Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000134

Physical Location & Seq

Genomic Coordinates Reverse (-)

27988597 .. 27995175

Gene Structure 6579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56427

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2064 bp

ATGAGCAAATGTCTAGGTGGCAATTTCCCAAGGAACTTCCTCAGTGGCAATATACCGAGTGAATGGGCTTCTACAAAGTTGGAATTTATGAGTTTAGAGACAAACATGTTTACTGGAACTGTTCCTCCTGAACTTGGGAAGTTGGTTAACTTACAAAATCTGAGGATTAGCAGTAACAACTTCACTGGAAGAATTCCAGACTTTTTCCGAAGTTGGAGTCAACTTATAAAATTGGAGATCCAAGCTAGTGTTCAGTACTCATTGCATATAAATTGTGGTGGAGGAGCGACCACCATTGGAGGAGTCAAATTTGAAGATGATACAGATCTTGGCGGTGGAGCAAAATTTGTTCCAGTGAGACCTAACTGGGGAACCAGTAGCACTGGATTTTTCTGGGATACTAATGTCACCTCTACAGACTACATAGCAAATAATGCATCGATACTTGGAATGGAAAACTCTCAGTTGTACACTCATGTGCGCCTCAGTCCTCTTTCTCTCACATATTATGCAAACTGTTTAGCAGATGGAAATTATACTGTCAAACTTCACTTTGCGGAGATAATAATCCGAGGCAATAGATCGTTTTTCAGTGTTGGAAGACGGATATTTGATGTTTATATCCAGGAGAAACTTGTATGGAAGGATTTTGACATCGTAAAGGAAGCACCAGGGGTTGATAAGGTAGTCATTAAAGTAACAAATGCAGTTCAAGTTACAAACAAAACTCTAGAGATTCGGTTTCATTGGTCTGGGAAAGGCACAACAGCATCCCCTAGACGAGGAATCTATGGTCCCCTTATATCAGCCATTTCTATAGAGCCTGAATTCAAGCATTCCAAAACAAAGACGTATATTTTGGTTGGAGTTTCAATTGGAGCTTTGGTTTTGTGCCTGTTATTAATTTTTGGCATCCTTTGGTGGAAAGGCTGTCTGGTGGATAGTCAGACATTAAGGGAAGAAGTTCTGAGAGGACTGGATCTGCGGACTGGCTTTTTCACCTTGACGCAAATTAAAGCTGCCACTAATAACTTTGATCCTTTAAGCAAAATTGGAGAAGGTGGTTTTGGTCCCGTATACAAGGGTATACTATTGGATGGTACTATAATTGCAGTTAAGCAACTATCTTCAAAATCGAAGCAGGGAAATCATGAATTTGTTAACGAAATAGGCATGATCTCTTGTTTGCAGCATCCAAATCTGGTAAGACTGTATGGATGTTGTATTGAAGCAAACCAGTTATTGTTGGTGTATGAGTATTTGGAGAACAATAGCCTTGCTCGCGCTTTGTACGGTCCAGATGATGATCCTTTAAACTTGGCTTGGCCTACAAGGCAGAAAATATGCCTAGGCATAGCAAAAGGTCTGACTTATCTGCATGAGGAATCGGCAGTGAAGGTTGTACATAGAGACATCAAAACTACGAATGTGTTACTGGACCAAGACCTCAATGCCAAGATCTCAGACTTTGGTTTGGCCAAGCTTGATGAAGAGGAGAAAACTCACATTAGCACCAAGGTTGCTGGAACTATAGGCTATATGGCACCGGAATATGCTCTATGGGGTTGTTTGACCTTTAAAGCAGATGTCTATAGTTTTGGAATTGTTGCGTTAGAAATTGTTGCAGGAAAGAACATGAAATATCGACCCAGTGAGAACATTCAATGTCTTATGGATTGGGCCCTTGTTTTGCAACAAAAAGGGAACTTACTGGAGCTAGTGGATCCGAGGTTGGGGTCTGATTTCAGTAAGAAAGAGGCGATTAGAATGATCAAAGTAGCTCTACTGTGCGCCAATCCAGCAGCTACTCTTAGGCCTATCATGTCTGAAGTAGTGAGTATGCTTGAAGGGCGGACCGCCGTGGAAGAAGTGATTCTGGATCCAAGTATCCATGGTGATGAAATTACGAGGTTAAGAGCATTTGAAGAGCAGTTTGATCAAAGTACTGCACAAGGGAGCTCCGCAAGTGGAAGTCATAGCCTCGTTCGTTCATCAGATGCACCATGGACGGGTTCTTCTGTTGCTACTACGTCTTCAGATCTCTATAAAGTTTATTCTAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0002682 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0008152 GO:0009506 GO:0009605 GO:0009607 GO:0009611 GO:0009814 GO:0009861 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030054 GO:0031347 GO:0036211 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0048583 GO:0050776 GO:0050789 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_1 LRR_8 Malectin Pkinase Pkinase_Tyr

Protein Analysis

687

Amino Acids

75.86

Weight (kDa)

6.66

Isoelectric Point (pI)

33.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Malectin	PF11721	87 - 271	3.4e-37	Malectin domain
Pkinase	PF00069	348 - 554	3e-45	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	349 - 555	2.2e-45	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000134)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica	MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica	Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis	pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis	RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata	RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora	Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii	Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa	Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha	Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana	Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	1543
AccI	GTMKAC	2 cut(s)	1077, 1087
AccII	CGCG	1 cut(s)	1284
AciI	CCGC	6 cut(s)	333, 557, 985, 1852, 1857, 1962
AclWI	GGATC	8 cut(s)	232, 987, 1031, 1301, 1718, 1731, 1874, 1887
AcoI	YGGCCR	1 cut(s)	1476
AcsI	RAATTY	6 cut(s)	83, 192, 308, 344, 827, 1154
AcuI	CTGAAG	2 cut(s)	1848, 2019
AfaI	GTAC	6 cut(s)	257, 470, 1102, 1292, 1404, 1945
AfiI	CCNNNNNNNGG	5 cut(s)	134, 368, 782, 1733, 2009
AflIII	ACRYGT	1 cut(s)	105
AgsI	TTSAA	9 cut(s)	314, 713, 832, 873, 1131, 1229, 1664, 1847, 1925
AjnI	CCWGG	2 cut(s)	624, 670
AjuI	GAANNNNNNNTTGG	4 cut(s)	234, 266, 1050, 1082
AleI	CACNNNNGTG	1 cut(s)	476
AloI	GAACNNNNNNTCC	2 cut(s)	109, 141
AluBI	AGCT	8 cut(s)	245, 881, 1019, 1483, 1717, 1781, 1805, 1959
AluI	AGCT	8 cut(s)	245, 881, 1019, 1483, 1717, 1781, 1805, 1959
Alw21I	GWGCWC	1 cut(s)	1961
Alw26I	GTCTC	3 cut(s)	92, 352, 1404
AlwI	GGATC	8 cut(s)	232, 987, 1031, 1301, 1718, 1731, 1874, 1887
AoxI	GGCC	4 cut(s)	1325, 1476, 1680, 1814
ApaI	GGGCCC	1 cut(s)	1684
ApeKI	GCWGC	3 cut(s)	1019, 1189, 1802
ApoI	RAATTY	6 cut(s)	83, 192, 308, 344, 827, 1154
ArsI	GACNNNNNNTTYG	4 cut(s)	202, 234, 841, 873
AseI	ATTAAT	1 cut(s)	902
Asp700I	GAANNNNTTC	2 cut(s)	963, 1872
AspA2I	CCTAGG	1 cut(s)	1348
AspLEI	GCGC	3 cut(s)	483, 1286, 1793
AspS9I	GGNCC	7 cut(s)	794, 1070, 1295, 1438, 1680, 1681, 1854
AsuHPI	GGTGA	3 cut(s)	400, 991, 1907
AvaII	GGWCC	5 cut(s)	794, 1070, 1295, 1438, 1854
AvrII	CCTAGG	1 cut(s)	1348
BaeGI	GKGCMC	1 cut(s)	1684
BaeI	ACNNNNGTAYC	2 cut(s)	390, 423
BalI	TGGCCA	1 cut(s)	1478
BamHI	GGATCC	2 cut(s)	1723, 1879
BanI	GGYRCC	1 cut(s)	1543
BanII	GRGCYC	2 cut(s)	1684, 1961
BbsI	GAAGAC	2 cut(s)	607, 2025
Bbv12I	GWGCWC	1 cut(s)	1961
BbvI	GCAGC	3 cut(s)	1006, 1201, 1814
BccI	CCATC	2 cut(s)	521, 1091
BceAI	ACGGC	1 cut(s)	1844
BciT130I	CCWGG	2 cut(s)	626, 672
BciVI	GTATCC	2 cut(s)	391, 1898
BclI	TGATCA	2 cut(s)	1770, 1936
BcoDI	GTCTC	3 cut(s)	92, 352, 1404
BfaI	CTAG	7 cut(s)	14, 246, 731, 777, 1349, 1718, 2058
BfmI	CTRYAG	4 cut(s)	414, 816, 1530, 1591
BfuI	GTATCC	2 cut(s)	391, 1898
BglI	GCCNNNNNGGC	1 cut(s)	1333
BglII	AGATCT	3 cut(s)	325, 1458, 2038
BisI	GCNGC	3 cut(s)	1020, 1190, 1803
BlnI	CCTAGG	1 cut(s)	1348
BlsI	GCNGC	3 cut(s)	1021, 1191, 1804
BmcAI	AGTACT	2 cut(s)	257, 1945
Bme1390I	CCNGG	2 cut(s)	626, 672
Bme18I	GGWCC	5 cut(s)	794, 1070, 1295, 1438, 1854
BmgT120I	GGNCC	7 cut(s)	794, 1070, 1295, 1438, 1680, 1681, 1854
BmiI	GGNNCC	7 cut(s)	373, 796, 1072, 1545, 1682, 1725, 1881
BmrFI	CCNGG	2 cut(s)	626, 672
BmrI	ACTGGG	2 cut(s)	376, 1644
BmsI	GCATC	5 cut(s)	446, 779, 921, 1201, 1987
BmuI	ACTGGG	2 cut(s)	376, 1644
BpiI	GAAGAC	2 cut(s)	607, 2025
BpmI	CTGGAG	1 cut(s)	1733
Bsa29I	ATCGAT	1 cut(s)	440
BsaBI	GATNNNNATC	3 cut(s)	324, 566, 1305
BsaI	GGTCTC	1 cut(s)	352
BsaJI	CCNNGG	9 cut(s)	29, 571, 671, 1348, 1515, 1727, 1860, 1891, 2003
BsaWI	WCCGGW	1 cut(s)	1546
BsaXI	ACNNNNNCTCC	4 cut(s)	109, 139, 870, 900
Bsc4I	CCNNNNNNNGG	5 cut(s)	134, 368, 782, 1733, 2009
Bse3DI	GCAATG	1 cut(s)	260
Bse8I	GATNNNNATC	3 cut(s)	324, 566, 1305
BseBI	CCWGG	2 cut(s)	626, 672
BseCI	ATCGAT	1 cut(s)	440
BseDI	CCNNGG	9 cut(s)	29, 571, 671, 1348, 1515, 1727, 1860, 1891, 2003
BseGI	GGATG	5 cut(s)	770, 912, 1102, 1192, 1223
BseJI	GATNNNNATC	3 cut(s)	324, 566, 1305
BseLI	CCNNNNNNNGG	5 cut(s)	134, 368, 782, 1733, 2009
BseMI	GCAATG	1 cut(s)	260
BseMII	CTCAG	6 cut(s)	55, 152, 476, 499, 959, 1476
BseRI	GAGGAG	3 cut(s)	297, 315, 1508
BseSI	GKGCMC	1 cut(s)	1684
BseXI	GCAGC	3 cut(s)	1006, 1201, 1814
BsgI	GTGCAG	1 cut(s)	1932
Bsh1236I	CGCG	1 cut(s)	1284
BshFI	GGCC	4 cut(s)	1327, 1478, 1682, 1816
BshNI	GGYRCC	1 cut(s)	1543
BshVI	ATCGAT	1 cut(s)	440
BsiHKAI	GWGCWC	1 cut(s)	1961
BsiSI	CCGG	1 cut(s)	1547
BslFI	GGGAC	2 cut(s)	780, 1056
BslI	CCNNNNNNNGG	5 cut(s)	134, 368, 782, 1733, 2009
BsmAI	GTCTC	3 cut(s)	92, 352, 1404
BsmFI	GGGAC	2 cut(s)	780, 1056
BsmI	GAATGC	1 cut(s)	835
BsnI	GGCC	4 cut(s)	1327, 1478, 1682, 1816
Bso31I	GGTCTC	1 cut(s)	352
Bsp120I	GGGCCC	1 cut(s)	1680
Bsp1286I	GDGCHC	2 cut(s)	1684, 1961
Bsp1407I	TGTACA	2 cut(s)	468, 1402
Bsp19I	CCATGG	2 cut(s)	1891, 2003
BspACI	CCGC	6 cut(s)	333, 557, 985, 1852, 1857, 1962
BspANI	GGCC	4 cut(s)	1327, 1478, 1682, 1816
BspCNI	CTCAG	6 cut(s)	54, 153, 475, 498, 960, 1475
BspDI	ATCGAT	1 cut(s)	440
BspFNI	CGCG	1 cut(s)	1284
BspHI	TCATGA	1 cut(s)	1150
BspLI	GGNNCC	7 cut(s)	373, 796, 1072, 1545, 1682, 1725, 1881
BspPI	GGATC	8 cut(s)	232, 987, 1031, 1301, 1718, 1731, 1874, 1887
BspQI	GCTCTTC	1 cut(s)	1920
BspT107I	GGYRCC	1 cut(s)	1543
BspTNI	GGTCTC	1 cut(s)	352
BsrDI	GCAATG	1 cut(s)	260
BsrGI	TGTACA	2 cut(s)	468, 1402
BssECI	CCNNGG	9 cut(s)	29, 571, 671, 1348, 1515, 1727, 1860, 1891, 2003
BssNAI	GTATAC	2 cut(s)	1078, 1088
BssT1I	CCWWGG	5 cut(s)	29, 1348, 1515, 1891, 2003
Bst1107I	GTATAC	2 cut(s)	1078, 1088
Bst2UI	CCWGG	2 cut(s)	626, 672
Bst4CI	ACNGT	6 cut(s)	121, 518, 541, 1212, 1295, 1788
Bst6I	CTCTTC	2 cut(s)	1485, 1920
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstAUI	TGTACA	2 cut(s)	468, 1402
BstC8I	GCNNGC	1 cut(s)	1282
BstDEI	CTNAG	7 cut(s)	41, 161, 462, 485, 968, 1462, 1811
BstDSI	CCRYGG	3 cut(s)	1860, 1891, 2003
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	5 cut(s)	770, 912, 1102, 1192, 1223
BstFNI	CGCG	1 cut(s)	1284
BstHHI	GCGC	3 cut(s)	483, 1286, 1793
BstMAI	GTCTC	3 cut(s)	92, 352, 1404
BstMWI	GCNNNNNNNGC	5 cut(s)	434, 1281, 1333, 1799, 1849
BstNI	CCWGG	2 cut(s)	626, 672
BstNSI	RCATGY	1 cut(s)	109
BstSCI	CCNGG	2 cut(s)	624, 670
BstSFI	CTRYAG	4 cut(s)	414, 816, 1530, 1591
BstSLI	GKGCMC	1 cut(s)	1684
BstUI	CGCG	1 cut(s)	1284
BstV1I	GCAGC	3 cut(s)	1006, 1201, 1814
BstV2I	GAAGAC	2 cut(s)	607, 2025
BstX2I	RGATCY	7 cut(s)	237, 325, 979, 1458, 1723, 1879, 2038
BstYI	RGATCY	7 cut(s)	237, 325, 979, 1458, 1723, 1879, 2038
BstZ17I	GTATAC	2 cut(s)	1078, 1088
Bsu15I	ATCGAT	1 cut(s)	440
BsuI	GTATCC	2 cut(s)	391, 1898
BsuRI	GGCC	4 cut(s)	1327, 1478, 1682, 1816
BsuTUI	ATCGAT	1 cut(s)	440
BtgI	CCRYGG	3 cut(s)	1860, 1891, 2003
BtsCI	GGATG	5 cut(s)	770, 912, 1102, 1192, 1223
BtsI	GCAGTG	1 cut(s)	1398
BtsIMutI	CAGTG	7 cut(s)	49, 183, 360, 381, 598, 1398, 1657
Cac8I	GCNNGC	1 cut(s)	1282
CciI	TCATGA	1 cut(s)	1150
CfoI	GCGC	3 cut(s)	483, 1286, 1793
Cfr13I	GGNCC	7 cut(s)	794, 1070, 1295, 1438, 1680, 1681, 1854
ClaI	ATCGAT	1 cut(s)	440
CpoI	CGGWCCG	1 cut(s)	1854
CseI	GACGC	1 cut(s)	1015
Csp6I	GTAC	6 cut(s)	256, 469, 1101, 1291, 1403, 1944
CspI	CGGWCCG	1 cut(s)	1854
CviAII	CATG	9 cut(s)	106, 476, 1151, 1174, 1379, 1636, 1822, 1892, 2004
CviQI	GTAC	6 cut(s)	256, 469, 1101, 1291, 1403, 1944
DdeI	CTNAG	7 cut(s)	41, 161, 462, 485, 968, 1462, 1811
DraI	TTTAAA	2 cut(s)	1314, 1579
EaeI	YGGCCR	1 cut(s)	1476
Eam1104I	CTCTTC	2 cut(s)	1485, 1920
EarI	CTCTTC	2 cut(s)	1485, 1920
EciI	GGCGGA	1 cut(s)	1867
Ecl136II	GAGCTC	1 cut(s)	1959
Eco130I	CCWWGG	5 cut(s)	29, 1348, 1515, 1891, 2003
Eco147I	AGGCCT	1 cut(s)	1816
Eco24I	GRGCYC	2 cut(s)	1684, 1961
Eco31I	GGTCTC	1 cut(s)	352
Eco47I	GGWCC	5 cut(s)	794, 1070, 1295, 1438, 1854
Eco53kI	GAGCTC	1 cut(s)	1959
Eco57I	CTGAAG	2 cut(s)	1848, 2019
EcoICRI	GAGCTC	1 cut(s)	1959
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoO109I	RGGNCCY	1 cut(s)	1681
EcoRI	GAATTC	2 cut(s)	192, 827
EcoRII	CCWGG	2 cut(s)	624, 670
EcoT14I	CCWWGG	5 cut(s)	29, 1348, 1515, 1891, 2003
EcoT22I	ATGCAT	1 cut(s)	439
EcoT38I	GRGCYC	2 cut(s)	1684, 1961
ErhI	CCWWGG	5 cut(s)	29, 1348, 1515, 1891, 2003
FaeI	CATG	9 cut(s)	109, 479, 1154, 1177, 1382, 1639, 1825, 1895, 2007
FaqI	GGGAC	2 cut(s)	780, 1056
FatI	CATG	9 cut(s)	105, 475, 1150, 1173, 1378, 1635, 1821, 1891, 2003
FbaI	TGATCA	2 cut(s)	1770, 1936
FblI	GTMKAC	2 cut(s)	1077, 1087
Fnu4HI	GCNGC	3 cut(s)	1020, 1190, 1803
FokI	GGATG	5 cut(s)	757, 899, 1109, 1179, 1230
FriOI	GRGCYC	2 cut(s)	1684, 1961
Fsp4HI	GCNGC	3 cut(s)	1020, 1190, 1803
FspBI	CTAG	7 cut(s)	14, 246, 731, 777, 1349, 1718, 2058
GlaI	GCGC	3 cut(s)	482, 1285, 1792
GluI	GCNGC	3 cut(s)	1020, 1190, 1803
GsuI	CTGGAG	1 cut(s)	1733
HaeIII	GGCC	4 cut(s)	1327, 1478, 1682, 1816
HapII	CCGG	1 cut(s)	1547
HgaI	GACGC	1 cut(s)	1015
HhaI	GCGC	3 cut(s)	483, 1286, 1793
Hin1II	CATG	9 cut(s)	109, 479, 1154, 1177, 1382, 1639, 1825, 1895, 2007
Hin6I	GCGC	3 cut(s)	481, 1284, 1791
HinP1I	GCGC	3 cut(s)	481, 1284, 1791
HincII	GTYRAC	3 cut(s)	148, 221, 1162
HindII	GTYRAC	3 cut(s)	148, 221, 1162
HindIII	AAGCTT	1 cut(s)	1481
HinfI	GANTC	6 cut(s)	217, 303, 736, 786, 1385, 1873
HpaI	GTTAAC	2 cut(s)	148, 1162
HpaII	CCGG	1 cut(s)	1547
HphI	GGTGA	3 cut(s)	400, 991, 1907
Hpy166II	GTNNAC	7 cut(s)	111, 148, 221, 471, 1078, 1088, 1162
Hpy188III	TCNNGA	6 cut(s)	128, 197, 731, 1151, 1298, 1877
Hpy8I	GTNNAC	7 cut(s)	111, 148, 221, 471, 1078, 1088, 1162
HpyAV	CCTTC	4 cut(s)	637, 1052, 1390, 1841
HpyCH4III	ACNGT	6 cut(s)	121, 518, 541, 1212, 1295, 1788
HpyCH4IV	ACGT	2 cut(s)	851, 2030
HpyF10VI	GCNNNNNNNGC	5 cut(s)	434, 1281, 1333, 1799, 1849
HpyF3I	CTNAG	7 cut(s)	41, 161, 462, 485, 968, 1462, 1811
HpySE526I	ACGT	2 cut(s)	851, 2030
Hsp92II	CATG	9 cut(s)	109, 479, 1154, 1177, 1382, 1639, 1825, 1895, 2007
HspAI	GCGC	3 cut(s)	481, 1284, 1791
Ksp22I	TGATCA	2 cut(s)	1770, 1936
KspAI	GTTAAC	2 cut(s)	148, 1162
LguI	GCTCTTC	1 cut(s)	1920
LmnI	GCTCC	6 cut(s)	284, 338, 878, 1714, 1956, 1964
Lsp1109I	GCAGC	3 cut(s)	1006, 1201, 1814
LweI	GCATC	5 cut(s)	446, 779, 921, 1201, 1987
MaeI	CTAG	7 cut(s)	14, 246, 731, 777, 1349, 1718, 2058
MaeII	ACGT	2 cut(s)	851, 2030
MaeIII	GTNAC	5 cut(s)	173, 406, 697, 715, 1431
MfeI	CAATTG	1 cut(s)	873
MflI	RGATCY	7 cut(s)	237, 325, 979, 1458, 1723, 1879, 2038
MhlI	GDGCHC	2 cut(s)	1684, 1961
MlsI	TGGCCA	1 cut(s)	1478
MluNI	TGGCCA	1 cut(s)	1478
MlyI	GAGTC	2 cut(s)	226, 312
MmeI	TCCRAC	4 cut(s)	60, 194, 577, 844
Mox20I	TGGCCA	1 cut(s)	1478
Mph1103I	ATGCAT	1 cut(s)	439
MroXI	GAANNNNTTC	2 cut(s)	963, 1872
MscI	TGGCCA	1 cut(s)	1478
MslI	CAYNNNNRTG	2 cut(s)	476, 1896
Msp20I	TGGCCA	1 cut(s)	1478
MspI	CCGG	1 cut(s)	1547
MspR9I	CCNGG	2 cut(s)	626, 672
MunI	CAATTG	1 cut(s)	873
Mva1269I	GAATGC	1 cut(s)	835
MvaI	CCWGG	2 cut(s)	626, 672
MvnI	CGCG	1 cut(s)	1284
MwoI	GCNNNNNNNGC	5 cut(s)	434, 1281, 1333, 1799, 1849
NcoI	CCATGG	2 cut(s)	1891, 2003
NlaIII	CATG	9 cut(s)	109, 479, 1154, 1177, 1382, 1639, 1825, 1895, 2007
NlaIV	GGNNCC	7 cut(s)	373, 796, 1072, 1545, 1682, 1725, 1881
NmuCI	GTSAC	1 cut(s)	406
NsiI	ATGCAT	1 cut(s)	439
NspI	RCATGY	1 cut(s)	109
OliI	CACNNNNGTG	1 cut(s)	476
PagI	TCATGA	1 cut(s)	1150
PceI	AGGCCT	1 cut(s)	1816
PciI	ACATGT	1 cut(s)	105
PciSI	GCTCTTC	1 cut(s)	1920
PctI	GAATGC	1 cut(s)	835
PdmI	GAANNNNTTC	2 cut(s)	963, 1872
PfeI	GAWTC	4 cut(s)	736, 786, 1385, 1873
PfoI	TCCNGGA	1 cut(s)	624
PkrI	GCNGC	3 cut(s)	1021, 1191, 1804
PleI	GAGTC	2 cut(s)	225, 311
PpsI	GAGTC	2 cut(s)	225, 311
PscI	ACATGT	1 cut(s)	105
PshBI	ATTAAT	1 cut(s)	902
PsiI	TTATAA	1 cut(s)	227
Psp124BI	GAGCTC	1 cut(s)	1961
Psp6I	CCWGG	2 cut(s)	624, 670
PspGI	CCWGG	2 cut(s)	624, 670
PspN4I	GGNNCC	7 cut(s)	373, 796, 1072, 1545, 1682, 1725, 1881
PspOMI	GGGCCC	1 cut(s)	1680
PspPI	GGNCC	7 cut(s)	794, 1070, 1295, 1438, 1680, 1681, 1854
PsuI	RGATCY	7 cut(s)	237, 325, 979, 1458, 1723, 1879, 2038
RsaI	GTAC	6 cut(s)	257, 470, 1102, 1292, 1404, 1945
RsaNI	GTAC	6 cut(s)	256, 469, 1101, 1291, 1403, 1944
RseI	CAYNNNNRTG	2 cut(s)	476, 1896
Rsr2I	CGGWCCG	1 cut(s)	1854
RsrII	CGGWCCG	1 cut(s)	1854
SacI	GAGCTC	1 cut(s)	1961
SapI	GCTCTTC	1 cut(s)	1920
SatI	GCNGC	3 cut(s)	1020, 1190, 1803
Sau96I	GGNCC	7 cut(s)	794, 1070, 1295, 1438, 1680, 1681, 1854
ScaI	AGTACT	2 cut(s)	257, 1945
SchI	GAGTC	2 cut(s)	226, 312
ScrFI	CCNGG	2 cut(s)	626, 672
SduI	GDGCHC	2 cut(s)	1684, 1961
SfaNI	GCATC	5 cut(s)	446, 779, 921, 1201, 1987
SfcI	CTRYAG	4 cut(s)	414, 816, 1530, 1591
SinI	GGWCC	5 cut(s)	794, 1070, 1295, 1438, 1854
SmiMI	CAYNNNNRTG	2 cut(s)	476, 1896
SseBI	AGGCCT	1 cut(s)	1816
SsiI	CCGC	6 cut(s)	333, 557, 985, 1852, 1857, 1962
SspMI	CTAG	7 cut(s)	14, 246, 731, 777, 1349, 1718, 2058
SstI	GAGCTC	1 cut(s)	1961
StuI	AGGCCT	1 cut(s)	1816
StyD4I	CCNGG	2 cut(s)	624, 670
StyI	CCWWGG	5 cut(s)	29, 1348, 1515, 1891, 2003
TaaI	ACNGT	6 cut(s)	121, 518, 541, 1212, 1295, 1788
TaiI	ACGT	2 cut(s)	854, 2033
TaqI	TCGA	3 cut(s)	440, 1136, 1645
TatI	WGTACW	4 cut(s)	255, 468, 1402, 1943
TfiI	GAWTC	4 cut(s)	736, 786, 1385, 1873
TscAI	CASTG	7 cut(s)	49, 190, 360, 388, 598, 1398, 1657
TseFI	GTSAC	1 cut(s)	406
TseI	GCWGC	3 cut(s)	1019, 1189, 1802
Tsp45I	GTSAC	1 cut(s)	406
TspDTI	ATGAA	6 cut(s)	734, 1167, 1503, 1652, 1914, 1980
TspGWI	ACGGA	1 cut(s)	619
TspRI	CASTG	7 cut(s)	49, 190, 360, 388, 598, 1398, 1657
VpaK11BI	GGWCC	5 cut(s)	794, 1070, 1295, 1438, 1854
VspI	ATTAAT	1 cut(s)	902
XagI	CCTNNNNNAGG	1 cut(s)	780
XapI	RAATTY	6 cut(s)	83, 192, 308, 344, 827, 1154
XbaI	TCTAGA	1 cut(s)	730
XceI	RCATGY	1 cut(s)	109
XmaJI	CCTAGG	1 cut(s)	1348
XmiI	GTMKAC	2 cut(s)	1077, 1087
XmnI	GAANNNNTTC	2 cut(s)	963, 1872
XspI	CTAG	7 cut(s)	14, 246, 731, 777, 1349, 1718, 2058
ZrmI	AGTACT	2 cut(s)	257, 1945
Zsp2I	ATGCAT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.