Rmu_co8356837.1_g000001

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8356837.1
OG0016289
Physical Location & Seq
Forward (+)
181 .. 900
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8356837.1_g000001.1.cds

Sequence Viewer

Length: 720 bp
atgagcagcatgatctttaacccaagtgctcttttccatcaatctcctgctcacccctgcactcttttatctttcattttcgcccttggaatcgttgccatcttgtttttactaagccaggacaagtttacaccttcaggccgtctcgcaatctggatagcacttgccaaattaactctctgcaccgaaattctatttctcatcgcgctcatgcatcacattattggagtcatatgttcttggcttccatatggacgccgtaatgaccgagatattgaatcagccggggtaagaagccacattctaactggaattgttcatgttgagccatctgatttccatcacgatcccgatgaagaaacatggtcgcaagcaccggtgcaaaatgttgtaactatgttgcagatgttcttgatggaagtgcttgacacagtttgggaggacatggtaatagaggaagggcaagagcaaagcttccaggccattcaaacccaagccattgaggcacttccggggcctctgcaatactgcaaagctagcctggaaatatcgagctgctgcagcgatcggtgtgccatttgcttagaagatttcgtggatggcgagtcttgtcgcgttttcgagtgcaagcacatctttcatgctaattgcattgataattggttaaagaatggtctaacgtgcccgatttgtagaaactctcttgtgaagataaagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

239

Amino Acids

26.87

Weight (kDa)

5.16

Isoelectric Point (pI)

61.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20220
malus_domestica MD03G1226900.v1.1 MD11G1244100.v1.1
prunus_persica Prupe.4G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0034041
rosa_laevigata RLG00000033519
rosa_multiflora Rmu_co8356837.1_g000001
rosa_roxburghii Rroxscaffold_1G00046200
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235300 Rh5BG236000 Rh5CG265900 Rh5DG242900
rosa_wichuraiana Rw5G021240 Rw5G021430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 206, 615
AclWI GGATC 1 cut(s) 341
AcsI RAATTY 1 cut(s) 189
AcuI CTGAAG 1 cut(s) 120
AcyI GRCGYC 1 cut(s) 256
AgeI ACCGGT 1 cut(s) 376
AgsI TTSAA 2 cut(s) 278, 488
AjnI CCWGG 3 cut(s) 117, 477, 540
AluBI AGCT 3 cut(s) 474, 536, 555
AluI AGCT 3 cut(s) 474, 536, 555
Alw21I GWGCWC 1 cut(s) 31
Alw26I GTCTC 1 cut(s) 149
AlwI GGATC 1 cut(s) 341
AoxI GGCC 3 cut(s) 139, 480, 515
ApeKI GCWGC 4 cut(s) 6, 555, 558, 561
ApoI RAATTY 1 cut(s) 189
AsiGI ACCGGT 1 cut(s) 376
AspLEI GCGC 1 cut(s) 208
AspS9I GGNCC 1 cut(s) 515
AsuC2I CCSGG 2 cut(s) 286, 513
AsuHPI GGTGA 1 cut(s) 44
AsuNHI GCTAGC 1 cut(s) 536
BaeGI GKGCMC 1 cut(s) 686
Bbv12I GWGCWC 1 cut(s) 31
BbvI GCAGC 4 cut(s) 18, 542, 545, 573
BccI CCATC 6 cut(s) 45, 107, 337, 348, 409, 593
BceAI ACGGC 2 cut(s) 126, 243
BcgI CGANNNNNNTGC 2 cut(s) 554, 588
BciT130I CCWGG 3 cut(s) 119, 479, 542
BcnI CCSGG 2 cut(s) 286, 513
BcoDI GTCTC 1 cut(s) 149
BfaI CTAG 1 cut(s) 537
BfmI CTRYAG 1 cut(s) 559
BglI GCCNNNNNGGC 1 cut(s) 503
BisI GCNGC 4 cut(s) 7, 556, 559, 562
BlsI GCNGC 4 cut(s) 8, 557, 560, 563
Bme1390I CCNGG 5 cut(s) 119, 286, 479, 513, 542
BmgT120I GGNCC 1 cut(s) 515
BmiI GGNNCC 1 cut(s) 516
BmrFI CCNGG 5 cut(s) 119, 286, 479, 513, 542
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 540
BpuMI CCSGG 2 cut(s) 286, 513
BsaBI GATNNNNATC 1 cut(s) 339
BsaHI GRCGYC 1 cut(s) 256
BsaJI CCNNGG 3 cut(s) 85, 285, 512
BsaWI WCCGGW 1 cut(s) 376
Bse118I RCCGGY 1 cut(s) 376
Bse1I ACTGG 1 cut(s) 313
Bse8I GATNNNNATC 1 cut(s) 339
BseBI CCWGG 3 cut(s) 119, 479, 542
BseDI CCNNGG 3 cut(s) 85, 285, 512
BseGI GGATG 1 cut(s) 604
BseJI GATNNNNATC 1 cut(s) 339
BseNI ACTGG 1 cut(s) 313
BseSI GKGCMC 1 cut(s) 686
BseXI GCAGC 4 cut(s) 18, 542, 545, 573
BsgI GTGCAG 2 cut(s) 43, 166
Bsh1236I CGCG 2 cut(s) 206, 615
Bsh1285I CGRYCG 1 cut(s) 568
BshFI GGCC 3 cut(s) 141, 482, 517
BshTI ACCGGT 1 cut(s) 376
BsiEI CGRYCG 1 cut(s) 568
BsiHKAI GWGCWC 1 cut(s) 31
BsiSI CCGG 3 cut(s) 285, 377, 512
BsmAI GTCTC 1 cut(s) 149
BsmBI CGTCTC 1 cut(s) 149
BsnI GGCC 3 cut(s) 141, 482, 517
Bsp1286I GDGCHC 2 cut(s) 31, 686
Bsp143I GATC 3 cut(s) 12, 346, 565
BspANI GGCC 3 cut(s) 141, 482, 517
BspFNI CGCG 2 cut(s) 206, 615
BspLI GGNNCC 1 cut(s) 516
BspMAI CTGCAG 1 cut(s) 563
BspOI GCTAGC 1 cut(s) 540
BspPI GGATC 1 cut(s) 341
BsrFI RCCGGY 1 cut(s) 376
BsrI ACTGG 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 376
BssECI CCNNGG 3 cut(s) 85, 285, 512
BssMI GATC 3 cut(s) 12, 346, 565
BssNI GRCGYC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 85
Bst2UI CCWGG 3 cut(s) 119, 479, 542
Bst4CI ACNGT 1 cut(s) 433
BstACI GRCGYC 1 cut(s) 256
BstC8I GCNNGC 3 cut(s) 372, 538, 629
BstDEI CTNAG 2 cut(s) 113, 583
BstF5I GGATG 1 cut(s) 604
BstFNI CGCG 2 cut(s) 206, 615
BstHHI GCGC 1 cut(s) 208
BstKTI GATC 3 cut(s) 15, 349, 568
BstMAI GTCTC 1 cut(s) 149
BstMBI GATC 3 cut(s) 12, 346, 565
BstMCI CGRYCG 1 cut(s) 568
BstMWI GCNNNNNNNGC 3 cut(s) 503, 537, 561
BstNI CCWGG 3 cut(s) 119, 479, 542
BstSCI CCNGG 5 cut(s) 117, 284, 477, 511, 540
BstSFI CTRYAG 1 cut(s) 559
BstSLI GKGCMC 1 cut(s) 686
BstUI CGCG 2 cut(s) 206, 615
BstV1I GCAGC 4 cut(s) 18, 542, 545, 573
BsuRI GGCC 3 cut(s) 141, 482, 517
BtgZI GCGATG 1 cut(s) 187
BtsCI GGATG 1 cut(s) 604
Cac8I GCNNGC 3 cut(s) 372, 538, 629
CfoI GCGC 1 cut(s) 208
Cfr10I RCCGGY 1 cut(s) 376
Cfr13I GGNCC 1 cut(s) 515
CseI GACGC 1 cut(s) 264
CspAI ACCGGT 1 cut(s) 376
CviAII CATG 6 cut(s) 10, 211, 320, 363, 445, 641
DdeI CTNAG 2 cut(s) 113, 583
DpnI GATC 3 cut(s) 14, 348, 567
DpnII GATC 3 cut(s) 12, 346, 565
Eco130I CCWWGG 1 cut(s) 85
Eco57I CTGAAG 1 cut(s) 120
EcoO109I RGGNCCY 1 cut(s) 515
EcoRII CCWGG 3 cut(s) 117, 477, 540
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 149
FaeI CATG 6 cut(s) 13, 214, 323, 366, 448, 644
FalI AAGNNNNNCTT 2 cut(s) 620, 652
FatI CATG 6 cut(s) 9, 210, 319, 362, 444, 640
FauNDI CATATG 2 cut(s) 233, 250
Fnu4HI GCNGC 4 cut(s) 7, 556, 559, 562
FokI GGATG 1 cut(s) 611
Fsp4HI GCNGC 4 cut(s) 7, 556, 559, 562
FspBI CTAG 1 cut(s) 537
GlaI GCGC 1 cut(s) 207
GluI GCNGC 4 cut(s) 7, 556, 559, 562
HaeIII GGCC 3 cut(s) 141, 482, 517
HapII CCGG 3 cut(s) 285, 377, 512
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 256
Hin1II CATG 6 cut(s) 13, 214, 323, 366, 448, 644
Hin6I GCGC 1 cut(s) 206
HinP1I GCGC 1 cut(s) 206
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 4 cut(s) 90, 228, 278, 605
HpaII CCGG 3 cut(s) 285, 377, 512
HphI GGTGA 1 cut(s) 44
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 1 cut(s) 334
Hpy188III TCNNGA 4 cut(s) 154, 344, 350, 412
Hpy8I GTNNAC 1 cut(s) 129
HpyAV CCTTC 2 cut(s) 144, 452
HpyCH4III ACNGT 1 cut(s) 433
HpyCH4IV ACGT 1 cut(s) 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 503, 537, 561
HpyF3I CTNAG 2 cut(s) 113, 583
HpySE526I ACGT 1 cut(s) 680
Hsp92I GRCGYC 1 cut(s) 256
Hsp92II CATG 6 cut(s) 13, 214, 323, 366, 448, 644
HspAI GCGC 1 cut(s) 206
Kzo9I GATC 3 cut(s) 12, 346, 565
Lsp1109I GCAGC 4 cut(s) 18, 542, 545, 573
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 537
MaeII ACGT 1 cut(s) 680
MaeIII GTNAC 1 cut(s) 391
MalI GATC 3 cut(s) 14, 348, 567
MboI GATC 3 cut(s) 12, 346, 565
MboII GAAGA 2 cut(s) 368, 599
MhlI GDGCHC 2 cut(s) 31, 686
MluCI AATT 5 cut(s) 170, 189, 312, 646, 658
MlyI GAGTC 2 cut(s) 237, 614
MnlI CCTC 4 cut(s) 433, 448, 496, 528
Mph1103I ATGCAT 1 cut(s) 216
MseI TTAA 3 cut(s) 18, 173, 665
MspI CCGG 3 cut(s) 285, 377, 512
MspR9I CCNGG 5 cut(s) 119, 286, 479, 513, 542
MvaI CCWGG 3 cut(s) 119, 479, 542
MvnI CGCG 2 cut(s) 206, 615
MwoI GCNNNNNNNGC 3 cut(s) 503, 537, 561
NciI CCSGG 2 cut(s) 286, 513
NdeI CATATG 2 cut(s) 233, 250
NdeII GATC 3 cut(s) 12, 346, 565
NheI GCTAGC 1 cut(s) 536
NlaIII CATG 6 cut(s) 13, 214, 323, 366, 448, 644
NlaIV GGNNCC 1 cut(s) 516
NsiI ATGCAT 1 cut(s) 216
PcsI WCGNNNNNNNCGW 1 cut(s) 600
PfeI GAWTC 2 cut(s) 90, 278
PinAI ACCGGT 1 cut(s) 376
PkrI GCNGC 4 cut(s) 8, 557, 560, 563
Ple19I CGATCG 1 cut(s) 568
PleI GAGTC 2 cut(s) 236, 613
PpsI GAGTC 2 cut(s) 236, 613
Psp6I CCWGG 3 cut(s) 117, 477, 540
PspGI CCWGG 3 cut(s) 117, 477, 540
PspN4I GGNNCC 1 cut(s) 516
PspPI GGNCC 1 cut(s) 515
PstI CTGCAG 1 cut(s) 563
PvuI CGATCG 1 cut(s) 568
SaqAI TTAA 3 cut(s) 18, 173, 665
SatI GCNGC 4 cut(s) 7, 556, 559, 562
Sau3AI GATC 3 cut(s) 12, 346, 565
Sau96I GGNCC 1 cut(s) 515
SchI GAGTC 2 cut(s) 237, 614
ScrFI CCNGG 5 cut(s) 119, 286, 479, 513, 542
SduI GDGCHC 2 cut(s) 31, 686
SetI ASST 5 cut(s) 136, 476, 538, 557, 683
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 559
SgrAI CRCCGGYG 1 cut(s) 376
Sse9I AATT 5 cut(s) 170, 189, 312, 646, 658
SspMI CTAG 1 cut(s) 537
StyD4I CCNGG 5 cut(s) 117, 284, 477, 511, 540
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 1 cut(s) 433
TaiI ACGT 1 cut(s) 683
TaqI TCGA 2 cut(s) 551, 621
TaqII GACCGA 1 cut(s) 282
TasI AATT 5 cut(s) 170, 189, 312, 646, 658
TfiI GAWTC 2 cut(s) 90, 278
Tru1I TTAA 3 cut(s) 18, 173, 665
Tru9I TTAA 3 cut(s) 18, 173, 665
TseI GCWGC 4 cut(s) 6, 555, 558, 561
TspDTI ATGAA 4 cut(s) 64, 308, 369, 629
XapI RAATTY 1 cut(s) 189
XcmI CCANNNNNNNNNTGG 1 cut(s) 305
XspI CTAG 1 cut(s) 537
Zsp2I ATGCAT 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.