Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008350

Physical Location & Seq

Genomic Coordinates Reverse (-)

13495843 .. 13497066

Gene Structure 1224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0145400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGGCCACTACTACTTCACTTTCCAAAGTACTCCTCCCAATCTTCGTCATAATCCTCGTCTCCGCACTCATTCCTCAAGCTCATTCGCAATCCGAGAGTGATGAATGCGAGTCTGAAACTACCAACTCCTGCCACGACAAGGCAGGAGCAGTGCCACTCAAAATCATAGCCATTGCCTCAATCCTGGTCACCAGCATGATCGGTGTGTCCTTGCCACTCGTCACTCGCACCATACCTGCCTTGCATCCCGATCGAGACATATTCGTGGTCGTCAAGTGCTTTGCCGGTGGCATTATTCTTGGCACGGGGTTCATGCACGTTTTGCCAGACTCTTTTGACATGTTGTCCTCGAATTGTTTGGATGAGAAGCCGTGGCACAAGTTCCCTTTCACTGGATTTTTTGCTATGTTGTCCGCTATTGTGACTATGATGGTGGACTCCATGGCTACTAGCATATACAGCAGGAGATCCAGAGCCGGAGTTAACCCCGATACTACTGGTGTTGCCGCCATTGAGGGAGATCAAGAGATGGCTGTGGCGGGTGGCGGACATGGACATTTTCATTCACATGATCATCAAGTCAAAGGAGGAAGCGAGCCACAGCTGTCACGCTATCGCGTTGTTGCCATGGTATGTAAGAAGGCAATAATGGTGTTCTTCTTCTCAGCAACAACCCCATTTGGAATTGCACTGGGAATGGCCATTTCAAAAATGTACATAGAAAACAGTCCAAGTGCATTAGTGACAGTAGGACTGCTGAATGCTTCTTCAGCTGGGCTCCTCATCTACATGGCTTTGGTTGATCTTCTCTCTGCTGACTTCATGGGTCCAAAGTTGCAACGCAGCATCAAGCTCCAGATCAAGTCTTACATGGCGGTTCTTTTGGGTGCCGGTGGCATGTCTCTGTTGGCAAAATGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

307

Amino Acids

32.73

Weight (kDa)

7.14

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Zip	PF02535	52 - 199	1.6e-29	ZIP Zinc transporter
Zip	PF02535	212 - 304	5.3e-24	ZIP Zinc transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26700 AT1G26700 AT5G53760 AT5G53760
fragaria_vesca	FvH4_3g20480 FvH4_3g20480 FvH4_3g20480 FvH4_3g20480
malus_domestica	MD00G1089600.v1.1 MD03G1224600.v1.1
prunus_persica	Prupe.4G184500_v2.0.a1 Prupe.4G184500_v2.0.a1
pyrus_communis	pycom03g17290 pycom11g21480
rosa_chinensis	RchiOBHm_Chr5g0034381
rosa_laevigata	RLG00000033541
rosa_multiflora	Rmu_sc0000062.1_g000018
rosa_roxburghii	Rroxscaffold_1G00045900
rosa_rugosa	Rorug05G0145400 Rorug05G0145500
rosa_samantha	Rh5AG237100 Rh5DG245100
rosa_wichuraiana	Rw5G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	244
AccB1I	GGYRCC	1 cut(s)	887
AccII	CGCG	1 cut(s)	618
AciI	CCGC	6 cut(s)	63, 414, 507, 539, 546, 875
AclWI	GGATC	1 cut(s)	462
AcoI	YGGCCR	2 cut(s)	3, 699
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	2 cut(s)	30, 716
AfiI	CCNNNNNNNGG	2 cut(s)	139, 392
AflIII	ACRYGT	1 cut(s)	339
AgsI	TTSAA	1 cut(s)	708
AhdI	GACNNNNNGTC	1 cut(s)	343
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	4 cut(s)	80, 604, 773, 853
AluI	AGCT	4 cut(s)	80, 604, 773, 853
Alw26I	GTCTC	3 cut(s)	64, 249, 906
AlwI	GGATC	1 cut(s)	462
AoxI	GGCC	2 cut(s)	3, 699
ApeKI	GCWGC	1 cut(s)	843
AspS9I	GGNCC	1 cut(s)	827
AsuHPI	GGTGA	1 cut(s)	181
AvaII	GGWCC	1 cut(s)	827
BalI	TGGCCA	2 cut(s)	5, 701
BanI	GGYRCC	1 cut(s)	887
BanII	GRGCYC	1 cut(s)	780
BbvI	GCAGC	1 cut(s)	855
BccI	CCATC	2 cut(s)	424, 523
BceAI	ACGGC	1 cut(s)	355
BcgI	CGANNNNNNTGC	2 cut(s)	233, 267
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	1 cut(s)	571
BcoDI	GTCTC	3 cut(s)	64, 249, 906
BfaI	CTAG	1 cut(s)	450
BfuAI	ACCTGC	1 cut(s)	244
BisI	GCNGC	2 cut(s)	507, 844
BlsI	GCNGC	2 cut(s)	508, 845
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	827
BmeRI	GACNNNNNGTC	1 cut(s)	343
BmgT120I	GGNCC	1 cut(s)	827
BmiI	GGNNCC	3 cut(s)	779, 828, 889
BmrFI	CCNGG	1 cut(s)	185
BmrI	ACTGGG	1 cut(s)	701
BmsI	GCATC	2 cut(s)	253, 855
BmuI	ACTGGG	1 cut(s)	701
BpmI	CTGGAG	1 cut(s)	839
BpuEI	CTTGAG	1 cut(s)	60
BsaJI	CCNNGG	3 cut(s)	371, 441, 627
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 392
Bse118I	RCCGGY	2 cut(s)	284, 890
Bse1I	ACTGG	3 cut(s)	397, 502, 696
Bse3DI	GCAATG	1 cut(s)	171
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	3 cut(s)	371, 441, 627
BseGI	GGATG	2 cut(s)	244, 367
BseLI	CCNNNNNNNGG	2 cut(s)	139, 392
BseMI	GCAATG	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	3 cut(s)	397, 502, 696
BseRI	GAGGAG	2 cut(s)	23, 770
BseXI	GCAGC	1 cut(s)	855
BseYI	CCCAGC	1 cut(s)	773
Bsh1236I	CGCG	1 cut(s)	618
Bsh1285I	CGRYCG	1 cut(s)	253
BshFI	GGCC	2 cut(s)	5, 701
BshNI	GGYRCC	1 cut(s)	887
BsiEI	CGRYCG	1 cut(s)	253
BsiSI	CCGG	3 cut(s)	285, 477, 891
BslI	CCNNNNNNNGG	2 cut(s)	139, 392
BsmAI	GTCTC	3 cut(s)	64, 249, 906
BsmBI	CGTCTC	1 cut(s)	64
BsmI	GAATGC	2 cut(s)	110, 766
BsnI	GGCC	2 cut(s)	5, 701
Bsp1286I	GDGCHC	1 cut(s)	780
Bsp1407I	TGTACA	1 cut(s)	714
Bsp143I	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
Bsp19I	CCATGG	2 cut(s)	441, 627
BspACI	CCGC	6 cut(s)	63, 414, 507, 539, 546, 875
BspANI	GGCC	2 cut(s)	5, 701
BspCNI	CTCAG	1 cut(s)	677
BspFNI	CGCG	1 cut(s)	618
BspLI	GGNNCC	3 cut(s)	779, 828, 889
BspMI	ACCTGC	1 cut(s)	244
BspPI	GGATC	1 cut(s)	462
BspT107I	GGYRCC	1 cut(s)	887
BsrDI	GCAATG	1 cut(s)	171
BsrFI	RCCGGY	2 cut(s)	284, 890
BsrGI	TGTACA	1 cut(s)	714
BsrI	ACTGG	3 cut(s)	397, 502, 696
BssAI	RCCGGY	2 cut(s)	284, 890
BssECI	CCNNGG	3 cut(s)	371, 441, 627
BssMI	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
BssT1I	CCWWGG	2 cut(s)	441, 627
Bst2UI	CCWGG	1 cut(s)	185
Bst4CI	ACNGT	2 cut(s)	728, 748
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstAUI	TGTACA	1 cut(s)	714
BstC8I	GCNNGC	1 cut(s)	596
BstDEI	CTNAG	1 cut(s)	664
BstDSI	CCRYGG	3 cut(s)	371, 441, 627
BstEII	GGTNACC	1 cut(s)	187
BstF5I	GGATG	2 cut(s)	244, 367
BstFNI	CGCG	1 cut(s)	618
BstKTI	GATC	7 cut(s)	201, 253, 470, 523, 574, 805, 861
BstMAI	GTCTC	3 cut(s)	64, 249, 906
BstMBI	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
BstMCI	CGRYCG	1 cut(s)	253
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 459, 770, 917
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	2 cut(s)	343, 901
BstPI	GGTNACC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	183
BstUI	CGCG	1 cut(s)	618
BstV1I	GCAGC	1 cut(s)	855
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	5, 701
BtgI	CCRYGG	3 cut(s)	371, 441, 627
BtsCI	GGATG	2 cut(s)	244, 367
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	3 cut(s)	156, 390, 689
BveI	ACCTGC	1 cut(s)	244
Cac8I	GCNNGC	1 cut(s)	596
Cfr10I	RCCGGY	2 cut(s)	284, 890
Cfr13I	GGNCC	1 cut(s)	827
Csp6I	GTAC	2 cut(s)	29, 715
CviQI	GTAC	2 cut(s)	29, 715
DdeI	CTNAG	1 cut(s)	664
DpnI	GATC	7 cut(s)	200, 252, 469, 522, 573, 804, 860
DpnII	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
DriI	GACNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	2 cut(s)	3, 699
Eam1105I	GACNNNNNGTC	1 cut(s)	343
EciI	GGCGGA	1 cut(s)	561
Eco130I	CCWWGG	2 cut(s)	441, 627
Eco24I	GRGCYC	1 cut(s)	780
Eco47I	GGWCC	1 cut(s)	827
Eco57I	CTGAAG	1 cut(s)	753
Eco91I	GGTNACC	1 cut(s)	187
EcoO65I	GGTNACC	1 cut(s)	187
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	2 cut(s)	441, 627
EcoT38I	GRGCYC	1 cut(s)	780
ErhI	CCWWGG	2 cut(s)	441, 627
Esp3I	CGTCTC	1 cut(s)	64
FauI	CCCGC	1 cut(s)	532
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	2 cut(s)	507, 844
FokI	GGATG	2 cut(s)	231, 374
FriOI	GRGCYC	1 cut(s)	780
Fsp4HI	GCNGC	2 cut(s)	507, 844
FspBI	CTAG	1 cut(s)	450
GluI	GCNGC	2 cut(s)	507, 844
GsaI	CCCAGC	1 cut(s)	777
GsuI	CTGGAG	1 cut(s)	839
HaeIII	GGCC	2 cut(s)	5, 701
HapII	CCGG	3 cut(s)	285, 477, 891
HincII	GTYRAC	1 cut(s)	484
HindII	GTYRAC	1 cut(s)	484
HinfI	GANTC	3 cut(s)	110, 329, 437
HpaI	GTTAAC	1 cut(s)	484
HpaII	CCGG	3 cut(s)	285, 477, 891
HphI	GGTGA	1 cut(s)	181
Hpy166II	GTNNAC	2 cut(s)	436, 484
Hpy188I	TCNGA	2 cut(s)	94, 115
Hpy188III	TCNNGA	5 cut(s)	248, 254, 471, 524, 856
Hpy8I	GTNNAC	2 cut(s)	436, 484
HpyAV	CCTTC	1 cut(s)	634
HpyCH4III	ACNGT	2 cut(s)	728, 748
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	244, 316, 689, 737, 838
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 459, 770, 917
HpyF3I	CTNAG	1 cut(s)	664
HpySE526I	ACGT	1 cut(s)	318
Ksp22I	TGATCA	1 cut(s)	571
KspAI	GTTAAC	1 cut(s)	484
Kzo9I	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
LmnI	GCTCC	3 cut(s)	146, 783, 858
Lsp1109I	GCAGC	1 cut(s)	855
LweI	GCATC	2 cut(s)	253, 855
MaeI	CTAG	1 cut(s)	450
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	5 cut(s)	187, 220, 421, 606, 742
MalI	GATC	7 cut(s)	200, 252, 469, 522, 573, 804, 860
MboI	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
MboII	GAAGA	5 cut(s)	34, 649, 652, 759, 797
MflI	RGATCY	1 cut(s)	467
MhlI	GDGCHC	1 cut(s)	780
MlsI	TGGCCA	2 cut(s)	5, 701
MluCI	AATT	2 cut(s)	352, 684
MluNI	TGGCCA	2 cut(s)	5, 701
MlyI	GAGTC	3 cut(s)	119, 323, 431
MnlI	CCTC	8 cut(s)	44, 65, 84, 187, 358, 508, 581, 791
Mox20I	TGGCCA	2 cut(s)	5, 701
MscI	TGGCCA	2 cut(s)	5, 701
MseI	TTAA	2 cut(s)	483, 922
MslI	CAYNNNNRTG	4 cut(s)	194, 263, 567, 788
Msp20I	TGGCCA	2 cut(s)	5, 701
MspA1I	CMGCKG	2 cut(s)	604, 773
MspI	CCGG	3 cut(s)	285, 477, 891
MspR9I	CCNGG	1 cut(s)	185
Mva1269I	GAATGC	2 cut(s)	110, 766
MvaI	CCWGG	1 cut(s)	185
MvnI	CGCG	1 cut(s)	618
MwoI	GCNNNNNNNGC	4 cut(s)	322, 459, 770, 917
NcoI	CCATGG	2 cut(s)	441, 627
NdeII	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
NlaIV	GGNNCC	3 cut(s)	779, 828, 889
NmuCI	GTSAC	5 cut(s)	187, 220, 421, 606, 742
NspI	RCATGY	2 cut(s)	343, 901
PciI	ACATGT	1 cut(s)	339
PctI	GAATGC	2 cut(s)	110, 766
PkrI	GCNGC	2 cut(s)	508, 845
Ple19I	CGATCG	1 cut(s)	253
PleI	GAGTC	3 cut(s)	118, 323, 431
PpsI	GAGTC	3 cut(s)	118, 323, 431
PscI	ACATGT	1 cut(s)	339
Psp6I	CCWGG	1 cut(s)	183
PspEI	GGTNACC	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	773
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	3 cut(s)	779, 828, 889
PspPI	GGNCC	1 cut(s)	827
PsuI	RGATCY	1 cut(s)	467
PvuI	CGATCG	1 cut(s)	253
PvuII	CAGCTG	2 cut(s)	604, 773
RsaI	GTAC	2 cut(s)	30, 716
RsaNI	GTAC	2 cut(s)	29, 715
RseI	CAYNNNNRTG	4 cut(s)	194, 263, 567, 788
SaqAI	TTAA	2 cut(s)	483, 922
SatI	GCNGC	2 cut(s)	507, 844
Sau3AI	GATC	7 cut(s)	198, 250, 467, 520, 571, 802, 858
Sau96I	GGNCC	1 cut(s)	827
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	3 cut(s)	119, 323, 431
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	780
SetI	ASST	6 cut(s)	82, 238, 321, 606, 775, 855
SfaNI	GCATC	2 cut(s)	253, 855
SinI	GGWCC	1 cut(s)	827
SmiMI	CAYNNNNRTG	4 cut(s)	194, 263, 567, 788
SmlI	CTYRAG	1 cut(s)	75
SmoI	CTYRAG	1 cut(s)	75
Sse9I	AATT	2 cut(s)	352, 684
SsiI	CCGC	6 cut(s)	63, 414, 507, 539, 546, 875
SspMI	CTAG	1 cut(s)	450
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	2 cut(s)	441, 627
TaaI	ACNGT	2 cut(s)	728, 748
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	2 cut(s)	253, 350
TasI	AATT	2 cut(s)	352, 684
TatI	WGTACW	2 cut(s)	28, 714
TauI	GCSGC	1 cut(s)	509
Tru1I	TTAA	2 cut(s)	483, 922
Tru9I	TTAA	2 cut(s)	483, 922
TscAI	CASTG	3 cut(s)	156, 397, 696
TseFI	GTSAC	5 cut(s)	187, 220, 421, 606, 742
TseI	GCWGC	1 cut(s)	843
Tsp45I	GTSAC	5 cut(s)	187, 220, 421, 606, 742
TspDTI	ATGAA	4 cut(s)	117, 301, 551, 811
TspRI	CASTG	3 cut(s)	156, 397, 696
VpaK11BI	GGWCC	1 cut(s)	827
XceI	RCATGY	2 cut(s)	343, 901
XspI	CTAG	1 cut(s)	450
ZrmI	AGTACT	1 cut(s)	30

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.