Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008350

Physical Location & Seq

Genomic Coordinates Forward (+)

18490861 .. 18496448

Gene Structure 5588 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g17290.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGGCGGAAGACCAACAAGAAATGCGATCGTTGGCCTTGACTCCAACATGGTCTGTTGCTACTGTGTTGACAATTTTTGTGGCTGTTTCTCTGCTTGTCGAGCGTGGAATCCATAGGTTAAGCTATTGGTTGCGGAAAACTAATCGTAAGCCCTTACTTGAAGCTGTGGAGAAAATGAAAGAAGAGTTGATGTTACTTGGGTTTATCTCTCTCCTTTTGACGGCTACCTCAAGCATGATAGCCAATATTTGCATTCCATCAAAGTTCTACAATAGCAGTTTTTCTCCATGCTCTAGGTCTGAGATTACTGAAGAAACTGAAAATAAACGTAAGCTGTTGATGTTTAGTGTTCTGCCTCACTCATTCAGAAGAGTGTTAAATGAGTTGAATCGTAATTCCTGCAAAGAGGGTTATGAGCCATTTGTTTCATATCAAGGCCTTGAGCAGTTGCATCGCTTCATCTTTGTCATGGCAATAACACATATATCCTACAGCTGCTTAACGATGTTGCTGGCAATAGTGAAGATTCACAGCTGGAGAGCATGGGAGGAGGAGGCTCACATGGACCGACACGATTCATTGACTGAGATCACACGGCGGATGACAATGCGAAGGCAGTCTAGCTTTGTAAATCCATCAACTCCTGTTGTCAGGAATAACATTTTTATCTGGGTGAGATGTTTCTTTCGGCAATTTGGGAATTCAGTGGTTCGTGCTGACTATTTAACACTCCGCAAGGGCTTCATCACGAATCACAACCTTTCACCAAAGTATGATTTTCACAGCTATATGATTCGGTCTATGGAAGAGGAATTCCAAAGGATCGTTGGTGTGAGTGCCACACTCTGGGGATTTGTTGTTGCCTTCATGCTGTTTAACGTAAAAGGGTCTAATCTTTATTTCTGGATTGCAATCATTCCAATTACGCTAGTTCTTCTTGTGGGAATGAAGCTGCAGCATATTATTGCAACCCTAGCATTGGAGAATGCTGGTATAACTGGATCGCATGGAGGAGCAAAGCTGAGGCCTCGGGATGATCTTTTCTGGTTCAAGAAGCCCGAACTTTTGTTGACCTTGATCCATTTTTGTTTATTCCAGAATGCATTTGAATTGGCTTCATTCTTTTGGTTTTGGTGGCAATTTGGGTATAATTCTTGCTTTATCCGAAGGCATTGGCTCGTGTATATAAGGCTGATTTTAGGGTTTGCCGGGCAGTTCCTGTGCAGCTACAGCACCTTGCCACTGTATGCCTTGGTTACTCAGATGGGAACGAATTATAAGGCGGCAATAATCCCACAACGGATAAGAGAAACAATTCATGGATGGGGAAAGGCAGCTAGGAGGAAAAGAAGGCTAGGCATGTACACCGATGATTCAACCATACGCACAGAAACAAGCACAGTAGCATCACTTGAGGAAGATGATCGATCAAATGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

480

Amino Acids

55.83

Weight (kDa)

9.48

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26700 AT1G26700 AT5G53760 AT5G53760
fragaria_vesca	FvH4_3g20480 FvH4_3g20480 FvH4_3g20480 FvH4_3g20480
malus_domestica	MD00G1089600.v1.1 MD03G1224600.v1.1
prunus_persica	Prupe.4G184500_v2.0.a1 Prupe.4G184500_v2.0.a1
pyrus_communis	pycom03g17290 pycom11g21480
rosa_chinensis	RchiOBHm_Chr5g0034381
rosa_laevigata	RLG00000033541
rosa_multiflora	Rmu_sc0000062.1_g000018
rosa_roxburghii	Rroxscaffold_1G00045900
rosa_rugosa	Rorug05G0145400 Rorug05G0145500
rosa_samantha	Rh5AG237100 Rh5DG245100
rosa_wichuraiana	Rw5G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1278
AccB7I	CCANNNNNTGG	1 cut(s)	846
AciI	CCGC	5 cut(s)	5, 133, 598, 733, 1283
AclWI	GGATC	3 cut(s)	830, 1009, 1072
AcsI	RAATTY	2 cut(s)	700, 812
AcuI	CTGAAG	1 cut(s)	330
AfaI	GTAC	1 cut(s)	1364
AfiI	CCNNNNNNNGG	3 cut(s)	220, 846, 979
AgsI	TTSAA	5 cut(s)	161, 388, 1051, 1109, 1377
AlwI	GGATC	3 cut(s)	830, 1009, 1072
AlwNI	CAGNNNCTG	1 cut(s)	1219
Ama87I	CYCGRG	1 cut(s)	1029
AoxI	GGCC	3 cut(s)	33, 436, 1025
ApeKI	GCWGC	5 cut(s)	495, 952, 955, 1224, 1334
ApoI	RAATTY	2 cut(s)	700, 812
Asp700I	GAANNNNTTC	1 cut(s)	1314
AspS9I	GGNCC	1 cut(s)	565
AsuC2I	CCSGG	1 cut(s)	1210
AsuHPI	GGTGA	2 cut(s)	685, 756
AvaI	CYCGRG	1 cut(s)	1029
AvaII	GGWCC	1 cut(s)	565
BauI	CACGAG	1 cut(s)	1178
BbsI	GAAGAC	1 cut(s)	15
BbvCI	CCTCAGC	1 cut(s)	1022
BbvI	GCAGC	5 cut(s)	482, 939, 967, 1236, 1346
BccI	CCATC	4 cut(s)	265, 643, 1258, 1317
BceAI	ACGGC	2 cut(s)	237, 611
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BcnI	CCSGG	1 cut(s)	1210
BfaI	CTAG	6 cut(s)	294, 621, 929, 974, 1338, 1355
BfmI	CTRYAG	3 cut(s)	490, 953, 1228
BisI	GCNGC	6 cut(s)	496, 953, 956, 1225, 1284, 1335
BlsI	GCNGC	6 cut(s)	497, 954, 957, 1226, 1285, 1336
Bme1390I	CCNGG	1 cut(s)	1210
Bme18I	GGWCC	1 cut(s)	565
BmeT110I	CYCGRG	1 cut(s)	1029
BmgT120I	GGNCC	1 cut(s)	565
BmrFI	CCNGG	1 cut(s)	1210
BmsI	GCATC	2 cut(s)	460, 1415
BpiI	GAAGAC	1 cut(s)	15
BpmI	CTGGAG	1 cut(s)	556
Bpu10I	CCTNAGC	1 cut(s)	1022
BpuEI	CTTGAG	3 cut(s)	214, 461, 1433
BpuMI	CCSGG	1 cut(s)	1210
Bsa29I	ATCGAT	1 cut(s)	1426
BsaBI	GATNNNNATC	1 cut(s)	911
BsaJI	CCNNGG	2 cut(s)	1028, 1251
Bsc4I	CCNNNNNNNGG	3 cut(s)	220, 846, 979
Bse1I	ACTGG	1 cut(s)	1003
Bse8I	GATNNNNATC	1 cut(s)	911
BseCI	ATCGAT	1 cut(s)	1426
BseDI	CCNNGG	2 cut(s)	1028, 1251
BseGI	GGATG	3 cut(s)	606, 1039, 1328
BseJI	GATNNNNATC	1 cut(s)	911
BseLI	CCNNNNNNNGG	3 cut(s)	220, 846, 979
BseMII	CTCAG	4 cut(s)	291, 576, 1013, 1274
BseNI	ACTGG	1 cut(s)	1003
BseRI	GAGGAG	3 cut(s)	563, 566, 1026
BseXI	GCAGC	5 cut(s)	482, 939, 967, 1236, 1346
BsgI	GTGCAG	1 cut(s)	1243
Bsh1285I	CGRYCG	1 cut(s)	29
BshFI	GGCC	3 cut(s)	35, 438, 1027
BshVI	ATCGAT	1 cut(s)	1426
BsiEI	CGRYCG	1 cut(s)	29
BsiHKCI	CYCGRG	1 cut(s)	1029
BsiSI	CCGG	1 cut(s)	1209
BslI	CCNNNNNNNGG	3 cut(s)	220, 846, 979
BsmI	GAATGC	3 cut(s)	252, 991, 1105
BsnI	GGCC	3 cut(s)	35, 438, 1027
BsoBI	CYCGRG	1 cut(s)	1029
Bsp1407I	TGTACA	1 cut(s)	1362
Bsp143I	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
BspACI	CCGC	5 cut(s)	5, 133, 598, 733, 1283
BspANI	GGCC	3 cut(s)	35, 438, 1027
BspCNI	CTCAG	4 cut(s)	292, 577, 1014, 1273
BspDI	ATCGAT	1 cut(s)	1426
BspMAI	CTGCAG	1 cut(s)	957
BspPI	GGATC	3 cut(s)	830, 1009, 1072
BsrGI	TGTACA	1 cut(s)	1362
BsrI	ACTGG	1 cut(s)	1003
BssECI	CCNNGG	2 cut(s)	1028, 1251
BssMI	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
BssSI	CACGAG	1 cut(s)	1178
BssT1I	CCWWGG	1 cut(s)	1251
Bst2BI	CACGAG	1 cut(s)	1178
Bst4CI	ACNGT	3 cut(s)	64, 1245, 1402
Bst6I	CTCTTC	3 cut(s)	177, 364, 801
BstAUI	TGTACA	1 cut(s)	1362
BstC8I	GCNNGC	1 cut(s)	513
BstDEI	CTNAG	4 cut(s)	300, 585, 1022, 1260
BstF5I	GGATG	3 cut(s)	606, 1039, 1328
BstKTI	GATC	8 cut(s)	29, 591, 825, 1004, 1039, 1080, 1426, 1430
BstMBI	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
BstMCI	CGRYCG	1 cut(s)	29
BstMWI	GCNNNNNNNGC	3 cut(s)	100, 974, 1230
BstNSI	RCATGY	1 cut(s)	1363
BstSCI	CCNGG	1 cut(s)	1208
BstSFI	CTRYAG	3 cut(s)	490, 953, 1228
BstV1I	GCAGC	5 cut(s)	482, 939, 967, 1236, 1346
BstV2I	GAAGAC	1 cut(s)	15
Bsu15I	ATCGAT	1 cut(s)	1426
BsuRI	GGCC	3 cut(s)	35, 438, 1027
BsuTUI	ATCGAT	1 cut(s)	1426
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	3 cut(s)	606, 1039, 1328
BtsIMutI	CAGTG	2 cut(s)	711, 1241
Cac8I	GCNNGC	1 cut(s)	513
CaiI	CAGNNNCTG	1 cut(s)	1219
Cfr13I	GGNCC	1 cut(s)	565
ClaI	ATCGAT	1 cut(s)	1426
Csp6I	GTAC	1 cut(s)	1363
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviQI	GTAC	1 cut(s)	1363
DdeI	CTNAG	4 cut(s)	300, 585, 1022, 1260
DpnI	GATC	8 cut(s)	28, 590, 824, 1003, 1038, 1079, 1425, 1429
DpnII	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
Eam1104I	CTCTTC	3 cut(s)	177, 364, 801
EarI	CTCTTC	3 cut(s)	177, 364, 801
EciI	GGCGGA	2 cut(s)	20, 613
Eco130I	CCWWGG	1 cut(s)	1251
Eco147I	AGGCCT	2 cut(s)	438, 1027
Eco47I	GGWCC	1 cut(s)	565
Eco57I	CTGAAG	1 cut(s)	330
Eco88I	CYCGRG	1 cut(s)	1029
EcoRI	GAATTC	2 cut(s)	700, 812
EcoT14I	CCWWGG	1 cut(s)	1251
EcoT22I	ATGCAT	1 cut(s)	1105
ErhI	CCWWGG	1 cut(s)	1251
Fnu4HI	GCNGC	6 cut(s)	496, 953, 956, 1225, 1284, 1335
FokI	GGATG	3 cut(s)	613, 1046, 1335
Fsp4HI	GCNGC	6 cut(s)	496, 953, 956, 1225, 1284, 1335
FspBI	CTAG	6 cut(s)	294, 621, 929, 974, 1338, 1355
GluI	GCNGC	6 cut(s)	496, 953, 956, 1225, 1284, 1335
GsuI	CTGGAG	1 cut(s)	556
HaeIII	GGCC	3 cut(s)	35, 438, 1027
HapII	CCGG	1 cut(s)	1209
HincII	GTYRAC	2 cut(s)	69, 1071
HindII	GTYRAC	2 cut(s)	69, 1071
HinfI	GANTC	8 cut(s)	40, 108, 388, 526, 575, 751, 793, 1373
HpaII	CCGG	1 cut(s)	1209
HphI	GGTGA	2 cut(s)	685, 756
Hpy166II	GTNNAC	3 cut(s)	69, 1071, 1365
Hpy188I	TCNGA	4 cut(s)	301, 368, 1166, 1263
Hpy188III	TCNNGA	6 cut(s)	652, 748, 904, 1031, 1051, 1096
Hpy8I	GTNNAC	3 cut(s)	69, 1071, 1365
HpyAV	CCTTC	4 cut(s)	606, 874, 1161, 1344
HpyCH4III	ACNGT	3 cut(s)	64, 1245, 1402
HpyCH4IV	ACGT	2 cut(s)	328, 879
HpyCH4V	TGCA	8 cut(s)	252, 402, 451, 911, 955, 968, 1103, 1224
HpyF10VI	GCNNNNNNNGC	3 cut(s)	100, 974, 1230
HpyF3I	CTNAG	4 cut(s)	300, 585, 1022, 1260
HpySE526I	ACGT	2 cut(s)	328, 879
Kzo9I	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
LmnI	GCTCC	1 cut(s)	1013
Lsp1109I	GCAGC	5 cut(s)	482, 939, 967, 1236, 1346
LweI	GCATC	2 cut(s)	460, 1415
MaeI	CTAG	6 cut(s)	294, 621, 929, 974, 1338, 1355
MaeII	ACGT	2 cut(s)	328, 879
MaeIII	GTNAC	2 cut(s)	192, 1255
MalI	GATC	8 cut(s)	28, 590, 824, 1003, 1038, 1079, 1425, 1429
MboI	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
MboII	GAAGA	8 cut(s)	20, 194, 323, 381, 535, 818, 926, 1430
MlyI	GAGTC	1 cut(s)	34
MmeI	TCCRAC	1 cut(s)	68
Mph1103I	ATGCAT	1 cut(s)	1105
MroXI	GAANNNNTTC	1 cut(s)	1314
MseI	TTAA	5 cut(s)	119, 377, 500, 725, 876
MspA1I	CMGCKG	2 cut(s)	495, 534
MspI	CCGG	1 cut(s)	1209
MspR9I	CCNGG	1 cut(s)	1210
Mva1269I	GAATGC	3 cut(s)	252, 991, 1105
MwoI	GCNNNNNNNGC	3 cut(s)	100, 974, 1230
NciI	CCSGG	1 cut(s)	1210
NdeII	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
NsiI	ATGCAT	1 cut(s)	1105
NspI	RCATGY	1 cut(s)	1363
PceI	AGGCCT	2 cut(s)	438, 1027
PctI	GAATGC	3 cut(s)	252, 991, 1105
PdmI	GAANNNNTTC	1 cut(s)	1314
PfeI	GAWTC	7 cut(s)	108, 388, 526, 575, 751, 793, 1373
PflMI	CCANNNNNTGG	1 cut(s)	846
PkrI	GCNGC	6 cut(s)	497, 954, 957, 1226, 1285, 1336
Ple19I	CGATCG	1 cut(s)	29
PleI	GAGTC	1 cut(s)	34
PpsI	GAGTC	1 cut(s)	34
PsiI	TTATAA	1 cut(s)	1278
PspPI	GGNCC	1 cut(s)	565
PstI	CTGCAG	1 cut(s)	957
PstNI	CAGNNNCTG	1 cut(s)	1219
PvuI	CGATCG	1 cut(s)	29
PvuII	CAGCTG	2 cut(s)	495, 534
RsaI	GTAC	1 cut(s)	1364
RsaNI	GTAC	1 cut(s)	1363
SaqAI	TTAA	5 cut(s)	119, 377, 500, 725, 876
SatI	GCNGC	6 cut(s)	496, 953, 956, 1225, 1284, 1335
Sau3AI	GATC	8 cut(s)	26, 588, 822, 1001, 1036, 1077, 1423, 1427
Sau96I	GGNCC	1 cut(s)	565
SchI	GAGTC	1 cut(s)	34
ScrFI	CCNGG	1 cut(s)	1210
SfaNI	GCATC	2 cut(s)	460, 1415
SfcI	CTRYAG	3 cut(s)	490, 953, 1228
SinI	GGWCC	1 cut(s)	565
SmlI	CTYRAG	3 cut(s)	229, 440, 1412
SmoI	CTYRAG	3 cut(s)	229, 440, 1412
SseBI	AGGCCT	2 cut(s)	438, 1027
SsiI	CCGC	5 cut(s)	5, 133, 598, 733, 1283
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	6 cut(s)	294, 621, 929, 974, 1338, 1355
StuI	AGGCCT	2 cut(s)	438, 1027
StyD4I	CCNGG	1 cut(s)	1208
StyI	CCWWGG	1 cut(s)	1251
TaaI	ACNGT	3 cut(s)	64, 1245, 1402
TaiI	ACGT	2 cut(s)	331, 882
TaqI	TCGA	2 cut(s)	99, 1426
TaqII	GACCGA	2 cut(s)	582, 786
TatI	WGTACW	1 cut(s)	1362
TauI	GCSGC	1 cut(s)	1286
TfiI	GAWTC	7 cut(s)	108, 388, 526, 575, 751, 793, 1373
Tru1I	TTAA	5 cut(s)	119, 377, 500, 725, 876
Tru9I	TTAA	5 cut(s)	119, 377, 500, 725, 876
TscAI	CASTG	2 cut(s)	711, 1248
TseI	GCWGC	5 cut(s)	495, 952, 955, 1224, 1334
TspDTI	ATGAA	9 cut(s)	191, 417, 448, 567, 733, 856, 962, 1107, 1307
TspGWI	ACGGA	1 cut(s)	1315
TspRI	CASTG	2 cut(s)	711, 1248
Van91I	CCANNNNNTGG	1 cut(s)	846
VpaK11BI	GGWCC	1 cut(s)	565
XapI	RAATTY	2 cut(s)	700, 812
XceI	RCATGY	1 cut(s)	1363
XcmI	CCANNNNNNNNNTGG	1 cut(s)	824
XmnI	GAANNNNTTC	1 cut(s)	1314
XspI	CTAG	6 cut(s)	294, 621, 929, 974, 1338, 1355
Zsp2I	ATGCAT	1 cut(s)	1105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.