Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Forward (+)

8219977 .. 8228812

Gene Structure 8836 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ29286

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2673 bp

ATGGCACAAGTTCTCAACAGTCAAAAACCCATCTTCTTTTGCTATGTTGCTTTGCTTGTTGTGCTTATTTGCATTGTACCCATCAAATCTCAAGCACAATCTGGGACTCTTGCACCTGATGAAGCGGAAGCCCTTCGTGAAATAGCTGAACAACTGAATAAGAAGGACTGGAATTTCAGTGACCCATGTAGCAATGTTCCTACGTTTTCAAGTCCACATACTGATCAGTATAACAATACTTTGGTCTGCAATTGCTCCATCTCCAGCAATGTATGCCACATTGAAAGCATTTATCTTACTGGTCAGGACCTAGATGGTGTTCTTCCAGCATCGCTGGCTAAGCTACCTTATCTTAAGCAAGTTAATCTGGGTCAGAATGATCTTAGTGGTTCGATTCCACGTGAATGGGCTTCTACCAAGTTGGAATTTCTGGTTCTCAGTGTGAACAACTTATCAGGACCTATCCCTGGCTATTTGGGAAACATAACTACTCTCAGAGCTCTGGCCTTGGAAAGCAACTTATTTTCTGGACCTGTTCCTTCGGACCTGGGAAGATTGATTAACATGGAGATTCTCTATCTTCGCGCTAACAACCTCACTGGAGAGTTGCCTGTGGCTCTCACTAATCTGACCAAATTAAAAGTACTTCAGATAGGTAGTAACAACTTCACTGGAAGAATACCCAACTACTTTCAAAGTTGGAAAGACCTCCAAAGCTTAGAGATGCAAGCGAGTGGTCTTGAAGGGCCCCTTCCATCTAGTCTCTCTGCCTTAAACAATATGACAGACCTGAGGATTGGTGACTTAAGTGGTGAGAGTTCAGAATTTCCAAATTTATCAAACATGACAAACATGCAGAAACTGATGTTAAGGAGCTGCAATATAACAGGAGAAATCCCTGAATATATATCTACCATGACAAATCTGGCTGTTTTAGATCTAAGCTTCAACAGATTGGAAGGGGCCATTCCAAATTTTGGTAATATAATGCAATTGTCAACAATATATTTGACAGGTAACTTACTTACGGGGCTTCCAGACTGGATCAAAAGTAGAGACAGTCGCTACAATATAGATATCTCCTACAATTACTTCTCTCAGAGCTCTGTCCCAACTACTTGTCGAGGGACTTTCAACTGGTTCAGAAGTATTTCCCAACAGAACAACTCAATACTAAGCAATTGCCTCAACTCATGTTCAAAAGATCAGTACTCATTGCATATAAATTGTGGTGGAAAACAAACCACCATCGGAAGCATCAAGTATGAAGGAGATGAAGCCTCAGGAGGTGCAGCAACATTTGTTCAGTCCACAACCCCCAATTGGGGGTTTAGTAGCACCGGTGATTTCGTAGATGCTTGGAGTTCTGACAACGACTATATTGCCAATAATGTTTCCATACTCAAAATGAACAACTCCGAATTGTACACAACTGCACGACTTTCTCCTCTTTCTCTCACCTACTATGCCCATTGCTTAGCAAATGGAAATTACACTGTGAAACTACACTTCGCAGAGATAGTTCTCAGAGACAACAGGTCTTATTACGGTGTTGGAAGACGGATGTTTGATGTTTATATCCAGGACAAATTGGTACTGAAGGATTTTGACATTAGAAAGGAAGCACTAGGGGTTGATAAGGAAGTGATCAAGGTATTTAAAGCAGTTGTTAATGTTAAGACTCTACTAATCCGCTTTCAGTGGGCTGGGAGAGGGACAACTAATGTTCCTCAAAGAGGAAAATATGGTTCTCTTATATCAGCCATCTCAGTGCAGTCTGATTTCAAGCCACCTGATGATAGCAAAACAAAGATTTACATTGTGATTGGAGTTGTTTCAGCTTTATGCCTTATCTTCTTGATATTTGGCATTCTTTGGTTAAGAGGCTGTTTCGGACATAAGACAACCAGAGAAGAAGAACTGAGAGGATTGGATCTGCAAACTGGTTTCTTTAGATTCAAACAAATTAAAGCTGCCACTAACAACTTTGATGCTGCAAACAAGCTTGGGGAAGGTGGCTTTGGAGCTGTTTACAAGGGCGAATTATTGGATGGTAGTTTTATTGCCGTTAAGCAACTTTCTTCAAAATCAAAGCAGGGAAATCGTGAATTTGTGAATGAAATAGGCATGATGTCTGCATTACAACACCCAAATCTTGTTAAACTGTATGGATGTTGCACGGAAGGAAATCAGTTATTGTTGGTCTACGAGTACATGGAGAACAATAGCCTTTCACATACTTTATTTGGTTCGGAGGAAGGCCTACGGAAATTGGACTGGCCTACGAGGCAGAAAATATGTGTTGGAATTGCAAAGGGTCTTGCTTTCCTGCACGATGGAACCTTGAAAATCGTTCATAGAGATATCAAAACAACCAACATATTGCTGGATAGGGACCTTAATGCTAAGATAGCTGACTTCGGCTTGGCTAAGCTTGACGAGGAGGAGCATACCCATATTAGCACCAGAGTTGCTGGAACTATAGGATACATGGCACCAGAATATGCTTTATGGGGCTATCTAACCGATAAGGCAGATGTTTACAGTTTTGGGGTTGTTGCATTGGAGCTTGTATCAGGGAAAAACAACATCAAATATCGGCCAAACGAAAATTTTGTATGCCTTCTAGATTGGCTGGTCTTGCCCTTGTTTTGCAACAAAAAGGAAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

890

Amino Acids

98.79

Weight (kDa)

6.5

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	157 - 266	6.1e-09	Leucine-rich repeat region
Malectin	PF11721	405 - 589	3.4e-38	Malectin domain
Pkinase	PF00069	665 - 865	2.3e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	666 - 871	2.8e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	2494
AccB7I	CCANNNNNTGG	1 cut(s)	977
AccI	GTMKAC	1 cut(s)	2205
AccII	CGCG	1 cut(s)	585
AciI	CCGC	2 cut(s)	125, 1693
AclWI	GGATC	2 cut(s)	1052, 1941
AcoI	YGGCCR	1 cut(s)	2600
AcsI	RAATTY	7 cut(s)	172, 425, 824, 832, 973, 2108, 2611
AcuI	CTGAAG	2 cut(s)	632, 1619
AcvI	CACGTG	1 cut(s)	401
AfaI	GTAC	6 cut(s)	78, 645, 1211, 1427, 1596, 2213
AfiI	CCNNNNNNNGG	7 cut(s)	467, 977, 1323, 1324, 1325, 1326, 1736
AflII	CTTAAG	2 cut(s)	353, 805
AgeI	ACCGGT	1 cut(s)	1340
AhdI	GACNNNNNGTC	1 cut(s)	1537
AjnI	CCWGG	3 cut(s)	466, 546, 1581
AjuI	GAANNNNNNNTTGG	2 cut(s)	2004, 2036
Alw21I	GWGCWC	2 cut(s)	502, 1106
Alw26I	GTCTC	3 cut(s)	767, 1050, 1524
AlwI	GGATC	2 cut(s)	1052, 1941
AlwNI	CAGNNNCTG	1 cut(s)	862
AoxI	GGCC	6 cut(s)	504, 746, 963, 2260, 2279, 2600
ApaI	GGGCCC	1 cut(s)	750
ApeKI	GCWGC	4 cut(s)	876, 1292, 1973, 1994
ApoI	RAATTY	7 cut(s)	172, 425, 824, 832, 973, 2108, 2611
AsiGI	ACCGGT	1 cut(s)	1340
Asp700I	GAANNNNTTC	2 cut(s)	132, 1150
AspLEI	GCGC	1 cut(s)	587
AspS9I	GGNCC	8 cut(s)	307, 458, 530, 544, 746, 747, 963, 2395
AsuHPI	GGTGA	4 cut(s)	812, 824, 1355, 1450
AvaII	GGWCC	5 cut(s)	307, 458, 530, 544, 2395
AxyI	CCTNAGG	2 cut(s)	791, 1282
BaeGI	GKGCMC	1 cut(s)	750
BanI	GGYRCC	1 cut(s)	2494
BanII	GRGCYC	3 cut(s)	502, 750, 1106
BbrPI	CACGTG	1 cut(s)	401
BbsI	GAAGAC	1 cut(s)	1564
Bbv12I	GWGCWC	2 cut(s)	502, 1106
BbvI	GCAGC	4 cut(s)	863, 1304, 1960, 1981
BccI	CCATC	9 cut(s)	38, 89, 266, 308, 763, 1256, 1772, 2045, 2330
BceAI	ACGGC	1 cut(s)	2051
BcgI	CGANNNNNNTGC	4 cut(s)	1364, 1398, 2084, 2118
BciT130I	CCWGG	3 cut(s)	468, 548, 1583
BciVI	GTATCC	1 cut(s)	2480
BclI	TGATCA	2 cut(s)	223, 1647
BcoDI	GTCTC	3 cut(s)	767, 1050, 1524
BfaI	CTAG	4 cut(s)	311, 759, 1628, 2627
BfmI	CTRYAG	1 cut(s)	2481
BfrI	CTTAAG	2 cut(s)	353, 805
BfuI	GTATCC	1 cut(s)	2480
BglI	GCCNNNNNGGC	1 cut(s)	2287
BglII	AGATCT	1 cut(s)	937
BisI	GCNGC	4 cut(s)	877, 1293, 1974, 1995
BlpI	GCTNAGC	3 cut(s)	339, 1477, 2430
BlsI	GCNGC	4 cut(s)	878, 1294, 1975, 1996
BmcAI	AGTACT	2 cut(s)	645, 1211
Bme1390I	CCNGG	3 cut(s)	468, 548, 1583
Bme18I	GGWCC	5 cut(s)	307, 458, 530, 544, 2395
BmeRI	GACNNNNNGTC	1 cut(s)	1537
BmgT120I	GGNCC	8 cut(s)	307, 458, 530, 544, 746, 747, 963, 2395
BmiI	GGNNCC	6 cut(s)	748, 749, 964, 2341, 2396, 2496
BmrFI	CCNGG	3 cut(s)	468, 548, 1583
BmsI	GCATC	5 cut(s)	338, 714, 1266, 1345, 1981
BpiI	GAAGAC	1 cut(s)	1564
BpmI	CTGGAG	2 cut(s)	247, 621
Bpu1102I	GCTNAGC	3 cut(s)	339, 1477, 2430
BpuEI	CTTGAG	1 cut(s)	75
BsaAI	YACGTR	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	466, 507, 547
BsaWI	WCCGGW	1 cut(s)	1340
Bsc4I	CCNNNNNNNGG	7 cut(s)	467, 977, 1323, 1324, 1325, 1326, 1736
Bse118I	RCCGGY	1 cut(s)	1340
Bse1I	ACTGG	8 cut(s)	173, 304, 604, 676, 1046, 1142, 1948, 2282
Bse21I	CCTNAGG	2 cut(s)	791, 1282
Bse3DI	GCAATG	4 cut(s)	199, 274, 1214, 1471
BseBI	CCWGG	3 cut(s)	468, 548, 1583
BseDI	CCNNGG	3 cut(s)	466, 507, 547
BseGI	GGATG	3 cut(s)	1569, 2056, 2177
BseLI	CCNNNNNNNGG	7 cut(s)	467, 977, 1323, 1324, 1325, 1326, 1736
BseMI	GCAATG	4 cut(s)	199, 274, 1214, 1471
BseMII	CTCAG	8 cut(s)	451, 508, 782, 1112, 1296, 1540, 1782, 1913
BseNI	ACTGG	8 cut(s)	173, 304, 604, 676, 1046, 1142, 1948, 2282
BseRI	GAGGAG	3 cut(s)	1437, 2456, 2459
BseSI	GKGCMC	1 cut(s)	750
BseXI	GCAGC	4 cut(s)	863, 1304, 1960, 1981
BseYI	CCCAGC	1 cut(s)	1706
BsgI	GTGCAG	4 cut(s)	1311, 1419, 1793, 2315
Bsh1236I	CGCG	1 cut(s)	585
BshFI	GGCC	6 cut(s)	506, 748, 965, 2262, 2281, 2602
BshNI	GGYRCC	1 cut(s)	2494
BshTI	ACCGGT	1 cut(s)	1340
BsiHKAI	GWGCWC	2 cut(s)	502, 1106
BsiSI	CCGG	1 cut(s)	1341
BslFI	GGGAC	5 cut(s)	118, 1094, 1141, 1729, 2408
BslI	CCNNNNNNNGG	7 cut(s)	467, 977, 1323, 1324, 1325, 1326, 1736
BsmAI	GTCTC	3 cut(s)	767, 1050, 1524
BsmFI	GGGAC	5 cut(s)	118, 1094, 1141, 1729, 2408
BsmI	GAATGC	1 cut(s)	1869
BsnI	GGCC	6 cut(s)	506, 748, 965, 2262, 2281, 2602
Bsp120I	GGGCCC	1 cut(s)	746
Bsp1286I	GDGCHC	3 cut(s)	502, 750, 1106
Bsp1407I	TGTACA	1 cut(s)	1425
Bsp143I	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
Bsp1720I	GCTNAGC	3 cut(s)	339, 1477, 2430
BspACI	CCGC	2 cut(s)	125, 1693
BspANI	GGCC	6 cut(s)	506, 748, 965, 2262, 2281, 2602
BspCNI	CTCAG	8 cut(s)	450, 507, 783, 1111, 1295, 1539, 1781, 1914
BspFNI	CGCG	1 cut(s)	585
BspLI	GGNNCC	6 cut(s)	748, 749, 964, 2341, 2396, 2496
BspPI	GGATC	2 cut(s)	1052, 1941
BspT107I	GGYRCC	1 cut(s)	2494
BspTI	CTTAAG	2 cut(s)	353, 805
BsrDI	GCAATG	4 cut(s)	199, 274, 1214, 1471
BsrFI	RCCGGY	1 cut(s)	1340
BsrGI	TGTACA	1 cut(s)	1425
BsrI	ACTGG	8 cut(s)	173, 304, 604, 676, 1046, 1142, 1948, 2282
BssAI	RCCGGY	1 cut(s)	1340
BssECI	CCNNGG	3 cut(s)	466, 507, 547
BssMI	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
BssT1I	CCWWGG	1 cut(s)	507
Bst2UI	CCWGG	3 cut(s)	468, 548, 1583
Bst4CI	ACNGT	6 cut(s)	20, 1061, 1498, 1550, 2166, 2546
BstAFI	CTTAAG	2 cut(s)	353, 805
BstAPI	GCANNNNNTGC	1 cut(s)	273
BstAUI	TGTACA	1 cut(s)	1425
BstBAI	YACGTR	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	336, 729
BstENI	CCTNNNNNAGG	1 cut(s)	1734
BstF5I	GGATG	3 cut(s)	1569, 2056, 2177
BstFNI	CGCG	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	587
BstKTI	GATC	7 cut(s)	226, 382, 940, 1047, 1207, 1650, 1936
BstMAI	GTCTC	3 cut(s)	767, 1050, 1524
BstMBI	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
BstMWI	GCNNNNNNNGC	7 cut(s)	61, 273, 335, 340, 2287, 2411, 2641
BstNI	CCWGG	3 cut(s)	468, 548, 1583
BstNSI	RCATGY	1 cut(s)	856
BstSCI	CCNGG	3 cut(s)	466, 546, 1581
BstSFI	CTRYAG	1 cut(s)	2481
BstSLI	GKGCMC	1 cut(s)	750
BstUI	CGCG	1 cut(s)	585
BstV1I	GCAGC	4 cut(s)	863, 1304, 1960, 1981
BstV2I	GAAGAC	1 cut(s)	1564
BstX2I	RGATCY	2 cut(s)	937, 1933
BstXI	CCANNNNNNTGG	1 cut(s)	405
BstYI	RGATCY	2 cut(s)	937, 1933
Bsu36I	CCTNAGG	2 cut(s)	791, 1282
BsuI	GTATCC	1 cut(s)	2480
BsuRI	GGCC	6 cut(s)	506, 748, 965, 2262, 2281, 2602
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	3 cut(s)	1569, 2056, 2177
BtsIMutI	CAGTG	7 cut(s)	184, 445, 597, 669, 1494, 1706, 1776
Cac8I	GCNNGC	2 cut(s)	336, 729
CaiI	CAGNNNCTG	1 cut(s)	862
CfoI	GCGC	1 cut(s)	587
Cfr10I	RCCGGY	1 cut(s)	1340
Cfr13I	GGNCC	8 cut(s)	307, 458, 530, 544, 746, 747, 963, 2395
Csp6I	GTAC	6 cut(s)	77, 644, 1210, 1426, 1595, 2212
CspAI	ACCGGT	1 cut(s)	1340
CviAII	CATG	9 cut(s)	186, 565, 844, 853, 916, 1194, 2128, 2215, 2491
CviQI	GTAC	6 cut(s)	77, 644, 1210, 1426, 1595, 2212
DpnI	GATC	7 cut(s)	225, 381, 939, 1046, 1206, 1649, 1935
DpnII	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
DraI	TTTAAA	1 cut(s)	1660
DriI	GACNNNNNGTC	1 cut(s)	1537
EaeI	YGGCCR	1 cut(s)	2600
Eam1105I	GACNNNNNGTC	1 cut(s)	1537
Ecl136II	GAGCTC	2 cut(s)	500, 1104
Eco130I	CCWWGG	1 cut(s)	507
Eco147I	AGGCCT	1 cut(s)	2262
Eco24I	GRGCYC	3 cut(s)	502, 750, 1106
Eco32I	GATATC	2 cut(s)	1078, 2365
Eco47I	GGWCC	5 cut(s)	307, 458, 530, 544, 2395
Eco53kI	GAGCTC	2 cut(s)	500, 1104
Eco57I	CTGAAG	2 cut(s)	632, 1619
Eco72I	CACGTG	1 cut(s)	401
Eco81I	CCTNAGG	2 cut(s)	791, 1282
EcoICRI	GAGCTC	2 cut(s)	500, 1104
EcoNI	CCTNNNNNAGG	1 cut(s)	1734
EcoO109I	RGGNCCY	5 cut(s)	307, 458, 746, 747, 2395
EcoRII	CCWGG	3 cut(s)	466, 546, 1581
EcoRV	GATATC	2 cut(s)	1078, 2365
EcoT14I	CCWWGG	1 cut(s)	507
EcoT38I	GRGCYC	3 cut(s)	502, 750, 1106
ErhI	CCWWGG	1 cut(s)	507
FaeI	CATG	9 cut(s)	189, 568, 847, 856, 919, 1197, 2131, 2218, 2494
FalI	AAGNNNNNCTT	2 cut(s)	735, 767
FaqI	GGGAC	5 cut(s)	118, 1094, 1141, 1729, 2408
FatI	CATG	9 cut(s)	185, 564, 843, 852, 915, 1193, 2127, 2214, 2490
FbaI	TGATCA	2 cut(s)	223, 1647
FblI	GTMKAC	1 cut(s)	2205
Fnu4HI	GCNGC	4 cut(s)	877, 1293, 1974, 1995
FokI	GGATG	3 cut(s)	1576, 2063, 2184
FriOI	GRGCYC	3 cut(s)	502, 750, 1106
Fsp4HI	GCNGC	4 cut(s)	877, 1293, 1974, 1995
FspBI	CTAG	4 cut(s)	311, 759, 1628, 2627
GlaI	GCGC	1 cut(s)	586
GluI	GCNGC	4 cut(s)	877, 1293, 1974, 1995
GsaI	CCCAGC	1 cut(s)	1710
GsuI	CTGGAG	2 cut(s)	247, 621
HaeIII	GGCC	6 cut(s)	506, 748, 965, 2262, 2281, 2602
HapII	CCGG	1 cut(s)	1341
HhaI	GCGC	1 cut(s)	587
Hin1II	CATG	9 cut(s)	189, 568, 847, 856, 919, 1197, 2131, 2218, 2494
Hin6I	GCGC	1 cut(s)	585
HinP1I	GCGC	1 cut(s)	585
HincII	GTYRAC	1 cut(s)	999
HindII	GTYRAC	1 cut(s)	999
HindIII	AAGCTT	4 cut(s)	715, 943, 2003, 2432
HinfI	GANTC	5 cut(s)	106, 394, 571, 1681, 1956
HpaII	CCGG	1 cut(s)	1341
HphI	GGTGA	4 cut(s)	812, 824, 1355, 1450
Hpy166II	GTNNAC	8 cut(s)	215, 445, 999, 1311, 1428, 2032, 2206, 2542
Hpy8I	GTNNAC	8 cut(s)	215, 445, 999, 1311, 1428, 2032, 2206, 2542
HpyCH4III	ACNGT	6 cut(s)	20, 1061, 1498, 1550, 2166, 2546
HpyCH4IV	ACGT	2 cut(s)	203, 400
HpyF10VI	GCNNNNNNNGC	7 cut(s)	61, 273, 335, 340, 2287, 2411, 2641
HpySE526I	ACGT	2 cut(s)	203, 400
Hsp92II	CATG	9 cut(s)	189, 568, 847, 856, 919, 1197, 2131, 2218, 2494
HspAI	GCGC	1 cut(s)	585
Ksp22I	TGATCA	2 cut(s)	223, 1647
Kzo9I	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
LmnI	GCTCC	5 cut(s)	260, 873, 2024, 2446, 2566
Lsp1109I	GCAGC	4 cut(s)	863, 1304, 1960, 1981
LweI	GCATC	5 cut(s)	338, 714, 1266, 1345, 1981
MaeI	CTAG	4 cut(s)	311, 759, 1628, 2627
MaeII	ACGT	2 cut(s)	203, 400
MaeIII	GTNAC	4 cut(s)	179, 659, 800, 1016
MalI	GATC	7 cut(s)	225, 381, 939, 1046, 1206, 1649, 1935
MboI	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
MfeI	CAATTG	4 cut(s)	250, 992, 1180, 1321
MflI	RGATCY	2 cut(s)	937, 1933
MhlI	GDGCHC	3 cut(s)	502, 750, 1106
MlyI	GAGTC	2 cut(s)	100, 1675
MmeI	TCCRAC	4 cut(s)	402, 680, 1534, 2284
MroXI	GAANNNNTTC	2 cut(s)	132, 1150
MslI	CAYNNNNRTG	2 cut(s)	403, 1769
MspCI	CTTAAG	2 cut(s)	353, 805
MspI	CCGG	1 cut(s)	1341
MspR9I	CCNGG	3 cut(s)	468, 548, 1583
MunI	CAATTG	4 cut(s)	250, 992, 1180, 1321
Mva1269I	GAATGC	1 cut(s)	1869
MvaI	CCWGG	3 cut(s)	468, 548, 1583
MvnI	CGCG	1 cut(s)	585
MwoI	GCNNNNNNNGC	7 cut(s)	61, 273, 335, 340, 2287, 2411, 2641
NdeII	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
NlaIII	CATG	9 cut(s)	189, 568, 847, 856, 919, 1197, 2131, 2218, 2494
NlaIV	GGNNCC	6 cut(s)	748, 749, 964, 2341, 2396, 2496
NmuCI	GTSAC	2 cut(s)	179, 800
NspI	RCATGY	1 cut(s)	856
PceI	AGGCCT	1 cut(s)	2262
PctI	GAATGC	1 cut(s)	1869
PdmI	GAANNNNTTC	2 cut(s)	132, 1150
PfeI	GAWTC	3 cut(s)	394, 571, 1956
PflMI	CCANNNNNTGG	1 cut(s)	977
PfoI	TCCNGGA	1 cut(s)	1581
PinAI	ACCGGT	1 cut(s)	1340
PkrI	GCNGC	4 cut(s)	878, 1294, 1975, 1996
PleI	GAGTC	2 cut(s)	100, 1675
PmaCI	CACGTG	1 cut(s)	401
PmlI	CACGTG	1 cut(s)	401
PpsI	GAGTC	2 cut(s)	100, 1675
Ppu21I	YACGTR	1 cut(s)	401
PpuMI	RGGWCCY	3 cut(s)	307, 458, 2395
Psp124BI	GAGCTC	2 cut(s)	502, 1106
Psp5II	RGGWCCY	3 cut(s)	307, 458, 2395
Psp6I	CCWGG	3 cut(s)	466, 546, 1581
PspCI	CACGTG	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	1706
PspGI	CCWGG	3 cut(s)	466, 546, 1581
PspN4I	GGNNCC	6 cut(s)	748, 749, 964, 2341, 2396, 2496
PspOMI	GGGCCC	1 cut(s)	746
PspPI	GGNCC	8 cut(s)	307, 458, 530, 544, 746, 747, 963, 2395
PspPPI	RGGWCCY	3 cut(s)	307, 458, 2395
PstNI	CAGNNNCTG	1 cut(s)	862
PsuI	RGATCY	2 cut(s)	937, 1933
RsaI	GTAC	6 cut(s)	78, 645, 1211, 1427, 1596, 2213
RsaNI	GTAC	6 cut(s)	77, 644, 1210, 1426, 1595, 2212
RseI	CAYNNNNRTG	2 cut(s)	403, 1769
SacI	GAGCTC	2 cut(s)	502, 1106
SatI	GCNGC	4 cut(s)	877, 1293, 1974, 1995
Sau3AI	GATC	7 cut(s)	223, 379, 937, 1044, 1204, 1647, 1933
Sau96I	GGNCC	8 cut(s)	307, 458, 530, 544, 746, 747, 963, 2395
ScaI	AGTACT	2 cut(s)	645, 1211
SchI	GAGTC	2 cut(s)	100, 1675
ScrFI	CCNGG	3 cut(s)	468, 548, 1583
SduI	GDGCHC	3 cut(s)	502, 750, 1106
SfaNI	GCATC	5 cut(s)	338, 714, 1266, 1345, 1981
SfcI	CTRYAG	1 cut(s)	2481
SgrAI	CRCCGGYG	1 cut(s)	1340
SinI	GGWCC	5 cut(s)	307, 458, 530, 544, 2395
SmiMI	CAYNNNNRTG	2 cut(s)	403, 1769
SmlI	CTYRAG	3 cut(s)	90, 353, 805
SmoI	CTYRAG	3 cut(s)	90, 353, 805
SseBI	AGGCCT	1 cut(s)	2262
SsiI	CCGC	2 cut(s)	125, 1693
SspMI	CTAG	4 cut(s)	311, 759, 1628, 2627
SstI	GAGCTC	2 cut(s)	502, 1106
StuI	AGGCCT	1 cut(s)	2262
StyD4I	CCNGG	3 cut(s)	466, 546, 1581
StyI	CCWWGG	1 cut(s)	507
TaaI	ACNGT	6 cut(s)	20, 1061, 1498, 1550, 2166, 2546
TaiI	ACGT	2 cut(s)	206, 403
TaqI	TCGA	2 cut(s)	392, 1123
TatI	WGTACW	4 cut(s)	643, 1209, 1425, 2211
TfiI	GAWTC	3 cut(s)	394, 571, 1956
TscAI	CASTG	7 cut(s)	184, 445, 604, 676, 1501, 1706, 1776
TseFI	GTSAC	2 cut(s)	179, 800
TseI	GCWGC	4 cut(s)	876, 1292, 1973, 1994
Tsp45I	GTSAC	2 cut(s)	179, 800
TspDTI	ATGAA	6 cut(s)	135, 1281, 1290, 1424, 2133, 2345
TspGWI	ACGGA	3 cut(s)	1576, 2195, 2281
TspRI	CASTG	7 cut(s)	184, 445, 604, 676, 1501, 1706, 1776
Van91I	CCANNNNNTGG	1 cut(s)	977
Vha464I	CTTAAG	2 cut(s)	353, 805
VpaK11BI	GGWCC	5 cut(s)	307, 458, 530, 544, 2395
XagI	CCTNNNNNAGG	1 cut(s)	1734
XapI	RAATTY	7 cut(s)	172, 425, 824, 832, 973, 2108, 2611
XbaI	TCTAGA	1 cut(s)	2626
XceI	RCATGY	1 cut(s)	856
XcmI	CCANNNNNNNNNTGG	2 cut(s)	922, 2383
XmiI	GTMKAC	1 cut(s)	2205
XmnI	GAANNNNTTC	2 cut(s)	132, 1150
XspI	CTAG	4 cut(s)	311, 759, 1628, 2627
ZrmI	AGTACT	2 cut(s)	645, 1211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.