Prupe.4G182600_v2.0.a1

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016289
Physical Location & Seq
Reverse (-)
10815979 .. 10816956
978 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G182600.1

Sequence Viewer

Length: 561 bp
ATGCACGGCCACACAAAATTCACCACTCTCAGCCGTCTATTTTGGATCGGCAACTTAGCTTTCTGCACTGCAGGTTTATTTCTCATTGCCTTCATGCATCACATTGTTGGAACCATATTTTCTTGGTTTCCAAACAGAAGCCAGAACGATCACGAAATTGGAGACGACCGATCTCCCCATCATCATGATCAAGATTCGTTGCAACAAGCACCTGCACAAGATATTGTAGCCCTGTTCCACATGGTGTTGATGGAAGTGCTAGATAGGGTTTGGGAGGATTTGGTGACGGAGGAAGGGCCAGAGCAACGTCCTCAGGCTGCGGCCCTCCAATTTCAAGCCTTGGAGGCGCTCCCGCCGCCTTTGCAGTACTGCAAGGGCGGTCTTGACATAACATCGAGTTGCTGTGGGGATCGGTGTACTATTTGCTTGGATGATTTCATGGATGGCGAGTCTTGCCGTGTTTTCGCATGCAACCACATGTTTCATTCAAATTGCATTGATCCTTGGTTAAAGAACCACCTAACTTGCCCAATTTGTCGAAACTCTGTTGTACATGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

187

Amino Acids

21.09

Weight (kDa)

5.48

Isoelectric Point (pI)

59.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20220
malus_domestica MD03G1226900.v1.1 MD11G1244100.v1.1
prunus_persica Prupe.4G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0034041
rosa_laevigata RLG00000033519
rosa_multiflora Rmu_co8356837.1_g000001
rosa_roxburghii Rroxscaffold_1G00046200
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235300 Rh5BG236000 Rh5CG265900 Rh5DG242900
rosa_wichuraiana Rw5G021240 Rw5G021430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 220
Acc36I ACCTGC 2 cut(s) 62, 220
AciI CCGC 4 cut(s) 320, 353, 356, 378
AclWI GGATC 3 cut(s) 53, 417, 494
AcoI YGGCCR 1 cut(s) 7
AcsI RAATTY 1 cut(s) 17
AdeI CACNNNGTG 1 cut(s) 244
AfaI GTAC 3 cut(s) 368, 418, 552
AflIII ACRYGT 2 cut(s) 477, 553
AgsI TTSAA 2 cut(s) 335, 489
AluBI AGCT 1 cut(s) 59
AluI AGCT 1 cut(s) 59
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 3 cut(s) 53, 417, 494
AoxI GGCC 3 cut(s) 7, 296, 321
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 1 cut(s) 17
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 2 cut(s) 296, 322
AsuHPI GGTGA 2 cut(s) 13, 295
AxyI CCTNAGG 1 cut(s) 312
BbvI GCAGC 1 cut(s) 304
BccI CCATC 3 cut(s) 186, 244, 437
BceAI ACGGC 3 cut(s) 18, 22, 441
BclI TGATCA 1 cut(s) 187
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 1 cut(s) 260
BfmI CTRYAG 1 cut(s) 69
BfoI RGCGCY 1 cut(s) 350
BfuAI ACCTGC 2 cut(s) 62, 220
BglI GCCNNNNNGGC 1 cut(s) 344
BisI GCNGC 3 cut(s) 318, 321, 356
BlsI GCNGC 3 cut(s) 319, 322, 357
BmcAI AGTACT 1 cut(s) 368
BmgT120I GGNCC 2 cut(s) 296, 322
BmiI GGNNCC 1 cut(s) 112
BmsI GCATC 1 cut(s) 106
BsaJI CCNNGG 2 cut(s) 339, 503
Bse21I CCTNAGG 1 cut(s) 312
Bse3DI GCAATG 1 cut(s) 84
BseDI CCNNGG 2 cut(s) 339, 503
BseGI GGATG 2 cut(s) 436, 448
BseMI GCAATG 1 cut(s) 84
BseMII CTCAG 2 cut(s) 43, 326
BseXI GCAGC 1 cut(s) 304
BsgI GTGCAG 2 cut(s) 49, 198
Bsh1285I CGRYCG 1 cut(s) 169
BshFI GGCC 3 cut(s) 9, 298, 323
BsiEI CGRYCG 1 cut(s) 169
BsmAI GTCTC 1 cut(s) 156
BsmBI CGTCTC 1 cut(s) 156
BsnI GGCC 3 cut(s) 9, 298, 323
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 6 cut(s) 45, 148, 170, 187, 409, 499
BspACI CCGC 4 cut(s) 320, 353, 356, 378
BspANI GGCC 3 cut(s) 9, 298, 323
BspCNI CTCAG 2 cut(s) 42, 325
BspHI TCATGA 1 cut(s) 184
BspLI GGNNCC 1 cut(s) 112
BspMAI CTGCAG 1 cut(s) 73
BspMI ACCTGC 2 cut(s) 62, 220
BspPI GGATC 3 cut(s) 53, 417, 494
BsrDI GCAATG 1 cut(s) 84
BsrGI TGTACA 1 cut(s) 550
BssECI CCNNGG 2 cut(s) 339, 503
BssMI GATC 6 cut(s) 45, 148, 170, 187, 409, 499
BssT1I CCWWGG 2 cut(s) 339, 503
BstAUI TGTACA 1 cut(s) 550
BstC8I GCNNGC 1 cut(s) 469
BstDEI CTNAG 3 cut(s) 29, 55, 312
BstF5I GGATG 2 cut(s) 436, 448
BstH2I RGCGCY 1 cut(s) 350
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 6 cut(s) 48, 151, 173, 190, 412, 502
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 6 cut(s) 45, 148, 170, 187, 409, 499
BstMCI CGRYCG 1 cut(s) 169
BstMWI GCNNNNNNNGC 4 cut(s) 344, 355, 361, 453
BstNSI RCATGY 3 cut(s) 471, 481, 557
BstSFI CTRYAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 304
Bsu36I CCTNAGG 1 cut(s) 312
BsuRI GGCC 3 cut(s) 9, 298, 323
BtsCI GGATG 2 cut(s) 436, 448
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
BveI ACCTGC 2 cut(s) 62, 220
Cac8I GCNNGC 1 cut(s) 469
CciI TCATGA 1 cut(s) 184
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 2 cut(s) 296, 322
Csp6I GTAC 3 cut(s) 367, 417, 551
CspCI CAANNNNNGTGG 2 cut(s) 506, 541
CviAII CATG 7 cut(s) 94, 185, 241, 439, 468, 478, 554
CviJI RGCY 9 cut(s) 9, 33, 59, 141, 230, 298, 317, 323, 338
CviKI_1 RGCY 9 cut(s) 9, 33, 59, 141, 230, 298, 317, 323, 338
CviQI GTAC 3 cut(s) 367, 417, 551
DdeI CTNAG 3 cut(s) 29, 55, 312
DpnI GATC 6 cut(s) 47, 150, 172, 189, 411, 501
DpnII GATC 6 cut(s) 45, 148, 170, 187, 409, 499
DraIII CACNNNGTG 1 cut(s) 244
EaeI YGGCCR 1 cut(s) 7
Eco130I CCWWGG 2 cut(s) 339, 503
Eco81I CCTNAGG 1 cut(s) 312
EcoT14I CCWWGG 2 cut(s) 339, 503
EcoT22I ATGCAT 1 cut(s) 99
ErhI CCWWGG 2 cut(s) 339, 503
Esp3I CGTCTC 1 cut(s) 156
FaeI CATG 7 cut(s) 97, 188, 244, 442, 471, 481, 557
FaiI YATR 9 cut(s) 95, 116, 186, 242, 389, 440, 469, 479, 555
FatI CATG 7 cut(s) 93, 184, 240, 438, 467, 477, 553
FauI CCCGC 1 cut(s) 360
FbaI TGATCA 1 cut(s) 187
Fnu4HI GCNGC 3 cut(s) 318, 321, 356
FokI GGATG 2 cut(s) 443, 455
Fsp4HI GCNGC 3 cut(s) 318, 321, 356
FspBI CTAG 1 cut(s) 260
GlaI GCGC 1 cut(s) 348
GluI GCNGC 3 cut(s) 318, 321, 356
HaeII RGCGCY 1 cut(s) 350
HaeIII GGCC 3 cut(s) 9, 298, 323
HhaI GCGC 1 cut(s) 349
Hin1II CATG 7 cut(s) 97, 188, 244, 442, 471, 481, 557
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HinfI GANTC 2 cut(s) 194, 449
HphI GGTGA 2 cut(s) 13, 295
Hpy166II GTNNAC 1 cut(s) 417
Hpy188I TCNGA 1 cut(s) 560
Hpy188III TCNNGA 4 cut(s) 152, 185, 191, 383
Hpy8I GTNNAC 1 cut(s) 417
HpyAV CCTTC 2 cut(s) 100, 287
HpyCH4IV ACGT 1 cut(s) 307
HpyF10VI GCNNNNNNNGC 4 cut(s) 344, 355, 361, 453
HpyF3I CTNAG 3 cut(s) 29, 55, 312
HpySE526I ACGT 1 cut(s) 307
Hsp92II CATG 7 cut(s) 97, 188, 244, 442, 471, 481, 557
HspAI GCGC 1 cut(s) 347
Ksp22I TGATCA 1 cut(s) 187
Kzo9I GATC 6 cut(s) 45, 148, 170, 187, 409, 499
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 6 cut(s) 57, 155, 225, 245, 299, 312
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 106
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 307
MaeIII GTNAC 1 cut(s) 283
MalI GATC 6 cut(s) 47, 150, 172, 189, 411, 501
MboI GATC 6 cut(s) 45, 148, 170, 187, 409, 499
MluCI AATT 5 cut(s) 17, 156, 329, 490, 531
MlyI GAGTC 1 cut(s) 458
MmeI TCCRAC 1 cut(s) 88
MnlI CCTC 5 cut(s) 268, 283, 321, 335, 337
Mph1103I ATGCAT 1 cut(s) 99
MseI TTAA 1 cut(s) 509
MslI CAYNNNNRTG 1 cut(s) 183
MwoI GCNNNNNNNGC 4 cut(s) 344, 355, 361, 453
NdeII GATC 6 cut(s) 45, 148, 170, 187, 409, 499
NlaIII CATG 7 cut(s) 97, 188, 244, 442, 471, 481, 557
NlaIV GGNNCC 1 cut(s) 112
NmuCI GTSAC 1 cut(s) 283
NsiI ATGCAT 1 cut(s) 99
NspI RCATGY 3 cut(s) 471, 481, 557
PaeI GCATGC 1 cut(s) 471
PagI TCATGA 1 cut(s) 184
PaqCI CACCTGC 1 cut(s) 220
PciI ACATGT 2 cut(s) 477, 553
PfeI GAWTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 319, 322, 357
PleI GAGTC 1 cut(s) 457
PpsI GAGTC 1 cut(s) 457
PscI ACATGT 2 cut(s) 477, 553
PspN4I GGNNCC 1 cut(s) 112
PspPI GGNCC 2 cut(s) 296, 322
PstI CTGCAG 1 cut(s) 73
RsaI GTAC 3 cut(s) 368, 418, 552
RsaNI GTAC 3 cut(s) 367, 417, 551
RseI CAYNNNNRTG 1 cut(s) 183
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 3 cut(s) 318, 321, 356
Sau3AI GATC 6 cut(s) 45, 148, 170, 187, 409, 499
Sau96I GGNCC 2 cut(s) 296, 322
ScaI AGTACT 1 cut(s) 368
SchI GAGTC 1 cut(s) 458
SetI ASST 5 cut(s) 61, 76, 214, 310, 522
SfaNI GCATC 1 cut(s) 106
SfcI CTRYAG 1 cut(s) 69
SmiMI CAYNNNNRTG 1 cut(s) 183
SphI GCATGC 1 cut(s) 471
Sse9I AATT 5 cut(s) 17, 156, 329, 490, 531
SsiI CCGC 4 cut(s) 320, 353, 356, 378
SspMI CTAG 1 cut(s) 260
StyI CCWWGG 2 cut(s) 339, 503
TaiI ACGT 1 cut(s) 310
TaqI TCGA 2 cut(s) 395, 538
TaqII GACCGA 1 cut(s) 183
TasI AATT 5 cut(s) 17, 156, 329, 490, 531
TatI WGTACW 3 cut(s) 366, 416, 550
TauI GCSGC 2 cut(s) 323, 358
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 3 cut(s) 82, 427, 473
TspGWI ACGGA 1 cut(s) 302
TspRI CASTG 1 cut(s) 73
XapI RAATTY 1 cut(s) 17
XceI RCATGY 3 cut(s) 471, 481, 557
XspI CTAG 1 cut(s) 260
ZrmI AGTACT 1 cut(s) 368
Zsp2I ATGCAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.