Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

8462632 .. 8469052

Gene Structure 6421 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG093500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGCATGATAAGAAGAAGATGAAGCATAACATCATTATGCTCATGATCTTGGTTCTCTGCTTGATCTGCATAACATCACTCGAAGTTGATGCAAAATGTTCGCCTCTTCCGCCTACTGAAGCTCTGAGAGGACTCGACCTGCAAACTGGCTTTTTCACCTTCAAGCAAATCAAAGCTGCCACTAACAACTTTGATCCAACAAACAAAATTGGAGAAGGTGGTTTTGGGCCTGTCTACAAGGCCCTTGTTTTGCAACAAAAAGGGAGCTTACTGGAGCTGGTGGATCCGAGGTTGGGGTCCGATTTCAGTAAGAAAGAGGCGATTAGAACAATCAAAGTAGCTCTATTATGCGCCAATCCAACAGCTGCACTTAGGCCTATCATGTCTGAAGTAGTGAGTATGCTTGAAGGGCGGACCCCAGTGGATGCAGTGGTTCTGGATCCAAGCATCCATGGTGATGAAATGACGAGGTTAAGAGCCTTTGAAGACCAGTTTGATCACATTACTGCACAAGGGAGCTCCCCAAGTGGAAGTCATAGCCTCATGCGTTCATTAAATGGACCATGGACCGGTTCTTCAGTTACTACTACGTCTTCAGATCTCTATAAATGTAGTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 Malectin Pkinase_Tyr

Protein Analysis

206

Amino Acids

22.43

Weight (kDa)

7.66

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	234
AciI	CCGC	2 cut(s)	110, 412
AclWI	GGATC	5 cut(s)	188, 278, 291, 434, 447
AcuI	CTGAAG	4 cut(s)	138, 408, 561, 579
AfiI	CCNNNNNNNGG	2 cut(s)	293, 569
AgeI	ACCGGT	1 cut(s)	569
AgsI	TTSAA	3 cut(s)	163, 407, 485
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	7 cut(s)	122, 176, 267, 277, 341, 365, 519
AluI	AGCT	7 cut(s)	122, 176, 267, 277, 341, 365, 519
Alw21I	GWGCWC	1 cut(s)	521
AlwI	GGATC	5 cut(s)	188, 278, 291, 434, 447
AoxI	GGCC	3 cut(s)	227, 240, 374
ApeKI	GCWGC	2 cut(s)	176, 365
AsiGI	ACCGGT	1 cut(s)	569
AspLEI	GCGC	1 cut(s)	353
AspS9I	GGNCC	6 cut(s)	227, 241, 297, 414, 560, 567
AsuHPI	GGTGA	2 cut(s)	148, 467
AvaII	GGWCC	4 cut(s)	297, 414, 560, 567
BamHI	GGATCC	2 cut(s)	283, 439
BanII	GRGCYC	1 cut(s)	521
BbsI	GAAGAC	2 cut(s)	492, 585
Bbv12I	GWGCWC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	163, 352
BcgI	CGANNNNNNTGC	4 cut(s)	71, 81, 105, 115
BclI	TGATCA	1 cut(s)	496
BfuAI	ACCTGC	1 cut(s)	147
BglII	AGATCT	1 cut(s)	598
BisI	GCNGC	2 cut(s)	177, 366
BlsI	GCNGC	2 cut(s)	178, 367
Bme18I	GGWCC	4 cut(s)	297, 414, 560, 567
BmgT120I	GGNCC	6 cut(s)	227, 241, 297, 414, 560, 567
BmiI	GGNNCC	4 cut(s)	285, 298, 416, 441
BmrI	ACTGGG	1 cut(s)	413
BmsI	GCATC	3 cut(s)	79, 415, 456
BmuI	ACTGGG	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	492, 585
BpmI	CTGGAG	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	287, 451, 563
BsaWI	WCCGGW	1 cut(s)	569
Bsc4I	CCNNNNNNNGG	2 cut(s)	293, 569
Bse118I	RCCGGY	1 cut(s)	569
Bse1I	ACTGG	4 cut(s)	151, 276, 419, 490
BseDI	CCNNGG	3 cut(s)	287, 451, 563
BseGI	GGATG	2 cut(s)	430, 447
BseLI	CCNNNNNNNGG	2 cut(s)	293, 569
BseMII	CTCAG	1 cut(s)	116
BseNI	ACTGG	4 cut(s)	151, 276, 419, 490
BseXI	GCAGC	2 cut(s)	163, 352
BsgI	GTGCAG	2 cut(s)	351, 492
BshFI	GGCC	3 cut(s)	229, 242, 376
BshTI	ACCGGT	1 cut(s)	569
BsiHKAI	GWGCWC	1 cut(s)	521
BsiSI	CCGG	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	293, 569
BsnI	GGCC	3 cut(s)	229, 242, 376
Bsp1286I	GDGCHC	1 cut(s)	521
Bsp143I	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
Bsp19I	CCATGG	2 cut(s)	451, 563
BspACI	CCGC	2 cut(s)	110, 412
BspANI	GGCC	3 cut(s)	229, 242, 376
BspCNI	CTCAG	1 cut(s)	117
BspHI	TCATGA	1 cut(s)	42
BspLI	GGNNCC	4 cut(s)	285, 298, 416, 441
BspMI	ACCTGC	1 cut(s)	147
BspPI	GGATC	5 cut(s)	188, 278, 291, 434, 447
BsrFI	RCCGGY	1 cut(s)	569
BsrI	ACTGG	4 cut(s)	151, 276, 419, 490
BssAI	RCCGGY	1 cut(s)	569
BssECI	CCNNGG	3 cut(s)	287, 451, 563
BssMI	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
BssT1I	CCWWGG	2 cut(s)	451, 563
Bst6I	CTCTTC	1 cut(s)	111
BstDEI	CTNAG	2 cut(s)	125, 371
BstDSI	CCRYGG	2 cut(s)	451, 563
BstF5I	GGATG	2 cut(s)	430, 447
BstHHI	GCGC	1 cut(s)	353
BstKTI	GATC	7 cut(s)	48, 66, 196, 286, 442, 499, 601
BstMBI	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
BstMWI	GCNNNNNNNGC	3 cut(s)	66, 109, 409
BstV1I	GCAGC	2 cut(s)	163, 352
BstV2I	GAAGAC	2 cut(s)	492, 585
BstX2I	RGATCY	3 cut(s)	283, 439, 598
BstYI	RGATCY	3 cut(s)	283, 439, 598
BsuRI	GGCC	3 cut(s)	229, 242, 376
BtgI	CCRYGG	2 cut(s)	451, 563
BtsCI	GGATG	2 cut(s)	430, 447
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	426, 435
BveI	ACCTGC	1 cut(s)	147
CciI	TCATGA	1 cut(s)	42
CfoI	GCGC	1 cut(s)	353
Cfr10I	RCCGGY	1 cut(s)	569
Cfr13I	GGNCC	6 cut(s)	227, 241, 297, 414, 560, 567
CspAI	ACCGGT	1 cut(s)	569
CviAII	CATG	6 cut(s)	5, 43, 382, 452, 544, 564
DdeI	CTNAG	2 cut(s)	125, 371
DpnI	GATC	7 cut(s)	47, 65, 195, 285, 441, 498, 600
DpnII	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EciI	GGCGGA	2 cut(s)	99, 427
Ecl136II	GAGCTC	1 cut(s)	519
Eco130I	CCWWGG	2 cut(s)	451, 563
Eco147I	AGGCCT	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	521
Eco47I	GGWCC	4 cut(s)	297, 414, 560, 567
Eco53kI	GAGCTC	1 cut(s)	519
Eco57I	CTGAAG	4 cut(s)	138, 408, 561, 579
EcoICRI	GAGCTC	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	241
EcoT14I	CCWWGG	2 cut(s)	451, 563
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	521
ErhI	CCWWGG	2 cut(s)	451, 563
FaeI	CATG	6 cut(s)	8, 46, 385, 455, 547, 567
FatI	CATG	6 cut(s)	4, 42, 381, 451, 543, 563
FbaI	TGATCA	1 cut(s)	496
FblI	GTMKAC	1 cut(s)	234
Fnu4HI	GCNGC	2 cut(s)	177, 366
FokI	GGATG	2 cut(s)	434, 437
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	177, 366
GlaI	GCGC	1 cut(s)	352
GluI	GCNGC	2 cut(s)	177, 366
GsuI	CTGGAG	1 cut(s)	293
HaeIII	GGCC	3 cut(s)	229, 242, 376
HapII	CCGG	1 cut(s)	570
HhaI	GCGC	1 cut(s)	353
Hin1II	CATG	6 cut(s)	8, 46, 385, 455, 547, 567
Hin6I	GCGC	1 cut(s)	351
HinP1I	GCGC	1 cut(s)	351
HinfI	GANTC	1 cut(s)	132
HpaII	CCGG	1 cut(s)	570
HphI	GGTGA	2 cut(s)	148, 467
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	5 cut(s)	126, 288, 301, 388, 598
Hpy188III	TCNNGA	2 cut(s)	43, 437
Hpy8I	GTNNAC	1 cut(s)	235
HpyAV	CCTTC	3 cut(s)	169, 209, 401
HpyCH4IV	ACGT	1 cut(s)	590
HpyCH4V	TGCA	8 cut(s)	4, 69, 92, 142, 253, 368, 428, 509
HpyF10VI	GCNNNNNNNGC	3 cut(s)	66, 109, 409
HpyF3I	CTNAG	2 cut(s)	125, 371
HpySE526I	ACGT	1 cut(s)	590
Hsp92II	CATG	6 cut(s)	8, 46, 385, 455, 547, 567
HspAI	GCGC	1 cut(s)	351
Ksp22I	TGATCA	1 cut(s)	496
Kzo9I	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
LmnI	GCTCC	4 cut(s)	264, 274, 516, 524
LpnPI	CCDG	9 cut(s)	132, 152, 243, 257, 263, 422, 432, 503, 583
Lsp1109I	GCAGC	2 cut(s)	163, 352
LweI	GCATC	3 cut(s)	79, 415, 456
MaeII	ACGT	1 cut(s)	590
MaeIII	GTNAC	1 cut(s)	580
MalI	GATC	7 cut(s)	47, 65, 195, 285, 441, 498, 600
MboI	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
MboII	GAAGA	6 cut(s)	25, 28, 98, 497, 567, 585
MflI	RGATCY	3 cut(s)	283, 439, 598
MhlI	GDGCHC	1 cut(s)	521
MluCI	AATT	1 cut(s)	207
MlyI	GAGTC	1 cut(s)	126
MmeI	TCCRAC	2 cut(s)	221, 383
MnlI	CCTC	6 cut(s)	114, 122, 282, 310, 462, 551
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	473, 554
MslI	CAYNNNNRTG	2 cut(s)	35, 456
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	1 cut(s)	570
MwoI	GCNNNNNNNGC	3 cut(s)	66, 109, 409
NcoI	CCATGG	2 cut(s)	451, 563
NdeII	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
NlaIII	CATG	6 cut(s)	8, 46, 385, 455, 547, 567
NlaIV	GGNNCC	4 cut(s)	285, 298, 416, 441
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	42
PceI	AGGCCT	1 cut(s)	376
PinAI	ACCGGT	1 cut(s)	569
PkrI	GCNGC	2 cut(s)	178, 367
PleI	GAGTC	1 cut(s)	126
PpsI	GAGTC	1 cut(s)	126
Psp124BI	GAGCTC	1 cut(s)	521
PspN4I	GGNNCC	4 cut(s)	285, 298, 416, 441
PspPI	GGNCC	6 cut(s)	227, 241, 297, 414, 560, 567
PsuI	RGATCY	3 cut(s)	283, 439, 598
PvuII	CAGCTG	1 cut(s)	365
RseI	CAYNNNNRTG	2 cut(s)	35, 456
SacI	GAGCTC	1 cut(s)	521
SaqAI	TTAA	2 cut(s)	473, 554
SatI	GCNGC	2 cut(s)	177, 366
Sau3AI	GATC	7 cut(s)	45, 63, 193, 283, 439, 496, 598
Sau96I	GGNCC	6 cut(s)	227, 241, 297, 414, 560, 567
SchI	GAGTC	1 cut(s)	126
SduI	GDGCHC	1 cut(s)	521
SfaNI	GCATC	3 cut(s)	79, 415, 456
SinI	GGWCC	4 cut(s)	297, 414, 560, 567
SmiMI	CAYNNNNRTG	2 cut(s)	35, 456
Sse9I	AATT	1 cut(s)	207
SseBI	AGGCCT	1 cut(s)	376
SsiI	CCGC	2 cut(s)	110, 412
SstI	GAGCTC	1 cut(s)	521
StuI	AGGCCT	1 cut(s)	376
StyI	CCWWGG	2 cut(s)	451, 563
TaiI	ACGT	1 cut(s)	593
TaqI	TCGA	2 cut(s)	81, 135
TasI	AATT	1 cut(s)	207
Tru1I	TTAA	2 cut(s)	473, 554
Tru9I	TTAA	2 cut(s)	473, 554
TscAI	CASTG	2 cut(s)	426, 435
TseI	GCWGC	2 cut(s)	176, 365
TspDTI	ATGAA	3 cut(s)	35, 474, 540
TspRI	CASTG	2 cut(s)	426, 435
VpaK11BI	GGWCC	4 cut(s)	297, 414, 560, 567
XmiI	GTMKAC	1 cut(s)	234
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.