FvH4_3g20480

May be involved in modulation of pathogen defense and leaf cell death

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
13508860 .. 13517888
9029 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g20480.t4

Sequence Viewer

Length: 1659 bp
ATGGCCGAAGATACACAAGAAATGCGATCTTTGGCCTTGACACCAACATGGTCTGTTGCTACTGTGTTGACAATTTTCGTGGCTGTTTCTCTGCTTGTGGAGCGCGGCATTCATCGGTTAAGCCATTGGTTGCGGAAAACTAATCGTAAGCCCTTGCTAGAAGCTGTGGAGAAAATGAAGGAAGAATTGATGCTGCTTGGATTTATCTCTCTTCTTTTGACGGCTACCTCAAGCACGATAGCCAATATTTGCATTCCGTCAAAGTTCTATGACAGCAAGTTCTCTCCATGTACAAGAAAAGAGATTGACGAAGAACATGAAACCAATACATCCAAGGAACGCAAACTGCTGATGTTTACTGTTCTGCCTCATACCTTTAGGAGAATGTTAAATAGCTTGAATGCGAATACCTGCAAAGAGGGTTATGAGCCATTCGTTTCATATCAAGGTCTTGAGCAGTTGCACCGCTTCATCTTTGTCATGGCAATAACACACGTATCCTACAGCTGCTTAACAATGTTGCTTGCAATAGTGAAGATTCACGGTTGGAGAGCATGGGAGGATGAGGCTCACATGGACAGGCATGATTCATTGACTGAAATCACTCGGCAGATGACAATGCGAAGGCAGTCTACCTTTGTAAATACAACAAATCCACTGGCCAGGAATAGTTTTTTAATCTGGGTGATATGCTTCTTCAGACAATTTGGGCGTTCAGTCGTTCGGGCTGACTACTTAACACTCCGCAAGGGCTTCATCATGAATCACAACCTTACACCAAAGTATGATTTTCACAGCTATATGATTCGATCTATGGAAGAGGAATTCCAAAGAATAGTTGGTGTGAGTGCTCCACTCTGGGGATTTGTTGTTGCTTTCATGCTGTTCAATGTACAAGGGTCTAATCTTTATTTCTGGATTGCAATCATTCCAATTACTCTAGTCCTTCTTGTGGGAATGAAGTTGCAGCATGTTATTGCAACCCTTGCTCTGGAGAATGCTGGTATAACCGGATCCTATCCAGGAGCAAAACTGAGGCCTCGAGATGATCTTTTCTGGTTCAAGAAGCCAGAACTTCTGTTGTCCTTGATCCATTTTTGTTTATTCCAGAATGCGTTTGAATTGGCTTCATTCTTTTGGTTTTGGTGGCAATTTGGGTATAGTTCCTGCTTCATCCGGAATCATACACTTGTATATTTAAGGCTGATTTTAGGGTTTGCTGGGCAATTCCTATGCAGCTACAGCACCTTGCCACTATATGCTTTGGTTACTCAGATGGGAACAAATTATAAAGCTGCATTAATCCCACAAAGGATAAGAGAAACCATACATGGGTGGAAAAAAGCAGCTAGGAGGAAAAGAAGGCTGGGGATATACAATGATGATTCAACCATACACACATGTACAGACACAAGCACAGTAGTGTCGGTTGAGGAAGATGATCGTGAATTTCTGGATGGCCCAGCCACTGATGCCAACGCGCTTGATGGAGTTGAGTTGCAACCTGTTTCTAGTGTGATGACCAGTCCATTCCCAGTTGCTAACGAAACATCGAGTAGGGTAGGCACACCCCTTCTTCGGCCATCAGCGTCTGTTTCCTCATCAGTTTCATTGAATATTCAACCAGAAACTGTTCCAAGATCTGCGTCAATGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

553

Amino Acids

63.25

Weight (kDa)

9.01

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mlo PF03094 9 - 139 2e-38 Mlo family
Mlo PF03094 141 - 428 6.1e-103 Mlo family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1290
Acc36I ACCTGC 1 cut(s) 419
AccI GTMKAC 1 cut(s) 632
AccII CGCG 2 cut(s) 105, 1481
AccIII TCCGGA 1 cut(s) 1176
AciI CCGC 4 cut(s) 105, 133, 466, 745
AclWI GGATC 3 cut(s) 1008, 1021, 1084
AcoI YGGCCR 3 cut(s) 3, 660, 1580
AcsI RAATTY 2 cut(s) 824, 1448
AcuI CTGAAG 1 cut(s) 682
AfaI GTAC 3 cut(s) 292, 894, 1405
AfiI CCNNNNNNNGG 5 cut(s) 860, 952, 991, 1332, 1578
AflIII ACRYGT 2 cut(s) 493, 1400
AgsI TTSAA 7 cut(s) 400, 889, 1063, 1121, 1389, 1615, 1622
AjnI CCWGG 2 cut(s) 662, 1021
AleI CACNNNNGTG 1 cut(s) 1421
AluBI AGCT 7 cut(s) 164, 396, 507, 798, 1239, 1295, 1349
AluI AGCT 7 cut(s) 164, 396, 507, 798, 1239, 1295, 1349
Alw21I GWGCWC 1 cut(s) 853
AlwI GGATC 3 cut(s) 1008, 1021, 1084
AlwNI CAGNNNCTG 3 cut(s) 1469, 1592, 1631
Ama87I CYCGRG 1 cut(s) 1041
Aor13HI TCCGGA 1 cut(s) 1176
AoxI GGCC 6 cut(s) 3, 33, 660, 1037, 1459, 1580
ApeKI GCWGC 6 cut(s) 193, 507, 967, 1236, 1295, 1346
ApoI RAATTY 2 cut(s) 824, 1448
AseI ATTAAT 1 cut(s) 1301
Asp700I GAANNNNTTC 1 cut(s) 1632
AspLEI GCGC 2 cut(s) 105, 1483
AspS9I GGNCC 1 cut(s) 1460
AsuHPI GGTGA 1 cut(s) 697
AvaI CYCGRG 1 cut(s) 1041
BaeI ACNNNNGTAYC 2 cut(s) 480, 513
BalI TGGCCA 1 cut(s) 662
BamHI GGATCC 1 cut(s) 1013
BarI GAAGNNNNNNTAC 2 cut(s) 616, 648
Bbv12I GWGCWC 1 cut(s) 853
BbvI GCAGC 6 cut(s) 180, 494, 979, 1248, 1282, 1358
BccI CCATC 4 cut(s) 1270, 1451, 1481, 1591
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 2 cut(s) 664, 1023
BciVI GTATCC 1 cut(s) 508
BfaI CTAG 4 cut(s) 158, 941, 1350, 1512
BfmI CTRYAG 2 cut(s) 502, 1240
BfuAI ACCTGC 1 cut(s) 419
BfuI GTATCC 1 cut(s) 508
BglII AGATCT 1 cut(s) 1640
BisI GCNGC 7 cut(s) 106, 194, 508, 968, 1237, 1296, 1347
BlsI GCNGC 7 cut(s) 107, 195, 509, 969, 1238, 1297, 1348
Bme1390I CCNGG 2 cut(s) 664, 1023
BmeT110I CYCGRG 1 cut(s) 1041
BmgT120I GGNCC 1 cut(s) 1460
BmiI GGNNCC 1 cut(s) 1015
BmrFI CCNGG 2 cut(s) 664, 1023
BmrI ACTGGG 1 cut(s) 1529
BmsI GCATC 2 cut(s) 180, 1462
BmuI ACTGGG 1 cut(s) 1529
BpmI CTGGAG 1 cut(s) 1013
BpuEI CTTGAG 2 cut(s) 214, 473
BsaAI YACGTR 1 cut(s) 496
BsaBI GATNNNNATC 1 cut(s) 923
BsaJI CCNNGG 1 cut(s) 333
BsaWI WCCGGW 2 cut(s) 1010, 1176
Bsc4I CCNNNNNNNGG 5 cut(s) 860, 952, 991, 1332, 1578
Bse1I ACTGG 3 cut(s) 663, 1524, 1535
Bse8I GATNNNNATC 1 cut(s) 923
BseAI TCCGGA 1 cut(s) 1176
BseBI CCWGG 2 cut(s) 664, 1023
BseDI CCNNGG 1 cut(s) 333
BseGI GGATG 4 cut(s) 329, 568, 1173, 1462
BseJI GATNNNNATC 1 cut(s) 923
BseLI CCNNNNNNNGG 5 cut(s) 860, 952, 991, 1332, 1578
BseMII CTCAG 2 cut(s) 1025, 1286
BseNI ACTGG 3 cut(s) 663, 1524, 1535
BseXI GCAGC 6 cut(s) 180, 494, 979, 1248, 1282, 1358
BseYI CCCAGC 3 cut(s) 1220, 1366, 1462
Bsh1236I CGCG 2 cut(s) 105, 1481
BshFI GGCC 6 cut(s) 5, 35, 662, 1039, 1461, 1582
BsiHKAI GWGCWC 1 cut(s) 853
BsiHKCI CYCGRG 1 cut(s) 1041
BsiSI CCGG 2 cut(s) 1011, 1177
BslI CCNNNNNNNGG 5 cut(s) 860, 952, 991, 1332, 1578
BsmI GAATGC 5 cut(s) 108, 252, 406, 1003, 1117
BsnI GGCC 6 cut(s) 5, 35, 662, 1039, 1461, 1582
BsoBI CYCGRG 1 cut(s) 1041
Bsp1286I GDGCHC 1 cut(s) 853
Bsp13I TCCGGA 1 cut(s) 1176
Bsp1407I TGTACA 3 cut(s) 290, 892, 1403
Bsp143I GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
BspACI CCGC 4 cut(s) 105, 133, 466, 745
BspANI GGCC 6 cut(s) 5, 35, 662, 1039, 1461, 1582
BspCNI CTCAG 2 cut(s) 1026, 1285
BspEI TCCGGA 1 cut(s) 1176
BspFNI CGCG 2 cut(s) 105, 1481
BspHI TCATGA 1 cut(s) 759
BspLI GGNNCC 1 cut(s) 1015
BspMI ACCTGC 1 cut(s) 419
BspPI GGATC 3 cut(s) 1008, 1021, 1084
BsrGI TGTACA 3 cut(s) 290, 892, 1403
BsrI ACTGG 3 cut(s) 663, 1524, 1535
BssECI CCNNGG 1 cut(s) 333
BssMI GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
BssT1I CCWWGG 1 cut(s) 333
Bst2UI CCWGG 2 cut(s) 664, 1023
Bst4CI ACNGT 5 cut(s) 64, 361, 545, 1420, 1633
Bst6I CTCTTC 2 cut(s) 216, 813
BstAPI GCANNNNNTGC 1 cut(s) 986
BstAUI TGTACA 3 cut(s) 290, 892, 1403
BstBAI YACGTR 1 cut(s) 496
BstC8I GCNNGC 1 cut(s) 525
BstDEI CTNAG 2 cut(s) 1034, 1272
BstF5I GGATG 4 cut(s) 329, 568, 1173, 1462
BstFNI CGCG 2 cut(s) 105, 1481
BstHHI GCGC 2 cut(s) 105, 1483
BstKTI GATC 7 cut(s) 29, 812, 1016, 1051, 1092, 1444, 1643
BstMBI GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
BstMWI GCNNNNNNNGC 4 cut(s) 100, 986, 1242, 1472
BstNI CCWGG 2 cut(s) 664, 1023
BstNSI RCATGY 2 cut(s) 974, 1404
BstSCI CCNGG 2 cut(s) 662, 1021
BstSFI CTRYAG 2 cut(s) 502, 1240
BstUI CGCG 2 cut(s) 105, 1481
BstV1I GCAGC 6 cut(s) 180, 494, 979, 1248, 1282, 1358
BstX2I RGATCY 2 cut(s) 1013, 1640
BstYI RGATCY 2 cut(s) 1013, 1640
BsuI GTATCC 1 cut(s) 508
BsuRI GGCC 6 cut(s) 5, 35, 662, 1039, 1461, 1582
BtsCI GGATG 4 cut(s) 329, 568, 1173, 1462
BtsIMutI CAGTG 2 cut(s) 656, 1467
BveI ACCTGC 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 525
CaiI CAGNNNCTG 3 cut(s) 1469, 1592, 1631
CciI TCATGA 1 cut(s) 759
CfoI GCGC 2 cut(s) 105, 1483
Cfr13I GGNCC 1 cut(s) 1460
CseI GACGC 2 cut(s) 1578, 1635
Csp6I GTAC 3 cut(s) 291, 893, 1404
CspCI CAANNNNNGTGG 2 cut(s) 60, 95
CviQI GTAC 3 cut(s) 291, 893, 1404
DdeI CTNAG 2 cut(s) 1034, 1272
DpnI GATC 7 cut(s) 28, 811, 1015, 1050, 1091, 1443, 1642
DpnII GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
EaeI YGGCCR 3 cut(s) 3, 660, 1580
Eam1104I CTCTTC 2 cut(s) 216, 813
EarI CTCTTC 2 cut(s) 216, 813
Eco130I CCWWGG 1 cut(s) 333
Eco147I AGGCCT 1 cut(s) 1039
Eco57I CTGAAG 1 cut(s) 682
Eco88I CYCGRG 1 cut(s) 1041
EcoRI GAATTC 1 cut(s) 824
EcoRII CCWGG 2 cut(s) 662, 1021
EcoT14I CCWWGG 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 333
FblI GTMKAC 1 cut(s) 632
Fnu4HI GCNGC 7 cut(s) 106, 194, 508, 968, 1237, 1296, 1347
FokI GGATG 4 cut(s) 316, 575, 1160, 1469
Fsp4HI GCNGC 7 cut(s) 106, 194, 508, 968, 1237, 1296, 1347
FspBI CTAG 4 cut(s) 158, 941, 1350, 1512
GlaI GCGC 2 cut(s) 104, 1482
GluI GCNGC 7 cut(s) 106, 194, 508, 968, 1237, 1296, 1347
GsaI CCCAGC 3 cut(s) 1224, 1370, 1466
GsuI CTGGAG 1 cut(s) 1013
HaeIII GGCC 6 cut(s) 5, 35, 662, 1039, 1461, 1582
HapII CCGG 2 cut(s) 1011, 1177
HgaI GACGC 2 cut(s) 1578, 1635
HhaI GCGC 2 cut(s) 105, 1483
Hin6I GCGC 2 cut(s) 103, 1481
HinP1I GCGC 2 cut(s) 103, 1481
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HinfI GANTC 6 cut(s) 538, 587, 763, 805, 1180, 1385
HpaII CCGG 2 cut(s) 1011, 1177
HphI GGTGA 1 cut(s) 697
Hpy166II GTNNAC 3 cut(s) 69, 357, 633
Hpy188I TCNGA 2 cut(s) 701, 1275
Hpy8I GTNNAC 3 cut(s) 69, 357, 633
HpyAV CCTTC 5 cut(s) 172, 618, 956, 1356, 1583
HpyCH4III ACNGT 5 cut(s) 64, 361, 545, 1420, 1633
HpyCH4IV ACGT 1 cut(s) 495
HpyF10VI GCNNNNNNNGC 4 cut(s) 100, 986, 1242, 1472
HpyF3I CTNAG 2 cut(s) 1034, 1272
HpySE526I ACGT 1 cut(s) 495
HspAI GCGC 2 cut(s) 103, 1481
Kpn2I TCCGGA 1 cut(s) 1176
Kzo9I GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
LmnI GCTCC 3 cut(s) 100, 856, 1025
Lsp1109I GCAGC 6 cut(s) 180, 494, 979, 1248, 1282, 1358
LweI GCATC 2 cut(s) 180, 1462
MaeI CTAG 4 cut(s) 158, 941, 1350, 1512
MaeII ACGT 1 cut(s) 495
MaeIII GTNAC 1 cut(s) 1267
MalI GATC 7 cut(s) 28, 811, 1015, 1050, 1091, 1443, 1642
MboI GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
MboII GAAGA 9 cut(s) 20, 194, 203, 323, 547, 688, 830, 1448, 1568
MflI RGATCY 2 cut(s) 1013, 1640
MhlI GDGCHC 1 cut(s) 853
MlsI TGGCCA 1 cut(s) 662
MluNI TGGCCA 1 cut(s) 662
MmeI TCCRAC 1 cut(s) 527
Mox20I TGGCCA 1 cut(s) 662
MroI TCCGGA 1 cut(s) 1176
MroXI GAANNNNTTC 1 cut(s) 1632
MscI TGGCCA 1 cut(s) 662
MseI TTAA 7 cut(s) 119, 389, 512, 677, 737, 1199, 1301
MslI CAYNNNNRTG 2 cut(s) 46, 1421
Msp20I TGGCCA 1 cut(s) 662
MspA1I CMGCKG 1 cut(s) 507
MspI CCGG 2 cut(s) 1011, 1177
MspR9I CCNGG 2 cut(s) 664, 1023
Mva1269I GAATGC 5 cut(s) 108, 252, 406, 1003, 1117
MvaI CCWGG 2 cut(s) 664, 1023
MvnI CGCG 2 cut(s) 105, 1481
MwoI GCNNNNNNNGC 4 cut(s) 100, 986, 1242, 1472
NdeII GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
NlaIV GGNNCC 1 cut(s) 1015
NmeAIII GCCGAG 1 cut(s) 586
NspI RCATGY 2 cut(s) 974, 1404
OliI CACNNNNGTG 1 cut(s) 1421
PaeR7I CTCGAG 1 cut(s) 1041
PagI TCATGA 1 cut(s) 759
PceI AGGCCT 1 cut(s) 1039
PciI ACATGT 1 cut(s) 1400
PctI GAATGC 5 cut(s) 108, 252, 406, 1003, 1117
PdmI GAANNNNTTC 1 cut(s) 1632
PfeI GAWTC 6 cut(s) 538, 587, 763, 805, 1180, 1385
PfoI TCCNGGA 1 cut(s) 1021
PkrI GCNGC 7 cut(s) 107, 195, 509, 969, 1238, 1297, 1348
Ppu21I YACGTR 1 cut(s) 496
PscI ACATGT 1 cut(s) 1400
PshBI ATTAAT 1 cut(s) 1301
PsiI TTATAA 1 cut(s) 1290
Psp6I CCWGG 2 cut(s) 662, 1021
PspFI CCCAGC 3 cut(s) 1220, 1366, 1462
PspGI CCWGG 2 cut(s) 662, 1021
PspN4I GGNNCC 1 cut(s) 1015
PspPI GGNCC 1 cut(s) 1460
PstNI CAGNNNCTG 3 cut(s) 1469, 1592, 1631
PsuI RGATCY 2 cut(s) 1013, 1640
PvuII CAGCTG 1 cut(s) 507
RsaI GTAC 3 cut(s) 292, 894, 1405
RsaNI GTAC 3 cut(s) 291, 893, 1404
RseI CAYNNNNRTG 2 cut(s) 46, 1421
SaqAI TTAA 7 cut(s) 119, 389, 512, 677, 737, 1199, 1301
SatI GCNGC 7 cut(s) 106, 194, 508, 968, 1237, 1296, 1347
Sau3AI GATC 7 cut(s) 26, 809, 1013, 1048, 1089, 1441, 1640
Sau96I GGNCC 1 cut(s) 1460
ScrFI CCNGG 2 cut(s) 664, 1023
SduI GDGCHC 1 cut(s) 853
SfaNI GCATC 2 cut(s) 180, 1462
SfcI CTRYAG 2 cut(s) 502, 1240
Sfr274I CTCGAG 1 cut(s) 1041
SlaI CTCGAG 1 cut(s) 1041
SmiMI CAYNNNNRTG 2 cut(s) 46, 1421
SmlI CTYRAG 3 cut(s) 229, 452, 1041
SmoI CTYRAG 3 cut(s) 229, 452, 1041
SseBI AGGCCT 1 cut(s) 1039
SsiI CCGC 4 cut(s) 105, 133, 466, 745
SspI AATATT 2 cut(s) 247, 1618
SspMI CTAG 4 cut(s) 158, 941, 1350, 1512
StuI AGGCCT 1 cut(s) 1039
StyD4I CCNGG 2 cut(s) 662, 1021
StyI CCWWGG 1 cut(s) 333
TaaI ACNGT 5 cut(s) 64, 361, 545, 1420, 1633
TaiI ACGT 1 cut(s) 498
TaqI TCGA 3 cut(s) 808, 1042, 1553
TatI WGTACW 3 cut(s) 290, 892, 1403
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 6 cut(s) 538, 587, 763, 805, 1180, 1385
Tru1I TTAA 7 cut(s) 119, 389, 512, 677, 737, 1199, 1301
Tru9I TTAA 7 cut(s) 119, 389, 512, 677, 737, 1199, 1301
TscAI CASTG 2 cut(s) 663, 1474
TseI GCWGC 6 cut(s) 193, 507, 967, 1236, 1295, 1346
TspGWI ACGGA 1 cut(s) 246
TspRI CASTG 2 cut(s) 663, 1474
VspI ATTAAT 1 cut(s) 1301
XapI RAATTY 2 cut(s) 824, 1448
XceI RCATGY 2 cut(s) 974, 1404
XcmI CCANNNNNNNNNTGG 1 cut(s) 836
XhoI CTCGAG 1 cut(s) 1041
XmiI GTMKAC 1 cut(s) 632
XmnI GAANNNNTTC 1 cut(s) 1632
XspI CTAG 4 cut(s) 158, 941, 1350, 1512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.