1830, 1835, 1860, 2047
SseBI	AGGCCT	1 cut(s)	1896
SsiI	CCGC	6 cut(s)	42, 301, 367, 425, 1712, 2136
SspMI	CTAG	1 cut(s)	1941
SstI	GAGCTC	1 cut(s)	309
StuI	AGGCCT	1 cut(s)	1896
StyD4I	CCNGG	4 cut(s)	129, 207, 408, 2063
StyI	CCWWGG	2 cut(s)	294, 1733
TaaI	ACNGT	6 cut(s)	24, 1044, 1271, 1504, 1639, 1960
TaiI	ACGT	5 cut(s)	81, 246, 258, 288, 1651
TasI	AATT	9 cut(s)	742, 763, 789, 961, 1076, 1830, 1835, 1860, 2047
TauI	GCSGC	2 cut(s)	428, 2138
TfiI	GAWTC	5 cut(s)	473, 524, 875, 1811, 2026
Tru1I	TTAA	6 cut(s)	390, 741, 771, 1554, 1725, 2118
Tru9I	TTAA	6 cut(s)	390, 741, 771, 1554, 1725, 2118
TscAI	CASTG	2 cut(s)	1362, 1665
TseFI	GTSAC	2 cut(s)	1639, 1785
TseI	GCWGC	4 cut(s)	517, 551, 1772, 1780
Tsp45I	GTSAC	2 cut(s)	1639, 1785
TspDTI	ATGAA	7 cut(s)	580, 974, 1069, 1422, 1742, 1803, 1807
TspGWI	ACGGA	2 cut(s)	53, 1643
TspRI	CASTG	2 cut(s)	1362, 1665
Tth111I	GACNNNGTC	3 cut(s)	221, 242, 284
VpaK11BI	GGWCC	6 cut(s)	211, 298, 369, 559, 568, 2054
XapI	RAATTY	4 cut(s)	961, 1076, 1835, 2047
XceI	RCATGY	1 cut(s)	1262
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1285
XhoI	CTCGAG	1 cut(s)	683
XmiI	GTMKAC	1 cut(s)	631
XmnI	GAANNNNTTC	1 cut(s)	1454
XspI	CTAG	1 cut(s)	1941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.