Rh5AG235500

receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
28526524 .. 28578117
51594 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG235500.1

Sequence Viewer

Length: 738 bp
ATGGCAGTGGCCAGAGTAGGGGTTAAGCCACAGAAGAAGAACGTTGTGGCGGATGGGAGAAACCGAAAACCACTGGGTGAGATTGATGAGAAATTTCGGGCAAATGAGAACTTTGTAGGCCTTGTGGATTGGGCCCTTGTTTTACAACAAAAAGGGAATCTAATGGAGCTGGTGGATCCAAGGCTGGGGTCCGATTTCAGCAAGGAAGAGGCAATTAGAATGGTCGAAGTAGCTCTACTGTGCACCAATCCGGCACCAGCACTTAGGCCAACGATGTCTGCAGTAGTGAGTATGCTTGAAGGGCGGAGCGTCGTTCATGAATTGACTATGGATCCAAGTATCTATGGTGATGAGACGAGGTTGACAGCCTCGAGGGACCGGTTTGAGACGTTTGCTGCAGAAGAGAGTGGAACTCAGAGCTTCTTGCGTGGATCAGATGCAACATCGATTGATATAGTTGACAGAAACTGGCCATCATCTTCCAAGAAAAATGAAGGTCCAGAGGAAGGTCAAGTAAGATTGGACTGGCCTACAAGGCAGGGAATATGTATAGGCATAGCAAAAGGTCTGGCTTTTTTGCATGAGGAATCAGCACTTAAGGTTGTGCATAGGGACATCAAAACAACGAATGTGCTATTGGACCAAGACCTTAATGCTAAGATCTCGGATTTTGGTCTGGCCAAGCTTCACGAAGAAGAGAACACCCACATTAGCACCAGAGTTGCTGGAACCATGTAA

Protein Analysis

245

Amino Acids

27.07

Weight (kDa)

5.5

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 171 - 236 8.1e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 181 - 242 1.4e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000134)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g06801 FvH4_3g06801 FvH4_3g06810 FvH4_3g06830 FvH4_3g06840 FvH4_3g06840 FvH4_3g06840 FvH4_3g06860 FvH4_3g06860 FvH4_3g06900 FvH4_3g06920 FvH4_3g06940 FvH4_3g06960 FvH4_3g06991 FvH4_3g06991 FvH4_3g07041 FvH4_3g07042 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g07044 FvH4_3g20230 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_3g20240 FvH4_4g01431 FvH4_4g01431 FvH4_4g01520
malus_domestica MD00G1006500.v1.1 MD00G1006600.v1.1 MD00G1186000.v1.1 MD05G1294300.v1.1 MD05G1294500.v1.1 MD05G1294700.v1.1 MD05G1294800.v1.1 MD05G1295100.v1.1 MD10G1272300.v1.1 MD10G1272800.v1.1 MD10G1273000.v1.1 MD10G1273200.v1.1 MD10G1273300.v1.1
prunus_persica Prupe.4G069300_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069400_v2.0.a1 Prupe.4G069500_v2.0.a1 Prupe.4G069600_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069700_v2.0.a1 Prupe.4G069800_v2.0.a1
pyrus_communis pycom05g27150 pycom10g22770 pycom10g22780 pycom10g22790 pycom10g22800 pycom11g23550 pycom11g23590
rosa_chinensis RchiOBHm_Chr1g0336311 RchiOBHm_Chr3g0460871 RchiOBHm_Chr5g0012161 RchiOBHm_Chr5g0012181 RchiOBHm_Chr5g0012191 RchiOBHm_Chr5g0012201 RchiOBHm_Chr5g0012221 RchiOBHm_Chr5g0012241 RchiOBHm_Chr5g0012251 RchiOBHm_Chr5g0012261 RchiOBHm_Chr5g0012271 RchiOBHm_Chr5g0012291 RchiOBHm_Chr5g0012301 RchiOBHm_Chr5g0012321 RchiOBHm_Chr5g0034051 RchiOBHm_Chr5g0034071 RchiOBHm_Chr5g0034091 RchiOBHm_Chr5g0080321 RchiOBHm_Chr7g0226661
rosa_laevigata RLG00000001709 RLG00000003039 RLG00000009208 RLG00000021256 RLG00000031886 RLG00000031891 RLG00000031892 RLG00000031895 RLG00000031896 RLG00000031897 RLG00000031898 RLG00000031899 RLG00000031900 RLG00000031903 RLG00000033520 RLG00000033522 RLG00000033524 RLG00000033525
rosa_multiflora Rmu_co8172290.1_g000001 Rmu_co8214942.1_g000001 Rmu_co8328697.1_g000001 Rmu_sc0001608.1_g000041 Rmu_sc0003368.1_g000024 Rmu_sc0003701.1_g000002 Rmu_sc0003765.1_g000052 Rmu_sc0005343.1_g000007 Rmu_sc0005343.1_g000008 Rmu_sc0006603.1_g000004 Rmu_sc0007030.1_g000001 Rmu_sc0007030.1_g000006 Rmu_sc0007176.1_g000013 Rmu_sc0009761.1_g000006 Rmu_sc0009761.1_g000007 Rmu_sc0012149.1_g000012 Rmu_sc0013327.1_g000001 Rmu_sc0013327.1_g000003 Rmu_sc0014215.1_g000004 Rmu_ssc0000128.1_g000005 Rmu_ssc0000128.1_g000012 Rmu_ssc0000128.1_g000016 Rmu_ssc0000217.1_g000012 Rmu_ssc0000217.1_g000014 Rmu_ssc0000217.1_g000018 Rmu_ssc0000217.1_g000020 Rmu_ssc0000217.1_g000026 Rmu_ssc0000217.1_g000037
rosa_roxburghii Rroxscaffold_1G00014960 Rroxscaffold_1G00046140 Rroxscaffold_1G00046190 Rroxscaffold_1G00064330 Rroxscaffold_1G00064370 Rroxscaffold_1G00064380 Rroxscaffold_1G00064390 Rroxscaffold_1G00064400 Rroxscaffold_1G00064420 Rroxscaffold_1G00064430 Rroxscaffold_1G00064460 Rroxscaffold_1G00064470 Rroxscaffold_1G00064480 Rroxscaffold_2G00092560 Rroxscaffold_3G00232520 Rroxscaffold_3G00236850 Rroxscaffold_4G00292720 Rroxscaffold_4G00315770 Rroxscaffold_4G00315780 Rroxscaffold_4G00315790
rosa_rugosa Rorug01G0123800 Rorug01G0123900 Rorug01G0124000 Rorug01G0124000 Rorug03G0284000 Rorug04G0090200 Rorug05G0000200 Rorug05G0000200 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000300 Rorug05G0000400 Rorug05G0000600 Rorug05G0144300 Rorug05G0144300
rosa_samantha Rh1CG135900 Rh2DG334300 Rh2DG334500 Rh5AG090300 Rh5AG093400 Rh5AG093500 Rh5AG093900 Rh5AG094000 Rh5AG094100 Rh5AG094200 Rh5AG094400 Rh5AG094600 Rh5AG100500 Rh5AG235400 Rh5AG235500 Rh5BG089400 Rh5BG412100 Rh5CG103100 Rh5CG103800 Rh5CG103900 Rh6AG058500 Rh6BG478600 Rh6CG484600 Rh7AG387000
rosa_wichuraiana Rw0G004700 Rw1G011820 Rw5G007880 Rw5G008160 Rw5G008170 Rw5G008180 Rw5G008200 Rw5G008210 Rw5G008220 Rw5G008230 Rw5G008240 Rw5G008260 Rw5G021250 Rw5G021260 Rw5G021390 Rw5G021400 Rw5G021410 Rw5G021420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 253
AciI CCGC 2 cut(s) 50, 304
AclI AACGTT 1 cut(s) 42
AclWI GGATC 5 cut(s) 170, 183, 326, 339, 439
AcoI YGGCCR 3 cut(s) 9, 470, 678
AcsI RAATTY 1 cut(s) 92
AdeI CACNNNGTG 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 18, 185, 506
AflII CTTAAG 1 cut(s) 596
AgeI ACCGGT 1 cut(s) 378
AgsI TTSAA 1 cut(s) 299
AjuI GAANNNNNNNTTGG 2 cut(s) 620, 652
AluBI AGCT 4 cut(s) 169, 233, 420, 685
AluI AGCT 4 cut(s) 169, 233, 420, 685
Alw21I GWGCWC 1 cut(s) 245
Alw26I GTCTC 2 cut(s) 347, 380
Alw44I GTGCAC 1 cut(s) 241
AlwI GGATC 5 cut(s) 170, 183, 326, 339, 439
AlwNI CAGNNNCTG 1 cut(s) 468
Ama87I CYCGRG 1 cut(s) 370
AoxI GGCC 7 cut(s) 9, 118, 132, 266, 470, 527, 678
ApaI GGGCCC 1 cut(s) 136
ApaLI GTGCAC 1 cut(s) 241
ApeKI GCWGC 1 cut(s) 395
ApoI RAATTY 1 cut(s) 92
AsiGI ACCGGT 1 cut(s) 378
AspS9I GGNCC 6 cut(s) 132, 133, 189, 376, 497, 640
AsuHPI GGTGA 2 cut(s) 89, 359
AvaI CYCGRG 1 cut(s) 370
AvaII GGWCC 4 cut(s) 189, 376, 497, 640
BaeGI GKGCMC 2 cut(s) 136, 245
BalI TGGCCA 3 cut(s) 11, 472, 680
BamHI GGATCC 2 cut(s) 175, 331
BanI GGYRCC 1 cut(s) 253
BanII GRGCYC 1 cut(s) 136
BarI GAAGNNNNNNTAC 2 cut(s) 219, 251
Bbv12I GWGCWC 1 cut(s) 245
BbvI GCAGC 1 cut(s) 382
BccI CCATC 2 cut(s) 47, 481
BcoDI GTCTC 2 cut(s) 347, 380
BfmI CTRYAG 2 cut(s) 279, 396
BfrI CTTAAG 1 cut(s) 596
BglI GCCNNNNNGGC 1 cut(s) 535
BglII AGATCT 1 cut(s) 660
BisI GCNGC 1 cut(s) 396
BlsI GCNGC 1 cut(s) 397
Bme18I GGWCC 4 cut(s) 189, 376, 497, 640
BmeT110I CYCGRG 1 cut(s) 370
BmgT120I GGNCC 6 cut(s) 132, 133, 189, 376, 497, 640
BmiI GGNNCC 7 cut(s) 134, 177, 190, 255, 333, 377, 730
BmrI ACTGGG 1 cut(s) 83
BmsI GCATC 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 83
BplI GAGNNNNNCTC 2 cut(s) 397, 429
Bsa29I ATCGAT 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 179
BsaWI WCCGGW 1 cut(s) 378
Bsc4I CCNNNNNNNGG 3 cut(s) 18, 185, 506
Bse118I RCCGGY 1 cut(s) 378
Bse1I ACTGG 3 cut(s) 78, 473, 530
BseCI ATCGAT 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 179
BseGI GGATG 1 cut(s) 58
BseLI CCNNNNNNNGG 3 cut(s) 18, 185, 506
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 3 cut(s) 78, 473, 530
BseSI GKGCMC 2 cut(s) 136, 245
BseXI GCAGC 1 cut(s) 382
BseYI CCCAGC 1 cut(s) 184
BshFI GGCC 7 cut(s) 11, 120, 134, 268, 472, 529, 680
BshNI GGYRCC 1 cut(s) 253
BshTI ACCGGT 1 cut(s) 378
BshVI ATCGAT 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 245
BsiHKCI CYCGRG 1 cut(s) 370
BsiSI CCGG 2 cut(s) 251, 379
BslFI GGGAC 2 cut(s) 389, 626
BslI CCNNNNNNNGG 3 cut(s) 18, 185, 506
BsmAI GTCTC 2 cut(s) 347, 380
BsmBI CGTCTC 2 cut(s) 347, 380
BsmFI GGGAC 2 cut(s) 389, 626
BsnI GGCC 7 cut(s) 11, 120, 134, 268, 472, 529, 680
BsoBI CYCGRG 1 cut(s) 370
Bsp120I GGGCCC 1 cut(s) 132
Bsp1286I GDGCHC 2 cut(s) 136, 245
Bsp143I GATC 4 cut(s) 175, 331, 431, 660
BspACI CCGC 2 cut(s) 50, 304
BspANI GGCC 7 cut(s) 11, 120, 134, 268, 472, 529, 680
BspCNI CTCAG 1 cut(s) 427
BspDI ATCGAT 1 cut(s) 446
BspHI TCATGA 1 cut(s) 316
BspLI GGNNCC 7 cut(s) 134, 177, 190, 255, 333, 377, 730
BspMAI CTGCAG 2 cut(s) 283, 400
BspPI GGATC 5 cut(s) 170, 183, 326, 339, 439
BspT107I GGYRCC 1 cut(s) 253
BspTI CTTAAG 1 cut(s) 596
BsrFI RCCGGY 1 cut(s) 378
BsrI ACTGG 3 cut(s) 78, 473, 530
BssAI RCCGGY 1 cut(s) 378
BssECI CCNNGG 1 cut(s) 179
BssMI GATC 4 cut(s) 175, 331, 431, 660
BssT1I CCWWGG 1 cut(s) 179
Bst4CI ACNGT 1 cut(s) 240
Bst6I CTCTTC 3 cut(s) 201, 396, 690
BstAFI CTTAAG 1 cut(s) 596
BstDEI CTNAG 3 cut(s) 263, 414, 657
BstF5I GGATG 1 cut(s) 58
BstKTI GATC 4 cut(s) 178, 334, 434, 663
BstMAI GTCTC 2 cut(s) 347, 380
BstMBI GATC 4 cut(s) 175, 331, 431, 660
BstMWI GCNNNNNNNGC 2 cut(s) 301, 535
BstSFI CTRYAG 2 cut(s) 279, 396
BstSLI GKGCMC 2 cut(s) 136, 245
BstV1I GCAGC 1 cut(s) 382
BstX2I RGATCY 3 cut(s) 175, 331, 660
BstYI RGATCY 3 cut(s) 175, 331, 660
Bsu15I ATCGAT 1 cut(s) 446
BsuRI GGCC 7 cut(s) 11, 120, 134, 268, 472, 529, 680
BsuTUI ATCGAT 1 cut(s) 446
BtsCI GGATG 1 cut(s) 58
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 2 cut(s) 12, 71
CaiI CAGNNNCTG 1 cut(s) 468
CciI TCATGA 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 378
Cfr13I GGNCC 6 cut(s) 132, 133, 189, 376, 497, 640
ClaI ATCGAT 1 cut(s) 446
CseI GACGC 1 cut(s) 298
CspAI ACCGGT 1 cut(s) 378
CviAII CATG 3 cut(s) 317, 581, 733
DdeI CTNAG 3 cut(s) 263, 414, 657
DpnI GATC 4 cut(s) 177, 333, 433, 662
DpnII GATC 4 cut(s) 175, 331, 431, 660
DraIII CACNNNGTG 1 cut(s) 77
EaeI YGGCCR 3 cut(s) 9, 470, 678
Eam1104I CTCTTC 3 cut(s) 201, 396, 690
EarI CTCTTC 3 cut(s) 201, 396, 690
EciI GGCGGA 2 cut(s) 65, 319
Eco130I CCWWGG 1 cut(s) 179
Eco147I AGGCCT 1 cut(s) 120
Eco24I GRGCYC 1 cut(s) 136
Eco47I GGWCC 4 cut(s) 189, 376, 497, 640
Eco88I CYCGRG 1 cut(s) 370
EcoO109I RGGNCCY 1 cut(s) 133
EcoT14I CCWWGG 1 cut(s) 179
EcoT38I GRGCYC 1 cut(s) 136
ErhI CCWWGG 1 cut(s) 179
Esp3I CGTCTC 2 cut(s) 347, 380
FaeI CATG 3 cut(s) 320, 584, 736
FaqI GGGAC 2 cut(s) 389, 626
FatI CATG 3 cut(s) 316, 580, 732
Fnu4HI GCNGC 1 cut(s) 396
FokI GGATG 1 cut(s) 65
FriOI GRGCYC 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 396
GluI GCNGC 1 cut(s) 396
GsaI CCCAGC 1 cut(s) 188
HaeIII GGCC 7 cut(s) 11, 120, 134, 268, 472, 529, 680
HapII CCGG 2 cut(s) 251, 379
HgaI GACGC 1 cut(s) 298
Hin1II CATG 3 cut(s) 320, 584, 736
HincII GTYRAC 2 cut(s) 363, 460
HindII GTYRAC 2 cut(s) 363, 460
HindIII AAGCTT 1 cut(s) 683
HinfI GANTC 2 cut(s) 157, 587
HpaII CCGG 2 cut(s) 251, 379
HphI GGTGA 2 cut(s) 89, 359
Hpy166II GTNNAC 3 cut(s) 243, 363, 460
Hpy188I TCNGA 4 cut(s) 193, 417, 436, 667
Hpy188III TCNNGA 3 cut(s) 317, 500, 689
Hpy8I GTNNAC 3 cut(s) 243, 363, 460
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 3 cut(s) 293, 488, 500
HpyCH4III ACNGT 1 cut(s) 240
HpyCH4IV ACGT 2 cut(s) 42, 389
HpyCH4V TGCA 6 cut(s) 243, 281, 398, 440, 580, 607
HpyF10VI GCNNNNNNNGC 2 cut(s) 301, 535
HpyF3I CTNAG 3 cut(s) 263, 414, 657
HpySE526I ACGT 2 cut(s) 42, 389
Hsp92II CATG 3 cut(s) 320, 584, 736
Kzo9I GATC 4 cut(s) 175, 331, 431, 660
LmnI GCTCC 2 cut(s) 166, 306
Lsp1109I GCAGC 1 cut(s) 382
LweI GCATC 1 cut(s) 427
MaeII ACGT 2 cut(s) 42, 389
MalI GATC 4 cut(s) 177, 333, 433, 662
MboI GATC 4 cut(s) 175, 331, 431, 660
MboII GAAGA 7 cut(s) 46, 49, 218, 413, 471, 704, 707
MflI RGATCY 3 cut(s) 175, 331, 660
MhlI GDGCHC 2 cut(s) 136, 245
MlsI TGGCCA 3 cut(s) 11, 472, 680
MluCI AATT 3 cut(s) 92, 213, 320
MluNI TGGCCA 3 cut(s) 11, 472, 680
MnlI CCTC 6 cut(s) 202, 351, 366, 379, 496, 577
Mox20I TGGCCA 3 cut(s) 11, 472, 680
MscI TGGCCA 3 cut(s) 11, 472, 680
MseI TTAA 3 cut(s) 24, 597, 651
Msp20I TGGCCA 3 cut(s) 11, 472, 680
MspCI CTTAAG 1 cut(s) 596
MspI CCGG 2 cut(s) 251, 379
MwoI GCNNNNNNNGC 2 cut(s) 301, 535
NdeII GATC 4 cut(s) 175, 331, 431, 660
NlaIII CATG 3 cut(s) 320, 584, 736
NlaIV GGNNCC 7 cut(s) 134, 177, 190, 255, 333, 377, 730
PaeR7I CTCGAG 1 cut(s) 370
PagI TCATGA 1 cut(s) 316
PceI AGGCCT 1 cut(s) 120
PfeI GAWTC 2 cut(s) 157, 587
PinAI ACCGGT 1 cut(s) 378
PkrI GCNGC 1 cut(s) 397
Psp1406I AACGTT 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 184
PspN4I GGNNCC 7 cut(s) 134, 177, 190, 255, 333, 377, 730
PspOMI GGGCCC 1 cut(s) 132
PspPI GGNCC 6 cut(s) 132, 133, 189, 376, 497, 640
PspXI VCTCGAGB 1 cut(s) 370
PstI CTGCAG 2 cut(s) 283, 400
PstNI CAGNNNCTG 1 cut(s) 468
PsuI RGATCY 3 cut(s) 175, 331, 660
SaqAI TTAA 3 cut(s) 24, 597, 651
SatI GCNGC 1 cut(s) 396
Sau3AI GATC 4 cut(s) 175, 331, 431, 660
Sau96I GGNCC 6 cut(s) 132, 133, 189, 376, 497, 640
SduI GDGCHC 2 cut(s) 136, 245
SfaNI GCATC 1 cut(s) 427
SfcI CTRYAG 2 cut(s) 279, 396
Sfr274I CTCGAG 1 cut(s) 370
SinI GGWCC 4 cut(s) 189, 376, 497, 640
SlaI CTCGAG 1 cut(s) 370
SmlI CTYRAG 2 cut(s) 370, 596
SmoI CTYRAG 2 cut(s) 370, 596
Sse9I AATT 3 cut(s) 92, 213, 320
SseBI AGGCCT 1 cut(s) 120
SsiI CCGC 2 cut(s) 50, 304
StuI AGGCCT 1 cut(s) 120
StyI CCWWGG 1 cut(s) 179
TaaI ACNGT 1 cut(s) 240
TaiI ACGT 2 cut(s) 45, 392
TaqI TCGA 3 cut(s) 225, 371, 446
TasI AATT 3 cut(s) 92, 213, 320
TfiI GAWTC 2 cut(s) 157, 587
Tru1I TTAA 3 cut(s) 24, 597, 651
Tru9I TTAA 3 cut(s) 24, 597, 651
TscAI CASTG 2 cut(s) 12, 78
TseI GCWGC 1 cut(s) 395
TspDTI ATGAA 3 cut(s) 305, 333, 507
TspRI CASTG 2 cut(s) 12, 78
Vha464I CTTAAG 1 cut(s) 596
VneI GTGCAC 1 cut(s) 241
VpaK11BI GGWCC 4 cut(s) 189, 376, 497, 640
XapI RAATTY 1 cut(s) 92
XhoI CTCGAG 1 cut(s) 370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.