Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

9224998 .. 9225624

Gene Structure 627 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031892

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGCACCGGATCGGAATATGCTCTATGGGGTTAATTGTTTGACGTTTAAAGCAGATGTCTACAGTTTCGGAGTTGTTGAATTAGAAACTGTTACAGGAAGGAACAACTTGAAATATCGACCCAATGAGAACATTCAATGTCTTATGGATTGGGCTCTTGTATTGCAACAAAGAGGGAACTTACTGGAGCTGGTGGATCCGAGGTTGGGGTCCGATTTCAATAAGAAAGAGGCGATTAGAATGATCAAAGTAGCTCTACTGTGCGCCAATCCAACAGCTGCACTTAGGCCTATCATGTCTGAAGTAGTGAGTATGCTTGAAGGGCGGACCCCCGTGGATGAAGTGGCTCTGGATCCAAGAATCCATGGTGATGAAATGACGAGGTTAAGAGCCTTCGAAGAGCAGTTTGATCACAGTACTGCACAAGGGAGCTCCCCAAGTGGAAGTCATGGCCTCATTCGTTCATCAGATGCACCATGGACCGGTTCTTCTGTTACCACTACGTCTCCAGATCTCTATAAATGTAGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

178

Amino Acids

19.62

Weight (kDa)

5.39

Isoelectric Point (pI)

32.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AccI	GTMKAC	1 cut(s)	60
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	5 cut(s)	18, 191, 204, 347, 360
AcuI	CTGAAG	1 cut(s)	321
AfaI	GTAC	1 cut(s)	418
AfiI	CCNNNNNNNGG	2 cut(s)	206, 482
AgeI	ACCGGT	1 cut(s)	482
AgsI	TTSAA	5 cut(s)	80, 112, 137, 220, 320
AluBI	AGCT	4 cut(s)	190, 254, 278, 432
AluI	AGCT	4 cut(s)	190, 254, 278, 432
Alw21I	GWGCWC	1 cut(s)	434
Alw26I	GTCTC	1 cut(s)	510
AlwI	GGATC	5 cut(s)	18, 191, 204, 347, 360
AoxI	GGCC	2 cut(s)	287, 451
ApeKI	GCWGC	1 cut(s)	278
AsiGI	ACCGGT	1 cut(s)	482
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	3 cut(s)	210, 327, 480
AsuHPI	GGTGA	1 cut(s)	380
AsuII	TTCGAA	1 cut(s)	396
AvaII	GGWCC	3 cut(s)	210, 327, 480
BamHI	GGATCC	2 cut(s)	196, 352
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	2 cut(s)	157, 434
Bbv12I	GWGCWC	1 cut(s)	434
BbvI	GCAGC	1 cut(s)	265
BclI	TGATCA	2 cut(s)	243, 409
BcoDI	GTCTC	1 cut(s)	510
BfmI	CTRYAG	1 cut(s)	61
BglII	AGATCT	1 cut(s)	511
BisI	GCNGC	1 cut(s)	279
BlsI	GCNGC	1 cut(s)	280
BmcAI	AGTACT	1 cut(s)	418
Bme18I	GGWCC	3 cut(s)	210, 327, 480
BmgT120I	GGNCC	3 cut(s)	210, 327, 480
BmiI	GGNNCC	5 cut(s)	6, 198, 211, 329, 354
BmsI	GCATC	1 cut(s)	460
BpmI	CTGGAG	2 cut(s)	206, 492
Bpu14I	TTCGAA	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	200, 333, 364, 476
BsaWI	WCCGGW	2 cut(s)	7, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	490, 520
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 482
Bse118I	RCCGGY	1 cut(s)	482
Bse1I	ACTGG	1 cut(s)	189
BseDI	CCNNGG	4 cut(s)	200, 333, 364, 476
BseGI	GGATG	1 cut(s)	343
BseLI	CCNNNNNNNGG	2 cut(s)	206, 482
BseNI	ACTGG	1 cut(s)	189
BseXI	GCAGC	1 cut(s)	265
BsgI	GTGCAG	2 cut(s)	264, 405
BshFI	GGCC	2 cut(s)	289, 453
BshNI	GGYRCC	1 cut(s)	4
BshTI	ACCGGT	1 cut(s)	482
BsiHKAI	GWGCWC	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	8, 483
BslI	CCNNNNNNNGG	2 cut(s)	206, 482
BsmAI	GTCTC	1 cut(s)	510
BsmBI	CGTCTC	1 cut(s)	510
BsnI	GGCC	2 cut(s)	289, 453
Bsp119I	TTCGAA	1 cut(s)	396
Bsp1286I	GDGCHC	2 cut(s)	157, 434
Bsp143I	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
Bsp19I	CCATGG	2 cut(s)	364, 476
BspACI	CCGC	1 cut(s)	325
BspANI	GGCC	2 cut(s)	289, 453
BspLI	GGNNCC	5 cut(s)	6, 198, 211, 329, 354
BspPI	GGATC	5 cut(s)	18, 191, 204, 347, 360
BspQI	GCTCTTC	1 cut(s)	393
BspT104I	TTCGAA	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	482
BsrI	ACTGG	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	482
BssECI	CCNNGG	4 cut(s)	200, 333, 364, 476
BssMI	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
BssT1I	CCWWGG	2 cut(s)	364, 476
Bst4CI	ACNGT	4 cut(s)	65, 91, 261, 416
Bst6I	CTCTTC	1 cut(s)	393
BstBI	TTCGAA	1 cut(s)	396
BstDEI	CTNAG	1 cut(s)	284
BstDSI	CCRYGG	3 cut(s)	333, 364, 476
BstF5I	GGATG	1 cut(s)	343
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	6 cut(s)	13, 199, 246, 355, 412, 514
BstMAI	GTCTC	1 cut(s)	510
BstMBI	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
BstMWI	GCNNNNNNNGC	1 cut(s)	322
BstSFI	CTRYAG	1 cut(s)	61
BstV1I	GCAGC	1 cut(s)	265
BstX2I	RGATCY	3 cut(s)	196, 352, 511
BstYI	RGATCY	3 cut(s)	196, 352, 511
BsuRI	GGCC	2 cut(s)	289, 453
BtgI	CCRYGG	3 cut(s)	333, 364, 476
BtsCI	GGATG	1 cut(s)	343
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	482
Cfr13I	GGNCC	3 cut(s)	210, 327, 480
Csp6I	GTAC	1 cut(s)	417
CspAI	ACCGGT	1 cut(s)	482
CviAII	CATG	4 cut(s)	295, 365, 449, 477
CviJI	RGCY	9 cut(s)	155, 190, 254, 278, 289, 347, 392, 432, 453
CviKI_1	RGCY	9 cut(s)	155, 190, 254, 278, 289, 347, 392, 432, 453
CviQI	GTAC	1 cut(s)	417
DdeI	CTNAG	1 cut(s)	284
DpnI	GATC	6 cut(s)	12, 198, 245, 354, 411, 513
DpnII	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
DraI	TTTAAA	1 cut(s)	49
Eam1104I	CTCTTC	1 cut(s)	393
EarI	CTCTTC	1 cut(s)	393
EciI	GGCGGA	1 cut(s)	340
Ecl136II	GAGCTC	1 cut(s)	432
Eco130I	CCWWGG	2 cut(s)	364, 476
Eco147I	AGGCCT	1 cut(s)	289
Eco24I	GRGCYC	2 cut(s)	157, 434
Eco47I	GGWCC	3 cut(s)	210, 327, 480
Eco53kI	GAGCTC	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	321
EcoICRI	GAGCTC	1 cut(s)	432
EcoT14I	CCWWGG	2 cut(s)	364, 476
EcoT38I	GRGCYC	2 cut(s)	157, 434
ErhI	CCWWGG	2 cut(s)	364, 476
Esp3I	CGTCTC	1 cut(s)	510
FaeI	CATG	4 cut(s)	298, 368, 452, 480
FaiI	YATR	9 cut(s)	20, 27, 146, 296, 314, 366, 450, 478, 519
FatI	CATG	4 cut(s)	294, 364, 448, 476
FbaI	TGATCA	2 cut(s)	243, 409
FblI	GTMKAC	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	279
FokI	GGATG	1 cut(s)	350
FriOI	GRGCYC	2 cut(s)	157, 434
Fsp4HI	GCNGC	1 cut(s)	279
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	1 cut(s)	279
GsuI	CTGGAG	2 cut(s)	206, 492
HaeIII	GGCC	2 cut(s)	289, 453
HapII	CCGG	2 cut(s)	8, 483
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	4 cut(s)	298, 368, 452, 480
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HinfI	GANTC	1 cut(s)	360
HpaII	CCGG	2 cut(s)	8, 483
HphI	GGTGA	1 cut(s)	380
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	6 cut(s)	15, 71, 201, 214, 301, 469
Hpy188III	TCNNGA	2 cut(s)	350, 509
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	3 cut(s)	93, 314, 403
HpyCH4III	ACNGT	4 cut(s)	65, 91, 261, 416
HpyCH4IV	ACGT	2 cut(s)	44, 503
HpyCH4V	TGCA	4 cut(s)	166, 281, 422, 473
HpyF10VI	GCNNNNNNNGC	1 cut(s)	322
HpyF3I	CTNAG	1 cut(s)	284
HpySE526I	ACGT	2 cut(s)	44, 503
Hsp92II	CATG	4 cut(s)	298, 368, 452, 480
HspAI	GCGC	1 cut(s)	264
Ksp22I	TGATCA	2 cut(s)	243, 409
Kzo9I	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
LguI	GCTCTTC	1 cut(s)	393
LmnI	GCTCC	3 cut(s)	187, 429, 437
LpnPI	CCDG	7 cut(s)	21, 81, 170, 176, 335, 496, 522
Lsp1109I	GCAGC	1 cut(s)	265
LweI	GCATC	1 cut(s)	460
MaeII	ACGT	2 cut(s)	44, 503
MaeIII	GTNAC	2 cut(s)	91, 493
MalI	GATC	6 cut(s)	12, 198, 245, 354, 411, 513
MboI	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
MboII	GAAGA	2 cut(s)	410, 480
MflI	RGATCY	3 cut(s)	196, 352, 511
MhlI	GDGCHC	2 cut(s)	157, 434
MluCI	AATT	2 cut(s)	34, 80
MmeI	TCCRAC	1 cut(s)	296
MnlI	CCTC	5 cut(s)	167, 195, 223, 375, 464
MseI	TTAA	3 cut(s)	33, 48, 386
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	278
MspI	CCGG	2 cut(s)	8, 483
MwoI	GCNNNNNNNGC	1 cut(s)	322
NcoI	CCATGG	2 cut(s)	364, 476
NdeII	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
NlaIII	CATG	4 cut(s)	298, 368, 452, 480
NlaIV	GGNNCC	5 cut(s)	6, 198, 211, 329, 354
NspV	TTCGAA	1 cut(s)	396
PceI	AGGCCT	1 cut(s)	289
PciSI	GCTCTTC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	360
PinAI	ACCGGT	1 cut(s)	482
PkrI	GCNGC	1 cut(s)	280
Psp124BI	GAGCTC	1 cut(s)	434
PspN4I	GGNNCC	5 cut(s)	6, 198, 211, 329, 354
PspPI	GGNCC	3 cut(s)	210, 327, 480
PsuI	RGATCY	3 cut(s)	196, 352, 511
PvuII	CAGCTG	1 cut(s)	278
RsaI	GTAC	1 cut(s)	418
RsaNI	GTAC	1 cut(s)	417
RseI	CAYNNNNRTG	1 cut(s)	369
SacI	GAGCTC	1 cut(s)	434
SapI	GCTCTTC	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	33, 48, 386
SatI	GCNGC	1 cut(s)	279
Sau3AI	GATC	6 cut(s)	10, 196, 243, 352, 409, 511
Sau96I	GGNCC	3 cut(s)	210, 327, 480
ScaI	AGTACT	1 cut(s)	418
SduI	GDGCHC	2 cut(s)	157, 434
SetI	ASST	8 cut(s)	47, 192, 206, 256, 280, 386, 434, 506
SfaNI	GCATC	1 cut(s)	460
SfcI	CTRYAG	1 cut(s)	61
SfuI	TTCGAA	1 cut(s)	396
SinI	GGWCC	3 cut(s)	210, 327, 480
SmiMI	CAYNNNNRTG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	34, 80
SseBI	AGGCCT	1 cut(s)	289
SsiI	CCGC	1 cut(s)	325
SstI	GAGCTC	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	289
StyI	CCWWGG	2 cut(s)	364, 476
TaaI	ACNGT	4 cut(s)	65, 91, 261, 416
TaiI	ACGT	2 cut(s)	47, 506
TaqI	TCGA	2 cut(s)	118, 396
TasI	AATT	2 cut(s)	34, 80
TatI	WGTACW	1 cut(s)	416
TfiI	GAWTC	1 cut(s)	360
Tru1I	TTAA	3 cut(s)	33, 48, 386
Tru9I	TTAA	3 cut(s)	33, 48, 386
TseI	GCWGC	1 cut(s)	278
TspDTI	ATGAA	3 cut(s)	354, 387, 453
VpaK11BI	GGWCC	3 cut(s)	210, 327, 480
XmiI	GTMKAC	1 cut(s)	60
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.