RLG00000033519

RING-like zinc finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0016289
Physical Location & Seq
Forward (+)
28369967 .. 28372728
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000033519

Sequence Viewer

Length: 873 bp
ATGTGCCTGAGGTTTTCACGAGACTTCTTCTTGCTCCATCCGGTAGAGCGTCCGAAGGACGCCGTTGATCGTTGGACGGTTGTCTTGGTACTCTATTCATCGACAAACTATGCGGTTCTTAGTGACCATCTAGGTTTAAGGTTTCAAGATGAGGTTGAGCCAGCTGGCATAGGGATGATGGAGTGGCCGGATCGAGATTGGTGTGTGATGTTTGGACAGCGATCTGATCTGGTGGCTCAACGAGATCGGAGCGATGATGGTACACTACTGGAGGACAAGTTTACACCTTCAGGCCGTCTCGCAATCTGGATAGCACTTGCCAAATTAACTCTCTGCACCGAAATTCTATTTCTCATCGCGCTCATGCATCACATTATTGGAGTCATATGTTCTTGGCTTCCATATGGACGCCGTAATGACCGAGATATTGAATCAGCCAGGGTAAGAAGCCACATTCTAACCGGAATTGTTCATGTTGAGCCATCTGATTTCCATCACGATCCCGATGAAGAAACATGGTCGCAAGCACCGGTGCAAAATGTTGTAACTATGTTGCAAATGTTCTTGATGGAAGTGCTTGACAGAGTTTGGGAGGACATGGTAATAGAGGAAGGGCAAGAGCAAAGCTTCCAGGCCATTCAAACTCAAGCCATTGAGGCACTTCCGGGGCCTCTGCAATACTGCAAAGCTAGCCTGGAAATATCGAGCTGCTGCAGCGATCGGTGTGCCATTTGCTTAGAAGACTTCGTGGATGGCGAGTCTTGTCGTGTTTTCGAGTGCAAGCACATCTTTCATGCTAATTGCATTGATAATTGGTTAAAGAATGGTCTAACTTGCCCGATTTGTAGAAACTCTCTTGTGAAGATAAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-RING_2

Protein Analysis

291

Amino Acids

33.28

Weight (kDa)

4.99

Isoelectric Point (pI)

53.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RING_2 PF13639 241 - 283 3.3e-14 Ring finger domain
zf-C3HC4_2 PF13923 241 - 282 3.8e-08 Zinc finger, C3HC4 type (RING finger)
zf-RING_5 PF14634 241 - 283 9e-06 zinc-RING finger domain
zf-RING_11 PF17123 242 - 269 5.4e-09 RING-like zinc finger
zf-C3HC4 PF00097 242 - 282 1e-07 Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX PF13445 242 - 280 1.7e-06 RING-type zinc-finger
zf-rbx1 PF12678 243 - 283 5.8e-07 RING-H2 zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016289)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g20220
malus_domestica MD03G1226900.v1.1 MD11G1244100.v1.1
prunus_persica Prupe.4G182600_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0034041
rosa_laevigata RLG00000033519
rosa_multiflora Rmu_co8356837.1_g000001
rosa_roxburghii Rroxscaffold_1G00046200
rosa_rugosa Rorug05G0144300
rosa_samantha Rh5AG235300 Rh5BG236000 Rh5CG265900 Rh5DG242900
rosa_wichuraiana Rw5G021240 Rw5G021430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 359
AciI CCGC 1 cut(s) 113
AclWI GGATC 2 cut(s) 198, 494
AcoI YGGCCR 1 cut(s) 185
AcsI RAATTY 1 cut(s) 342
AcuI CTGAAG 1 cut(s) 273
AcyI GRCGYC 2 cut(s) 60, 409
AfaI GTAC 2 cut(s) 90, 262
AgeI ACCGGT 1 cut(s) 529
AgsI TTSAA 3 cut(s) 146, 431, 641
AjnI CCWGG 3 cut(s) 437, 630, 693
AluBI AGCT 4 cut(s) 164, 627, 689, 708
AluI AGCT 4 cut(s) 164, 627, 689, 708
Alw26I GTCTC 2 cut(s) 15, 302
AlwI GGATC 2 cut(s) 198, 494
AoxI GGCC 4 cut(s) 185, 292, 633, 668
ApeKI GCWGC 3 cut(s) 708, 711, 714
ApoI RAATTY 1 cut(s) 342
AsiGI ACCGGT 1 cut(s) 529
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 668
AsuC2I CCSGG 1 cut(s) 666
AsuNHI GCTAGC 1 cut(s) 689
AxyI CCTNAGG 1 cut(s) 8
BauI CACGAG 1 cut(s) 18
BbsI GAAGAC 1 cut(s) 747
BbvI GCAGC 3 cut(s) 695, 698, 726
BccI CCATC 8 cut(s) 45, 135, 172, 251, 490, 501, 562, 746
BceAI ACGGC 3 cut(s) 47, 279, 396
BcgI CGANNNNNNTGC 2 cut(s) 707, 741
BciT130I CCWGG 3 cut(s) 439, 632, 695
BcnI CCSGG 1 cut(s) 666
BcoDI GTCTC 2 cut(s) 15, 302
BfaI CTAG 2 cut(s) 131, 690
BfmI CTRYAG 1 cut(s) 712
BglI GCCNNNNNGGC 1 cut(s) 656
BisI GCNGC 3 cut(s) 709, 712, 715
BlsI GCNGC 3 cut(s) 710, 713, 716
Bme1390I CCNGG 4 cut(s) 439, 632, 666, 695
BmgT120I GGNCC 1 cut(s) 668
BmiI GGNNCC 1 cut(s) 669
BmrFI CCNGG 4 cut(s) 439, 632, 666, 695
BmsI GCATC 1 cut(s) 376
BmtI GCTAGC 1 cut(s) 693
BoxI GACNNNNGTC 1 cut(s) 80
BpiI GAAGAC 1 cut(s) 747
BpmI CTGGAG 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 630
BpuMI CCSGG 1 cut(s) 666
BsaBI GATNNNNATC 1 cut(s) 492
BsaHI GRCGYC 2 cut(s) 60, 409
BsaJI CCNNGG 2 cut(s) 438, 665
BsaWI WCCGGW 3 cut(s) 40, 461, 529
BsaXI ACNNNNNCTCC 2 cut(s) 263, 293
Bse118I RCCGGY 1 cut(s) 529
Bse1I ACTGG 1 cut(s) 273
Bse21I CCTNAGG 1 cut(s) 8
Bse8I GATNNNNATC 1 cut(s) 492
BseBI CCWGG 3 cut(s) 439, 632, 695
BseDI CCNNGG 2 cut(s) 438, 665
BseGI GGATG 3 cut(s) 37, 180, 757
BseJI GATNNNNATC 1 cut(s) 492
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 3 cut(s) 695, 698, 726
BsgI GTGCAG 1 cut(s) 319
Bsh1236I CGCG 1 cut(s) 359
Bsh1285I CGRYCG 1 cut(s) 721
BshFI GGCC 4 cut(s) 187, 294, 635, 670
BshTI ACCGGT 1 cut(s) 529
BsiEI CGRYCG 1 cut(s) 721
BsiSI CCGG 5 cut(s) 41, 188, 462, 530, 665
BsmAI GTCTC 2 cut(s) 15, 302
BsmBI CGTCTC 1 cut(s) 302
BsnI GGCC 4 cut(s) 187, 294, 635, 670
Bsp143I GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
BspACI CCGC 1 cut(s) 113
BspANI GGCC 4 cut(s) 187, 294, 635, 670
BspFNI CGCG 1 cut(s) 359
BspLI GGNNCC 1 cut(s) 669
BspMAI CTGCAG 1 cut(s) 716
BspOI GCTAGC 1 cut(s) 693
BspPI GGATC 2 cut(s) 198, 494
BsrFI RCCGGY 1 cut(s) 529
BsrI ACTGG 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 529
BssECI CCNNGG 2 cut(s) 438, 665
BssMI GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
BssNI GRCGYC 2 cut(s) 60, 409
BssSI CACGAG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 18
Bst2UI CCWGG 3 cut(s) 439, 632, 695
Bst4CI ACNGT 1 cut(s) 79
BstACI GRCGYC 2 cut(s) 60, 409
BstC8I GCNNGC 5 cut(s) 162, 166, 525, 691, 782
BstDEI CTNAG 3 cut(s) 8, 119, 736
BstF5I GGATG 3 cut(s) 37, 180, 757
BstFNI CGCG 1 cut(s) 359
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 7 cut(s) 70, 193, 224, 229, 247, 502, 721
BstMAI GTCTC 2 cut(s) 15, 302
BstMBI GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
BstMCI CGRYCG 1 cut(s) 721
BstMWI GCNNNNNNNGC 3 cut(s) 656, 690, 714
BstNI CCWGG 3 cut(s) 439, 632, 695
BstPAI GACNNNNGTC 1 cut(s) 80
BstSCI CCNGG 4 cut(s) 437, 630, 664, 693
BstSFI CTRYAG 1 cut(s) 712
BstUI CGCG 1 cut(s) 359
BstV1I GCAGC 3 cut(s) 695, 698, 726
BstV2I GAAGAC 1 cut(s) 747
Bsu36I CCTNAGG 1 cut(s) 8
BsuRI GGCC 4 cut(s) 187, 294, 635, 670
BtgZI GCGATG 2 cut(s) 267, 340
BtsCI GGATG 3 cut(s) 37, 180, 757
Cac8I GCNNGC 5 cut(s) 162, 166, 525, 691, 782
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 529
Cfr13I GGNCC 1 cut(s) 668
CseI GACGC 3 cut(s) 38, 68, 417
Csp6I GTAC 2 cut(s) 89, 261
CspAI ACCGGT 1 cut(s) 529
CviAII CATG 5 cut(s) 364, 473, 516, 598, 794
CviQI GTAC 2 cut(s) 89, 261
DdeI CTNAG 3 cut(s) 8, 119, 736
DpnI GATC 7 cut(s) 69, 192, 223, 228, 246, 501, 720
DpnII GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
EaeI YGGCCR 1 cut(s) 185
Eco57I CTGAAG 1 cut(s) 273
Eco81I CCTNAGG 1 cut(s) 8
EcoO109I RGGNCCY 1 cut(s) 668
EcoRII CCWGG 3 cut(s) 437, 630, 693
EcoT22I ATGCAT 1 cut(s) 369
Esp3I CGTCTC 1 cut(s) 302
FaeI CATG 5 cut(s) 367, 476, 519, 601, 797
FalI AAGNNNNNCTT 2 cut(s) 773, 805
FatI CATG 5 cut(s) 363, 472, 515, 597, 793
FauNDI CATATG 2 cut(s) 386, 403
Fnu4HI GCNGC 3 cut(s) 709, 712, 715
FokI GGATG 3 cut(s) 24, 187, 764
Fsp4HI GCNGC 3 cut(s) 709, 712, 715
FspBI CTAG 2 cut(s) 131, 690
GlaI GCGC 1 cut(s) 360
GluI GCNGC 3 cut(s) 709, 712, 715
GsuI CTGGAG 1 cut(s) 290
HaeIII GGCC 4 cut(s) 187, 294, 635, 670
HapII CCGG 5 cut(s) 41, 188, 462, 530, 665
HgaI GACGC 3 cut(s) 38, 68, 417
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 2 cut(s) 60, 409
Hin1II CATG 5 cut(s) 367, 476, 519, 601, 797
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 625
HinfI GANTC 3 cut(s) 381, 431, 758
HpaII CCGG 5 cut(s) 41, 188, 462, 530, 665
Hpy166II GTNNAC 2 cut(s) 263, 282
Hpy188I TCNGA 4 cut(s) 54, 226, 249, 487
Hpy188III TCNNGA 7 cut(s) 18, 146, 194, 307, 497, 503, 565
Hpy8I GTNNAC 2 cut(s) 263, 282
HpyAV CCTTC 3 cut(s) 49, 297, 605
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 9 cut(s) 336, 367, 535, 556, 676, 684, 714, 780, 804
HpyF10VI GCNNNNNNNGC 3 cut(s) 656, 690, 714
HpyF3I CTNAG 3 cut(s) 8, 119, 736
Hsp92I GRCGYC 2 cut(s) 60, 409
Hsp92II CATG 5 cut(s) 367, 476, 519, 601, 797
HspAI GCGC 1 cut(s) 359
Kzo9I GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
LmnI GCTCC 2 cut(s) 39, 249
Lsp1109I GCAGC 3 cut(s) 695, 698, 726
LweI GCATC 1 cut(s) 376
MaeI CTAG 2 cut(s) 131, 690
MaeIII GTNAC 2 cut(s) 122, 544
MalI GATC 7 cut(s) 69, 192, 223, 228, 246, 501, 720
MboI GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
MboII GAAGA 3 cut(s) 19, 521, 752
MluCI AATT 5 cut(s) 323, 342, 465, 799, 811
MlyI GAGTC 2 cut(s) 390, 767
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 7 cut(s) 3, 145, 265, 586, 601, 649, 681
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 3 cut(s) 137, 326, 818
MslI CAYNNNNRTG 1 cut(s) 173
MspA1I CMGCKG 1 cut(s) 164
MspI CCGG 5 cut(s) 41, 188, 462, 530, 665
MspR9I CCNGG 4 cut(s) 439, 632, 666, 695
MvaI CCWGG 3 cut(s) 439, 632, 695
MvnI CGCG 1 cut(s) 359
MwoI GCNNNNNNNGC 3 cut(s) 656, 690, 714
NciI CCSGG 1 cut(s) 666
NdeI CATATG 2 cut(s) 386, 403
NdeII GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
NheI GCTAGC 1 cut(s) 689
NlaIII CATG 5 cut(s) 367, 476, 519, 601, 797
NlaIV GGNNCC 1 cut(s) 669
NmuCI GTSAC 1 cut(s) 122
NsiI ATGCAT 1 cut(s) 369
PcsI WCGNNNNNNNCGW 1 cut(s) 753
PfeI GAWTC 1 cut(s) 431
PinAI ACCGGT 1 cut(s) 529
PkrI GCNGC 3 cut(s) 710, 713, 716
Ple19I CGATCG 1 cut(s) 721
PleI GAGTC 2 cut(s) 389, 766
PpsI GAGTC 2 cut(s) 389, 766
PshAI GACNNNNGTC 1 cut(s) 80
Psp6I CCWGG 3 cut(s) 437, 630, 693
PspGI CCWGG 3 cut(s) 437, 630, 693
PspN4I GGNNCC 1 cut(s) 669
PspPI GGNCC 1 cut(s) 668
PstI CTGCAG 1 cut(s) 716
PvuI CGATCG 1 cut(s) 721
PvuII CAGCTG 1 cut(s) 164
RsaI GTAC 2 cut(s) 90, 262
RsaNI GTAC 2 cut(s) 89, 261
RseI CAYNNNNRTG 1 cut(s) 173
SaqAI TTAA 3 cut(s) 137, 326, 818
SatI GCNGC 3 cut(s) 709, 712, 715
Sau3AI GATC 7 cut(s) 67, 190, 221, 226, 244, 499, 718
Sau96I GGNCC 1 cut(s) 668
SchI GAGTC 2 cut(s) 390, 767
ScrFI CCNGG 4 cut(s) 439, 632, 666, 695
SetI ASST 9 cut(s) 14, 136, 143, 156, 166, 289, 629, 691, 710
SfaNI GCATC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 712
SgrAI CRCCGGYG 1 cut(s) 529
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 1 cut(s) 645
SmoI CTYRAG 1 cut(s) 645
Sse9I AATT 5 cut(s) 323, 342, 465, 799, 811
SsiI CCGC 1 cut(s) 113
SspMI CTAG 2 cut(s) 131, 690
StyD4I CCNGG 4 cut(s) 437, 630, 664, 693
TaaI ACNGT 1 cut(s) 79
TaqI TCGA 4 cut(s) 101, 193, 704, 774
TaqII GACCGA 1 cut(s) 435
TasI AATT 5 cut(s) 323, 342, 465, 799, 811
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 3 cut(s) 137, 326, 818
Tru9I TTAA 3 cut(s) 137, 326, 818
TseFI GTSAC 1 cut(s) 122
TseI GCWGC 3 cut(s) 708, 711, 714
Tsp45I GTSAC 1 cut(s) 122
TspDTI ATGAA 4 cut(s) 87, 461, 522, 782
XapI RAATTY 1 cut(s) 342
XspI CTAG 2 cut(s) 131, 690
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.