Rw5G021410

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
28823963 .. 28831839
7877 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G021410.1

Sequence Viewer

Length: 702 bp
ATGCTAATTTCTAGAGCTCTGAGAGGACTGGATCTGCAAACTGGCTTTTTCACGTTCAAGCAAATAAAAGCTGCCACTTATAACTTTGATCCTGTGAACAAAATTGGGGAAGGTGGTTTTGGATCTGTGTACAAGGGGATACTACTGGATGGTACTATAATTGCAGTAAAACAATTATCTGCAAAATCAAAGCAAGGAAATTGTGAATTTTTGAACGAAATAGGCATGATTTCTAGTTTACAGCATCCTAATGTCGTGGGATTGTATGGATGTTGCATTGAAGCAAATCAGTTACTTTTGGTATATGAATACATGGAGAACAAGAGCCTTGCACGTGCTTTGTTTGGTCCAGAGGGAGGTCCACTCAAATTGGACTGGCCTACGAGGCAGAAAATATGCATAGGCATAGCTAAAAGTCTGGCATTTTTGCATGAGGAATCAGCACTGAAGGTTGTCCACAGAGATATTAAATCTACGAATGTATTGCTGGACCAAGACCTTAACGCTAAGATCTCGGAATTTGGTCTGGCCAAGCTTGACGAAGAAGAGAATACCCACATTAGCACCAGAGTTGCTGGAACTGTAGGATACATGGCGCCTGAATATGCACTATGGGGTTATTTAACGTACAAAGCAGATGTTTGGTGTTGTCACATTGGAAGTTGTTGTTGGAAAGAACAACGCGAAATTTACAGCAGATGA

Protein Analysis

233

Amino Acids

25.97

Weight (kDa)

6.94

Isoelectric Point (pI)

39.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 32 - 218 9.9e-41 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 33 - 216 3.2e-38 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 81
AccB1I GGYRCC 1 cut(s) 595
AccII CGCG 1 cut(s) 684
AclWI GGATC 3 cut(s) 39, 83, 130
AcoI YGGCCR 1 cut(s) 528
AcsI RAATTY 3 cut(s) 206, 518, 687
AcuI CTGAAG 1 cut(s) 467
AcvI CACGTG 1 cut(s) 335
AcyI GRCGYC 1 cut(s) 596
AfaI GTAC 3 cut(s) 131, 154, 629
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 3 cut(s) 58, 214, 281
AjuI GAANNNNNNNTTGG 4 cut(s) 102, 134, 652, 684
AluBI AGCT 4 cut(s) 17, 71, 410, 535
AluI AGCT 4 cut(s) 17, 71, 410, 535
Alw21I GWGCWC 1 cut(s) 19
AlwI GGATC 3 cut(s) 39, 83, 130
AoxI GGCC 2 cut(s) 377, 528
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 3 cut(s) 206, 518, 687
AspLEI GCGC 1 cut(s) 598
AspS9I GGNCC 3 cut(s) 347, 359, 490
AvaII GGWCC 3 cut(s) 347, 359, 490
BalI TGGCCA 1 cut(s) 530
BanI GGYRCC 1 cut(s) 595
BanII GRGCYC 1 cut(s) 19
BbrPI CACGTG 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 19
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 143
BcgI CGANNNNNNTGC 2 cut(s) 466, 500
BciVI GTATCC 2 cut(s) 132, 581
BfaI CTAG 2 cut(s) 12, 234
BfmI CTRYAG 1 cut(s) 582
BfoI RGCGCY 1 cut(s) 599
BfuI GTATCC 2 cut(s) 132, 581
BglI GCCNNNNNGGC 1 cut(s) 385
BglII AGATCT 1 cut(s) 510
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme18I GGWCC 3 cut(s) 347, 359, 490
BmgT120I GGNCC 3 cut(s) 347, 359, 490
BmiI GGNNCC 1 cut(s) 597
BmsI GCATC 1 cut(s) 253
BplI GAGNNNNNCTC 2 cut(s) 348, 380
BsaAI YACGTR 1 cut(s) 335
BsaHI GRCGYC 1 cut(s) 596
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 4 cut(s) 33, 46, 150, 380
BseGI GGATG 3 cut(s) 154, 244, 275
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMII CTCAG 1 cut(s) 11
BseNI ACTGG 4 cut(s) 33, 46, 150, 380
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 684
BshFI GGCC 2 cut(s) 379, 530
BshNI GGYRCC 1 cut(s) 595
BsiHKAI GWGCWC 1 cut(s) 19
BslI CCNNNNNNNGG 1 cut(s) 356
BsnI GGCC 2 cut(s) 379, 530
Bsp1286I GDGCHC 1 cut(s) 19
Bsp1407I TGTACA 1 cut(s) 129
Bsp143I GATC 4 cut(s) 31, 88, 122, 510
BspANI GGCC 2 cut(s) 379, 530
BspCNI CTCAG 1 cut(s) 12
BspFNI CGCG 1 cut(s) 684
BspLI GGNNCC 1 cut(s) 597
BspPI GGATC 3 cut(s) 39, 83, 130
BspT107I GGYRCC 1 cut(s) 595
BsrGI TGTACA 1 cut(s) 129
BsrI ACTGG 4 cut(s) 33, 46, 150, 380
BssMI GATC 4 cut(s) 31, 88, 122, 510
BssNI GRCGYC 1 cut(s) 596
Bst4CI ACNGT 1 cut(s) 583
Bst6I CTCTTC 1 cut(s) 540
BstACI GRCGYC 1 cut(s) 596
BstAUI TGTACA 1 cut(s) 129
BstBAI YACGTR 1 cut(s) 335
BstDEI CTNAG 2 cut(s) 20, 507
BstF5I GGATG 3 cut(s) 154, 244, 275
BstFNI CGCG 1 cut(s) 684
BstH2I RGCGCY 1 cut(s) 599
BstHHI GCGC 1 cut(s) 598
BstKTI GATC 4 cut(s) 34, 91, 125, 513
BstMBI GATC 4 cut(s) 31, 88, 122, 510
BstMWI GCNNNNNNNGC 1 cut(s) 385
BstSFI CTRYAG 1 cut(s) 582
BstUI CGCG 1 cut(s) 684
BstV1I GCAGC 1 cut(s) 58
BstX2I RGATCY 3 cut(s) 31, 122, 510
BstYI RGATCY 3 cut(s) 31, 122, 510
BsuI GTATCC 2 cut(s) 132, 581
BsuRI GGCC 2 cut(s) 379, 530
BtsCI GGATG 3 cut(s) 154, 244, 275
BtsIMutI CAGTG 1 cut(s) 443
CfoI GCGC 1 cut(s) 598
Cfr13I GGNCC 3 cut(s) 347, 359, 490
Csp6I GTAC 3 cut(s) 130, 153, 628
CspCI CAANNNNNGTGG 2 cut(s) 351, 386
CviAII CATG 4 cut(s) 226, 313, 431, 592
CviJI RGCY 8 cut(s) 17, 45, 71, 327, 379, 410, 530, 535
CviKI_1 RGCY 8 cut(s) 17, 45, 71, 327, 379, 410, 530, 535
CviQI GTAC 3 cut(s) 130, 153, 628
DdeI CTNAG 2 cut(s) 20, 507
DinI GGCGCC 1 cut(s) 597
DpnI GATC 4 cut(s) 33, 90, 124, 512
DpnII GATC 4 cut(s) 31, 88, 122, 510
EaeI YGGCCR 1 cut(s) 528
Eam1104I CTCTTC 1 cut(s) 540
EarI CTCTTC 1 cut(s) 540
Ecl136II GAGCTC 1 cut(s) 17
Eco24I GRGCYC 1 cut(s) 19
Eco47I GGWCC 3 cut(s) 347, 359, 490
Eco53kI GAGCTC 1 cut(s) 17
Eco57I CTGAAG 1 cut(s) 467
Eco72I CACGTG 1 cut(s) 335
EcoICRI GAGCTC 1 cut(s) 17
EcoT22I ATGCAT 1 cut(s) 401
EcoT38I GRGCYC 1 cut(s) 19
EgeI GGCGCC 1 cut(s) 597
EheI GGCGCC 1 cut(s) 597
FaeI CATG 4 cut(s) 229, 316, 434, 595
FatI CATG 4 cut(s) 225, 312, 430, 591
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 3 cut(s) 161, 231, 282
FriOI GRGCYC 1 cut(s) 19
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 2 cut(s) 12, 234
GlaI GCGC 1 cut(s) 597
GluI GCNGC 1 cut(s) 72
HaeII RGCGCY 1 cut(s) 599
HaeIII GGCC 2 cut(s) 379, 530
HhaI GCGC 1 cut(s) 598
Hin1I GRCGYC 1 cut(s) 596
Hin1II CATG 4 cut(s) 229, 316, 434, 595
Hin6I GCGC 1 cut(s) 596
HinP1I GCGC 1 cut(s) 596
HindIII AAGCTT 1 cut(s) 533
HinfI GANTC 1 cut(s) 437
Hpy166II GTNNAC 5 cut(s) 97, 130, 239, 362, 457
Hpy188I TCNGA 2 cut(s) 21, 517
Hpy188III TCNNGA 2 cut(s) 12, 350
Hpy8I GTNNAC 5 cut(s) 97, 130, 239, 362, 457
HpyAV CCTTC 2 cut(s) 104, 442
HpyCH4III ACNGT 1 cut(s) 583
HpyCH4IV ACGT 3 cut(s) 53, 334, 626
HpyCH4V TGCA 8 cut(s) 37, 164, 182, 276, 332, 399, 430, 608
HpyF10VI GCNNNNNNNGC 1 cut(s) 385
HpyF3I CTNAG 2 cut(s) 20, 507
HpySE526I ACGT 3 cut(s) 53, 334, 626
Hsp92I GRCGYC 1 cut(s) 596
Hsp92II CATG 4 cut(s) 229, 316, 434, 595
HspAI GCGC 1 cut(s) 596
KasI GGCGCC 1 cut(s) 595
Kzo9I GATC 4 cut(s) 31, 88, 122, 510
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 253
MaeI CTAG 2 cut(s) 12, 234
MaeII ACGT 3 cut(s) 53, 334, 626
MaeIII GTNAC 2 cut(s) 291, 650
MalI GATC 4 cut(s) 33, 90, 124, 512
MboI GATC 4 cut(s) 31, 88, 122, 510
MboII GAAGA 2 cut(s) 554, 557
MflI RGATCY 3 cut(s) 31, 122, 510
MhlI GDGCHC 1 cut(s) 19
MlsI TGGCCA 1 cut(s) 530
MluCI AATT 9 cut(s) 6, 102, 159, 173, 199, 206, 368, 518, 687
MluNI TGGCCA 1 cut(s) 530
Mly113I GGCGCC 1 cut(s) 596
MmeI TCCRAC 1 cut(s) 650
MnlI CCTC 5 cut(s) 17, 346, 350, 378, 427
Mox20I TGGCCA 1 cut(s) 530
Mph1103I ATGCAT 1 cut(s) 401
MscI TGGCCA 1 cut(s) 530
MseI TTAA 3 cut(s) 468, 501, 623
MslI CAYNNNNRTG 1 cut(s) 249
Msp20I TGGCCA 1 cut(s) 530
MvnI CGCG 1 cut(s) 684
MwoI GCNNNNNNNGC 1 cut(s) 385
NarI GGCGCC 1 cut(s) 596
NdeII GATC 4 cut(s) 31, 88, 122, 510
NlaIII CATG 4 cut(s) 229, 316, 434, 595
NlaIV GGNNCC 1 cut(s) 597
NmuCI GTSAC 1 cut(s) 650
NsiI ATGCAT 1 cut(s) 401
PfeI GAWTC 1 cut(s) 437
PkrI GCNGC 1 cut(s) 73
PluTI GGCGCC 1 cut(s) 599
PmaCI CACGTG 1 cut(s) 335
PmlI CACGTG 1 cut(s) 335
Ppu21I YACGTR 1 cut(s) 335
PsiI TTATAA 1 cut(s) 81
Psp124BI GAGCTC 1 cut(s) 19
PspCI CACGTG 1 cut(s) 335
PspN4I GGNNCC 1 cut(s) 597
PspPI GGNCC 3 cut(s) 347, 359, 490
PsuI RGATCY 3 cut(s) 31, 122, 510
RsaI GTAC 3 cut(s) 131, 154, 629
RsaNI GTAC 3 cut(s) 130, 153, 628
RseI CAYNNNNRTG 1 cut(s) 249
SacI GAGCTC 1 cut(s) 19
SaqAI TTAA 3 cut(s) 468, 501, 623
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 4 cut(s) 31, 88, 122, 510
Sau96I GGNCC 3 cut(s) 347, 359, 490
SduI GDGCHC 1 cut(s) 19
SfaNI GCATC 1 cut(s) 253
SfcI CTRYAG 1 cut(s) 582
SfoI GGCGCC 1 cut(s) 597
SinI GGWCC 3 cut(s) 347, 359, 490
SmiMI CAYNNNNRTG 1 cut(s) 249
Sse9I AATT 9 cut(s) 6, 102, 159, 173, 199, 206, 368, 518, 687
SspDI GGCGCC 1 cut(s) 595
SspMI CTAG 2 cut(s) 12, 234
SstI GAGCTC 1 cut(s) 19
TaaI ACNGT 1 cut(s) 583
TaiI ACGT 3 cut(s) 56, 337, 629
TasI AATT 9 cut(s) 6, 102, 159, 173, 199, 206, 368, 518, 687
TatI WGTACW 1 cut(s) 129
TfiI GAWTC 1 cut(s) 437
Tru1I TTAA 3 cut(s) 468, 501, 623
Tru9I TTAA 3 cut(s) 468, 501, 623
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 1 cut(s) 650
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 1 cut(s) 650
TspDTI ATGAA 1 cut(s) 321
TspRI CASTG 1 cut(s) 450
VpaK11BI GGWCC 3 cut(s) 347, 359, 490
XapI RAATTY 3 cut(s) 206, 518, 687
XbaI TCTAGA 1 cut(s) 11
XspI CTAG 2 cut(s) 12, 234
Zsp2I ATGCAT 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.