Rh2DG334300

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
42867006 .. 42867573
568 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG334300.1

Sequence Viewer

Length: 438 bp
ATGAAGTTTCGACCAAATGATGCTTTTGTATGCCTTGTGGATTGGGCCCTTGTTCTACAACAAAAAGGGAATTTAAAGGAGCTGGTTGATCAGCGGCTCGGATCAGATTTCAACGAGGAACAAGCGATTAGAATGGCTAAAGTAGCTTTGTTATGCACCAATTCAGCACCATCGCTTAGGCCTACCATGTCCGTAGTAGTGAGTATGCTGGAAGGGCGTACCCCCGTCCCTGAGTTGATCATGGATCCTAGCATTTATGGTGATAAAATGAGGATGTCAGCCTTGAGACAACAGTTTGATCAAATTGTAAATGACAGCTCAATTCGATCTCAAACGAGCTACACTGATTCTCAGAGCCTCCTTCGTTCATCAGATGTACCATGGACTGGTTCTGCGGGTACTACTACGTCTTCAGATCTCTACAAACTTAATCCTTAG

Protein Analysis

145

Amino Acids

16.15

Weight (kDa)

5.38

Isoelectric Point (pI)

53.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 386
AciI CCGC 2 cut(s) 94, 395
AclWI GGATC 3 cut(s) 109, 239, 252
AcsI RAATTY 1 cut(s) 70
AcuI CTGAAG 1 cut(s) 396
AfaI GTAC 3 cut(s) 220, 378, 400
AfiI CCNNNNNNNGG 1 cut(s) 386
AgsI TTSAA 1 cut(s) 112
AluBI AGCT 4 cut(s) 82, 146, 318, 339
AluI AGCT 4 cut(s) 82, 146, 318, 339
Alw26I GTCTC 1 cut(s) 280
AlwI GGATC 3 cut(s) 109, 239, 252
AoxI GGCC 2 cut(s) 45, 179
ApaI GGGCCC 1 cut(s) 49
ApoI RAATTY 1 cut(s) 70
AspS9I GGNCC 2 cut(s) 45, 46
AsuHPI GGTGA 1 cut(s) 272
BaeGI GKGCMC 1 cut(s) 49
BamHI GGATCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 49
BbsI GAAGAC 1 cut(s) 402
BccI CCATC 1 cut(s) 178
BclI TGATCA 3 cut(s) 88, 237, 298
BcoDI GTCTC 1 cut(s) 280
BfaI CTAG 1 cut(s) 249
BglII AGATCT 1 cut(s) 415
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
BmgT120I GGNCC 2 cut(s) 45, 46
BmiI GGNNCC 2 cut(s) 47, 246
BmsI GCATC 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 304
BsaJI CCNNGG 1 cut(s) 380
Bsc4I CCNNNNNNNGG 1 cut(s) 386
Bse1I ACTGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 380
BseGI GGATG 1 cut(s) 279
BseLI CCNNNNNNNGG 1 cut(s) 386
BseMII CTCAG 2 cut(s) 222, 365
BseNI ACTGG 1 cut(s) 391
BseSI GKGCMC 1 cut(s) 49
BshFI GGCC 2 cut(s) 47, 181
BslFI GGGAC 1 cut(s) 212
BslI CCNNNNNNNGG 1 cut(s) 386
BsmAI GTCTC 1 cut(s) 280
BsmFI GGGAC 1 cut(s) 212
BsnI GGCC 2 cut(s) 47, 181
Bsp120I GGGCCC 1 cut(s) 45
Bsp1286I GDGCHC 1 cut(s) 49
Bsp143I GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
Bsp19I CCATGG 1 cut(s) 380
BspACI CCGC 2 cut(s) 94, 395
BspANI GGCC 2 cut(s) 47, 181
BspCNI CTCAG 2 cut(s) 223, 364
BspLI GGNNCC 2 cut(s) 47, 246
BspPI GGATC 3 cut(s) 109, 239, 252
BsrI ACTGG 1 cut(s) 391
BssECI CCNNGG 1 cut(s) 380
BssMI GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
BssT1I CCWWGG 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 294
BstDEI CTNAG 4 cut(s) 176, 231, 351, 435
BstDSI CCRYGG 1 cut(s) 380
BstF5I GGATG 1 cut(s) 279
BstKTI GATC 7 cut(s) 91, 104, 240, 247, 301, 329, 418
BstMAI GTCTC 1 cut(s) 280
BstMBI GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
BstMWI GCNNNNNNNGC 2 cut(s) 143, 214
BstSLI GKGCMC 1 cut(s) 49
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 2 cut(s) 244, 415
BstYI RGATCY 2 cut(s) 244, 415
BsuRI GGCC 2 cut(s) 47, 181
BtgI CCRYGG 1 cut(s) 380
BtgZI GCGATG 1 cut(s) 156
BtsCI GGATG 1 cut(s) 279
BtsIMutI CAGTG 1 cut(s) 342
Cfr13I GGNCC 2 cut(s) 45, 46
Csp6I GTAC 3 cut(s) 219, 377, 399
CviAII CATG 3 cut(s) 187, 241, 381
CviQI GTAC 3 cut(s) 219, 377, 399
DdeI CTNAG 4 cut(s) 176, 231, 351, 435
DpnI GATC 7 cut(s) 90, 103, 239, 246, 300, 328, 417
DpnII GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
DraI TTTAAA 1 cut(s) 75
Eco130I CCWWGG 1 cut(s) 380
Eco147I AGGCCT 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 49
Eco57I CTGAAG 1 cut(s) 396
EcoO109I RGGNCCY 1 cut(s) 46
EcoT14I CCWWGG 1 cut(s) 380
EcoT38I GRGCYC 1 cut(s) 49
ErhI CCWWGG 1 cut(s) 380
FaeI CATG 3 cut(s) 190, 244, 384
FaiI YATR 7 cut(s) 31, 154, 188, 206, 242, 258, 382
FaqI GGGAC 1 cut(s) 212
FatI CATG 3 cut(s) 186, 240, 380
FauI CCCGC 1 cut(s) 388
FbaI TGATCA 3 cut(s) 88, 237, 298
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 1 cut(s) 286
FriOI GRGCYC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 1 cut(s) 249
GluI GCNGC 1 cut(s) 95
HaeIII GGCC 2 cut(s) 47, 181
Hin1II CATG 3 cut(s) 190, 244, 384
HinfI GANTC 1 cut(s) 347
HphI GGTGA 1 cut(s) 272
Hpy188I TCNGA 5 cut(s) 101, 106, 354, 373, 415
HpyAV CCTTC 2 cut(s) 206, 371
HpyCH4III ACNGT 1 cut(s) 294
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 214
HpyF3I CTNAG 4 cut(s) 176, 231, 351, 435
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 3 cut(s) 190, 244, 384
Ksp22I TGATCA 3 cut(s) 88, 237, 298
Kzo9I GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
LmnI GCTCC 1 cut(s) 79
LpnPI CCDG 4 cut(s) 68, 194, 243, 372
LweI GCATC 1 cut(s) 10
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 407
MalI GATC 7 cut(s) 90, 103, 239, 246, 300, 328, 417
MboI GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
MboII GAAGA 1 cut(s) 402
MflI RGATCY 2 cut(s) 244, 415
MhlI GDGCHC 1 cut(s) 49
MluCI AATT 4 cut(s) 70, 160, 303, 321
MnlI CCTC 3 cut(s) 109, 264, 368
MseI TTAA 2 cut(s) 74, 429
MspA1I CMGCKG 1 cut(s) 94
MwoI GCNNNNNNNGC 2 cut(s) 143, 214
NcoI CCATGG 1 cut(s) 380
NdeII GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
NlaIII CATG 3 cut(s) 190, 244, 384
NlaIV GGNNCC 2 cut(s) 47, 246
PceI AGGCCT 1 cut(s) 181
PfeI GAWTC 1 cut(s) 347
PflMI CCANNNNNTGG 1 cut(s) 386
PkrI GCNGC 1 cut(s) 96
PspN4I GGNNCC 2 cut(s) 47, 246
PspOMI GGGCCC 1 cut(s) 45
PspPI GGNCC 2 cut(s) 45, 46
PsuI RGATCY 2 cut(s) 244, 415
RsaI GTAC 3 cut(s) 220, 378, 400
RsaNI GTAC 3 cut(s) 219, 377, 399
SaqAI TTAA 2 cut(s) 74, 429
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 7 cut(s) 88, 101, 237, 244, 298, 326, 415
Sau96I GGNCC 2 cut(s) 45, 46
SduI GDGCHC 1 cut(s) 49
SetI ASST 5 cut(s) 84, 148, 320, 341, 410
SfaNI GCATC 1 cut(s) 10
SmlI CTYRAG 1 cut(s) 283
SmoI CTYRAG 1 cut(s) 283
Sse9I AATT 4 cut(s) 70, 160, 303, 321
SseBI AGGCCT 1 cut(s) 181
SsiI CCGC 2 cut(s) 94, 395
SspMI CTAG 1 cut(s) 249
StuI AGGCCT 1 cut(s) 181
StyI CCWWGG 1 cut(s) 380
TaaI ACNGT 1 cut(s) 294
TaiI ACGT 1 cut(s) 410
TaqI TCGA 2 cut(s) 10, 325
TasI AATT 4 cut(s) 70, 160, 303, 321
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 1 cut(s) 347
Tru1I TTAA 2 cut(s) 74, 429
Tru9I TTAA 2 cut(s) 74, 429
TscAI CASTG 1 cut(s) 349
TspDTI ATGAA 2 cut(s) 17, 357
TspGWI ACGGA 1 cut(s) 181
TspRI CASTG 1 cut(s) 349
Van91I CCANNNNNTGG 1 cut(s) 386
XapI RAATTY 1 cut(s) 70
XspI CTAG 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.