Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

8602477 .. 8602996

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG094200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGAAATATCGACCCAATGAGAACATTCAGTGTCTTATGGATTGGGCCCTTGTTTTGCAACAAAAAGGGAACTTACTGGGGCTGGTGGATCCGAGGTTGGAGTCCGATTTCAGTAAGAAAGAGGCGATTAGAATGATCAAAGTAGCTCTACTGTGCGCCAATCCAACAGCTGGACTTAGGCCTATCATGTCTGAAGTAGTGAATATGCTTGAAGGGCGGACCGCCGTGGATGAAGTGGTTCTGGATCCAAGTATCCACGGTGATGAAATGACGCGGTTAAAAGCCTTCGAAGAGCAGTTTGATCACAGCACTGCAAAATGGAGCTCCTCAAGTGGAAGCCATGGCCTCATTCGTTCATCAGACGCACCATGGACCGGTTCTACTATTACTACTGAGTCTTCAGATCTCTATAAAGTTTATTCAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

142

Amino Acids

15.79

Weight (kDa)

5.34

Isoelectric Point (pI)

35.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	170
AccII	CGCG	1 cut(s)	274
AciI	CCGC	3 cut(s)	217, 222, 274
AclWI	GGATC	4 cut(s)	83, 96, 239, 252
AcuI	CTGAAG	2 cut(s)	213, 384
AfiI	CCNNNNNNNGG	2 cut(s)	170, 374
AgeI	ACCGGT	1 cut(s)	374
AgsI	TTSAA	2 cut(s)	212, 423
AluBI	AGCT	3 cut(s)	146, 170, 324
AluI	AGCT	3 cut(s)	146, 170, 324
Alw21I	GWGCWC	1 cut(s)	326
AlwI	GGATC	4 cut(s)	83, 96, 239, 252
AoxI	GGCC	3 cut(s)	45, 179, 343
ApaI	GGGCCC	1 cut(s)	49
AsiGI	ACCGGT	1 cut(s)	374
Asp700I	GAANNNNTTC	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	4 cut(s)	45, 46, 219, 372
AsuHPI	GGTGA	1 cut(s)	272
AsuII	TTCGAA	1 cut(s)	288
AvaII	GGWCC	2 cut(s)	219, 372
BaeGI	GKGCMC	1 cut(s)	49
BamHI	GGATCC	2 cut(s)	88, 244
BanII	GRGCYC	2 cut(s)	49, 326
BbsI	GAAGAC	1 cut(s)	390
Bbv12I	GWGCWC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	263
BclI	TGATCA	2 cut(s)	135, 301
BfuI	GTATCC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	403
Bme18I	GGWCC	2 cut(s)	219, 372
BmgT120I	GGNCC	4 cut(s)	45, 46, 219, 372
BmiI	GGNNCC	3 cut(s)	47, 90, 246
BmrI	ACTGGG	1 cut(s)	86
BmuI	ACTGGG	1 cut(s)	86
BpiI	GAAGAC	1 cut(s)	390
Bpu14I	TTCGAA	1 cut(s)	288
BpuEI	CTTGAG	1 cut(s)	313
BsaJI	CCNNGG	5 cut(s)	92, 225, 256, 340, 368
BsaWI	WCCGGW	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	2 cut(s)	170, 374
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	81
BseDI	CCNNGG	5 cut(s)	92, 225, 256, 340, 368
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	170, 374
BseMII	CTCAG	1 cut(s)	384
BseNI	ACTGG	1 cut(s)	81
BseRI	GAGGAG	1 cut(s)	316
BseSI	GKGCMC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	274
BshFI	GGCC	3 cut(s)	47, 181, 345
BshTI	ACCGGT	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	326
BsiSI	CCGG	1 cut(s)	375
BslI	CCNNNNNNNGG	2 cut(s)	170, 374
BsnI	GGCC	3 cut(s)	47, 181, 345
Bsp119I	TTCGAA	1 cut(s)	288
Bsp120I	GGGCCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	49, 326
Bsp143I	GATC	5 cut(s)	88, 135, 244, 301, 403
Bsp19I	CCATGG	2 cut(s)	340, 368
BspACI	CCGC	3 cut(s)	217, 222, 274
BspANI	GGCC	3 cut(s)	47, 181, 345
BspCNI	CTCAG	1 cut(s)	385
BspFNI	CGCG	1 cut(s)	274
BspLI	GGNNCC	3 cut(s)	47, 90, 246
BspPI	GGATC	4 cut(s)	83, 96, 239, 252
BspQI	GCTCTTC	1 cut(s)	285
BspT104I	TTCGAA	1 cut(s)	288
BsrFI	RCCGGY	1 cut(s)	374
BsrI	ACTGG	1 cut(s)	81
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	5 cut(s)	92, 225, 256, 340, 368
BssMI	GATC	5 cut(s)	88, 135, 244, 301, 403
BssT1I	CCWWGG	2 cut(s)	340, 368
Bst4CI	ACNGT	2 cut(s)	153, 260
Bst6I	CTCTTC	1 cut(s)	285
BstBI	TTCGAA	1 cut(s)	288
BstDEI	CTNAG	2 cut(s)	176, 393
BstDSI	CCRYGG	4 cut(s)	225, 256, 340, 368
BstF5I	GGATG	1 cut(s)	235
BstFNI	CGCG	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	158
BstKTI	GATC	5 cut(s)	91, 138, 247, 304, 406
BstMBI	GATC	5 cut(s)	88, 135, 244, 301, 403
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstSLI	GKGCMC	1 cut(s)	49
BstUI	CGCG	1 cut(s)	274
BstV2I	GAAGAC	1 cut(s)	390
BstX2I	RGATCY	3 cut(s)	88, 244, 403
BstYI	RGATCY	3 cut(s)	88, 244, 403
BsuI	GTATCC	1 cut(s)	263
BsuRI	GGCC	3 cut(s)	47, 181, 345
BtgI	CCRYGG	4 cut(s)	225, 256, 340, 368
BtsCI	GGATG	1 cut(s)	235
BtsI	GCAGTG	1 cut(s)	309
BtsIMutI	CAGTG	2 cut(s)	35, 309
CfoI	GCGC	1 cut(s)	158
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	4 cut(s)	45, 46, 219, 372
CpoI	CGGWCCG	1 cut(s)	219
CseI	GACGC	2 cut(s)	280, 371
CspAI	ACCGGT	1 cut(s)	374
CspI	CGGWCCG	1 cut(s)	219
CviAII	CATG	3 cut(s)	187, 341, 369
CviJI	RGCY	9 cut(s)	47, 82, 146, 170, 181, 284, 324, 339, 345
CviKI_1	RGCY	9 cut(s)	47, 82, 146, 170, 181, 284, 324, 339, 345
DdeI	CTNAG	2 cut(s)	176, 393
DpnI	GATC	5 cut(s)	90, 137, 246, 303, 405
DpnII	GATC	5 cut(s)	88, 135, 244, 301, 403
Eam1104I	CTCTTC	1 cut(s)	285
EarI	CTCTTC	1 cut(s)	285
EciI	GGCGGA	1 cut(s)	232
Ecl136II	GAGCTC	1 cut(s)	324
Eco130I	CCWWGG	2 cut(s)	340, 368
Eco147I	AGGCCT	1 cut(s)	181
Eco24I	GRGCYC	2 cut(s)	49, 326
Eco47I	GGWCC	2 cut(s)	219, 372
Eco53kI	GAGCTC	1 cut(s)	324
Eco57I	CTGAAG	2 cut(s)	213, 384
EcoICRI	GAGCTC	1 cut(s)	324
EcoO109I	RGGNCCY	1 cut(s)	46
EcoT14I	CCWWGG	2 cut(s)	340, 368
EcoT38I	GRGCYC	2 cut(s)	49, 326
ErhI	CCWWGG	2 cut(s)	340, 368
FaeI	CATG	3 cut(s)	190, 344, 372
FaiI	YATR	6 cut(s)	38, 188, 206, 342, 370, 411
FatI	CATG	3 cut(s)	186, 340, 368
FbaI	TGATCA	2 cut(s)	135, 301
FokI	GGATG	1 cut(s)	242
FriOI	GRGCYC	2 cut(s)	49, 326
GlaI	GCGC	1 cut(s)	157
HaeIII	GGCC	3 cut(s)	47, 181, 345
HapII	CCGG	1 cut(s)	375
HgaI	GACGC	2 cut(s)	280, 371
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	190, 344, 372
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	2 cut(s)	101, 395
HpaII	CCGG	1 cut(s)	375
HphI	GGTGA	1 cut(s)	272
Hpy188I	TCNGA	5 cut(s)	93, 106, 193, 361, 403
Hpy188III	TCNNGA	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	206, 295
HpyCH4III	ACNGT	2 cut(s)	153, 260
HpyCH4V	TGCA	2 cut(s)	58, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	2 cut(s)	176, 393
Hsp92II	CATG	3 cut(s)	190, 344, 372
HspAI	GCGC	1 cut(s)	156
Ksp22I	TGATCA	2 cut(s)	135, 301
Kzo9I	GATC	5 cut(s)	88, 135, 244, 301, 403
LguI	GCTCTTC	1 cut(s)	285
LmnI	GCTCC	2 cut(s)	321, 329
LpnPI	CCDG	5 cut(s)	62, 68, 156, 227, 388
MalI	GATC	5 cut(s)	90, 137, 246, 303, 405
MboI	GATC	5 cut(s)	88, 135, 244, 301, 403
MboII	GAAGA	2 cut(s)	302, 390
MflI	RGATCY	3 cut(s)	88, 244, 403
MhlI	GDGCHC	2 cut(s)	49, 326
MlyI	GAGTC	2 cut(s)	110, 404
MmeI	TCCRAC	2 cut(s)	78, 188
MnlI	CCTC	4 cut(s)	87, 115, 337, 356
MroXI	GAANNNNTTC	1 cut(s)	237
MseI	TTAA	2 cut(s)	278, 427
MslI	CAYNNNNRTG	1 cut(s)	261
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	1 cut(s)	375
MvnI	CGCG	1 cut(s)	274
MwoI	GCNNNNNNNGC	1 cut(s)	214
NcoI	CCATGG	2 cut(s)	340, 368
NdeII	GATC	5 cut(s)	88, 135, 244, 301, 403
NlaIII	CATG	3 cut(s)	190, 344, 372
NlaIV	GGNNCC	3 cut(s)	47, 90, 246
NspV	TTCGAA	1 cut(s)	288
PceI	AGGCCT	1 cut(s)	181
PciSI	GCTCTTC	1 cut(s)	285
PdmI	GAANNNNTTC	1 cut(s)	237
PflMI	CCANNNNNTGG	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	374
PleI	GAGTC	2 cut(s)	109, 403
PpsI	GAGTC	2 cut(s)	109, 403
Psp124BI	GAGCTC	1 cut(s)	326
PspN4I	GGNNCC	3 cut(s)	47, 90, 246
PspOMI	GGGCCC	1 cut(s)	45
PspPI	GGNCC	4 cut(s)	45, 46, 219, 372
PsuI	RGATCY	3 cut(s)	88, 244, 403
PvuII	CAGCTG	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	261
Rsr2I	CGGWCCG	1 cut(s)	219
RsrII	CGGWCCG	1 cut(s)	219
SacI	GAGCTC	1 cut(s)	326
SapI	GCTCTTC	1 cut(s)	285
SaqAI	TTAA	2 cut(s)	278, 427
Sau3AI	GATC	5 cut(s)	88, 135, 244, 301, 403
Sau96I	GGNCC	4 cut(s)	45, 46, 219, 372
SchI	GAGTC	2 cut(s)	110, 404
SduI	GDGCHC	2 cut(s)	49, 326
SetI	ASST	4 cut(s)	98, 148, 172, 326
SfuI	TTCGAA	1 cut(s)	288
SinI	GGWCC	2 cut(s)	219, 372
SmiMI	CAYNNNNRTG	1 cut(s)	261
SmlI	CTYRAG	1 cut(s)	328
SmoI	CTYRAG	1 cut(s)	328
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	3 cut(s)	217, 222, 274
SstI	GAGCTC	1 cut(s)	326
StuI	AGGCCT	1 cut(s)	181
StyI	CCWWGG	2 cut(s)	340, 368
TaaI	ACNGT	2 cut(s)	153, 260
TaqI	TCGA	2 cut(s)	10, 288
Tru1I	TTAA	2 cut(s)	278, 427
Tru9I	TTAA	2 cut(s)	278, 427
TscAI	CASTG	2 cut(s)	35, 316
TspDTI	ATGAA	4 cut(s)	17, 246, 279, 345
TspRI	CASTG	2 cut(s)	35, 316
Van91I	CCANNNNNTGG	1 cut(s)	170
VpaK11BI	GGWCC	2 cut(s)	219, 372
XmnI	GAANNNNTTC	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.