Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000062.1

Orthogroup ID

OG0008350

Physical Location & Seq

Genomic Coordinates Forward (+)

87572 .. 94701

Gene Structure 7130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000062.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

atggccgaagatgcacaagaaatgcgctctttggccttgacaccaacatggtctgttgctactgtgttgacaatttttgtggctgtttctctgcttgtggagcgcagcattcatcggttaagccattggttgcggaaaactaatcgtaagcccttgcttgaagctgtggagaaaatgaaggaagagttgatgctgcttggatttatctctcttcttttgacggctacctcaagcacgatagccaatatttgcattccatcaaacttctatgatagcaagttttctccatgtacaagaaaagagattgatgaagaaaatgaaactaagacatctgaggaacgcaaactattgatgtttactgttctgcctcatacgtttaggagaatgttaaatggcttgaatgctaatacctgcaaagagggttatgagccattcgtttcatatcaaggtcttgagcagttgcaccgcttcatctttgtcatggcaataacacatgtatcctacagctgcttaacgatgttgctggcaatagtgaagattcacggttggagagcatgggaggatgcggctcacatggacaggcatgattcattgactgaaatcacacggcagatgacaatgcgaaggcagtctacctttgtaaatacatcaaatccactggccaggaatagttttttaatctgggtgatatgcttcttcaggcaattcgggcattcagtggttcgtgctgactacttaacactccgcaagggtttcatcatgaatcacaaccttccaccaaagtatgattttcacagctatatgattcgatctatggaagaggaattccaaagaatagttggtgtgagtgctccactctggggatttgtcgtggctttcatgctgtttaatgtacaagggtctaatctttatttctggattgcaatcattccaattactctagtccttcttgtgggaatgaagttgcagcatgttattgcaacccttgctttggagaatgctggtatatctggatcctatccaggagcaaagctgaggcctcgagatgatcttttctggttcaagaagccagaacttctgttgtccttgatacatttttgtttgttccagaatgcgtttgagttggcttcattcttttggttttggtggcagtttgggtatagttcttgcttcattcggaatcatacacttgtgtatttgaggctgattttagggtttgctgggcaattcctgtgcagctacagcaccttgccactgtatgccttggttactcagatgggaacaaattataaggccgcactaatcccacaaaggataagagaaaccatacatgggtggaaaaaagcagctaggaggaaaagaaggctaggcacatacaatgacgattcaaccatacacacatgtacagacacaagcacagtagtgtcggttgaggacgatgatcgtgattttttcgatggcccagcaactgatgccaatacacataatggagttgagttgcaaccagtttctagtgtgatgaacagtcctttcccagttgctaacgaaacatcaagtagggcaggtacaccccttcttcgtccatcggcatctgtttctgcatcagtagtattgaattttcaaccagaaactgttccaagatctgcatcaatgaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mlo

Protein Analysis

552

Amino Acids

63.15

Weight (kDa)

8.93

Isoelectric Point (pI)

43.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008350)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G26700 AT1G26700 AT5G53760 AT5G53760
fragaria_vesca	FvH4_3g20480 FvH4_3g20480 FvH4_3g20480 FvH4_3g20480
malus_domestica	MD00G1089600.v1.1 MD03G1224600.v1.1
prunus_persica	Prupe.4G184500_v2.0.a1 Prupe.4G184500_v2.0.a1
pyrus_communis	pycom03g17290 pycom11g21480
rosa_chinensis	RchiOBHm_Chr5g0034381
rosa_laevigata	RLG00000033541
rosa_multiflora	Rmu_sc0000062.1_g000018
rosa_roxburghii	Rroxscaffold_1G00045900
rosa_rugosa	Rorug05G0145400 Rorug05G0145500
rosa_samantha	Rh5AG237100 Rh5DG245100
rosa_wichuraiana	Rw5G021690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1290
Acc36I	ACCTGC	2 cut(s)	419, 1553
AccI	GTMKAC	1 cut(s)	632
AciI	CCGC	5 cut(s)	133, 466, 566, 745, 1296
AclWI	GGATC	2 cut(s)	1008, 1021
AcoI	YGGCCR	2 cut(s)	3, 660
AcsI	RAATTY	2 cut(s)	824, 1615
AcuI	CTGAAG	1 cut(s)	682
AfaI	GTAC	4 cut(s)	292, 894, 1405, 1567
AfiI	CCNNNNNNNGG	4 cut(s)	860, 952, 991, 1332
AflIII	ACRYGT	2 cut(s)	493, 1400
AgsI	TTSAA	6 cut(s)	161, 400, 1063, 1389, 1615, 1622
AjnI	CCWGG	2 cut(s)	662, 1021
AleI	CACNNNNGTG	1 cut(s)	1421
AluBI	AGCT	6 cut(s)	164, 507, 798, 1033, 1239, 1349
AluI	AGCT	6 cut(s)	164, 507, 798, 1033, 1239, 1349
Alw21I	GWGCWC	1 cut(s)	853
AlwI	GGATC	2 cut(s)	1008, 1021
AlwNI	CAGNNNCTG	2 cut(s)	1469, 1631
Ama87I	CYCGRG	1 cut(s)	1041
AoxI	GGCC	6 cut(s)	3, 33, 660, 1037, 1293, 1459
ApeKI	GCWGC	6 cut(s)	105, 193, 507, 967, 1236, 1346
ApoI	RAATTY	2 cut(s)	824, 1615
Asp700I	GAANNNNTTC	1 cut(s)	1632
AspLEI	GCGC	2 cut(s)	27, 105
AspS9I	GGNCC	1 cut(s)	1460
AsuHPI	GGTGA	1 cut(s)	697
AvaI	CYCGRG	1 cut(s)	1041
BaeI	ACNNNNGTAYC	2 cut(s)	480, 513
BalI	TGGCCA	1 cut(s)	662
BamHI	GGATCC	1 cut(s)	1013
BarI	GAAGNNNNNNTAC	2 cut(s)	616, 648
Bbv12I	GWGCWC	1 cut(s)	853
BbvCI	CCTCAGC	1 cut(s)	1034
BbvI	GCAGC	6 cut(s)	117, 180, 494, 979, 1248, 1358
BccI	CCATC	4 cut(s)	265, 1270, 1451, 1591
BceAI	ACGGC	2 cut(s)	237, 623
BciT130I	CCWGG	2 cut(s)	664, 1023
BciVI	GTATCC	1 cut(s)	508
BfaI	CTAG	4 cut(s)	941, 1350, 1367, 1512
BfmI	CTRYAG	2 cut(s)	502, 1240
BfuAI	ACCTGC	2 cut(s)	419, 1553
BfuI	GTATCC	1 cut(s)	508
BglII	AGATCT	1 cut(s)	1640
BisI	GCNGC	8 cut(s)	106, 194, 508, 567, 968, 1237, 1296, 1347
BlsI	GCNGC	8 cut(s)	107, 195, 509, 568, 969, 1238, 1297, 1348
Bme1390I	CCNGG	2 cut(s)	664, 1023
BmeT110I	CYCGRG	1 cut(s)	1041
BmgT120I	GGNCC	1 cut(s)	1460
BmiI	GGNNCC	1 cut(s)	1015
BmrFI	CCNGG	2 cut(s)	664, 1023
BmrI	ACTGGG	1 cut(s)	1529
BmsI	GCATC	6 cut(s)	180, 553, 1462, 1598, 1610, 1655
BmuI	ACTGGG	1 cut(s)	1529
Bpu10I	CCTNAGC	1 cut(s)	1034
BpuEI	CTTGAG	2 cut(s)	214, 473
BsaBI	GATNNNNATC	2 cut(s)	923, 1645
BsaJI	CCNNGG	1 cut(s)	1263
Bsc4I	CCNNNNNNNGG	4 cut(s)	860, 952, 991, 1332
Bse1I	ACTGG	3 cut(s)	663, 1505, 1535
Bse8I	GATNNNNATC	2 cut(s)	923, 1645
BseBI	CCWGG	2 cut(s)	664, 1023
BseDI	CCNNGG	1 cut(s)	1263
BseGI	GGATG	1 cut(s)	568
BseJI	GATNNNNATC	2 cut(s)	923, 1645
BseLI	CCNNNNNNNGG	4 cut(s)	860, 952, 991, 1332
BseMII	CTCAG	3 cut(s)	324, 1025, 1286
BseNI	ACTGG	3 cut(s)	663, 1505, 1535
BseXI	GCAGC	6 cut(s)	117, 180, 494, 979, 1248, 1358
BseYI	CCCAGC	2 cut(s)	1220, 1462
BsgI	GTGCAG	1 cut(s)	1255
BshFI	GGCC	6 cut(s)	5, 35, 662, 1039, 1295, 1461
BsiHKAI	GWGCWC	1 cut(s)	853
BsiHKCI	CYCGRG	1 cut(s)	1041
BslI	CCNNNNNNNGG	4 cut(s)	860, 952, 991, 1332
BsmI	GAATGC	6 cut(s)	108, 252, 406, 712, 1003, 1117
BsnI	GGCC	6 cut(s)	5, 35, 662, 1039, 1295, 1461
BsoBI	CYCGRG	1 cut(s)	1041
Bsp1286I	GDGCHC	1 cut(s)	853
Bsp1407I	TGTACA	3 cut(s)	290, 892, 1403
Bsp143I	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
BspACI	CCGC	5 cut(s)	133, 466, 566, 745, 1296
BspANI	GGCC	6 cut(s)	5, 35, 662, 1039, 1295, 1461
BspCNI	CTCAG	3 cut(s)	325, 1026, 1285
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	1 cut(s)	1015
BspMI	ACCTGC	2 cut(s)	419, 1553
BspPI	GGATC	2 cut(s)	1008, 1021
BsrGI	TGTACA	3 cut(s)	290, 892, 1403
BsrI	ACTGG	3 cut(s)	663, 1505, 1535
BssECI	CCNNGG	1 cut(s)	1263
BssMI	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
BssT1I	CCWWGG	1 cut(s)	1263
Bst2UI	CCWGG	2 cut(s)	664, 1023
Bst4CI	ACNGT	7 cut(s)	64, 361, 545, 1257, 1420, 1526, 1633
Bst6I	CTCTTC	3 cut(s)	177, 216, 813
BstAPI	GCANNNNNTGC	2 cut(s)	986, 1472
BstAUI	TGTACA	3 cut(s)	290, 892, 1403
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	4 cut(s)	324, 333, 1034, 1272
BstF5I	GGATG	1 cut(s)	568
BstHHI	GCGC	2 cut(s)	27, 105
BstKTI	GATC	5 cut(s)	812, 1016, 1051, 1444, 1643
BstMBI	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 100, 709, 986, 1242, 1472
BstNI	CCWGG	2 cut(s)	664, 1023
BstNSI	RCATGY	3 cut(s)	497, 974, 1404
BstSCI	CCNGG	2 cut(s)	662, 1021
BstSFI	CTRYAG	2 cut(s)	502, 1240
BstV1I	GCAGC	6 cut(s)	117, 180, 494, 979, 1248, 1358
BstX2I	RGATCY	2 cut(s)	1013, 1640
BstYI	RGATCY	2 cut(s)	1013, 1640
BsuI	GTATCC	1 cut(s)	508
BsuRI	GGCC	6 cut(s)	5, 35, 662, 1039, 1295, 1461
BtsCI	GGATG	1 cut(s)	568
BtsIMutI	CAGTG	3 cut(s)	656, 723, 1253
BveI	ACCTGC	2 cut(s)	419, 1553
Cac8I	GCNNGC	1 cut(s)	525
CaiI	CAGNNNCTG	2 cut(s)	1469, 1631
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	2 cut(s)	27, 105
Cfr13I	GGNCC	1 cut(s)	1460
Csp6I	GTAC	4 cut(s)	291, 893, 1404, 1566
CspCI	CAANNNNNGTGG	2 cut(s)	60, 95
CviQI	GTAC	4 cut(s)	291, 893, 1404, 1566
DdeI	CTNAG	4 cut(s)	324, 333, 1034, 1272
DpnI	GATC	5 cut(s)	811, 1015, 1050, 1443, 1642
DpnII	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
EaeI	YGGCCR	2 cut(s)	3, 660
Eam1104I	CTCTTC	3 cut(s)	177, 216, 813
EarI	CTCTTC	3 cut(s)	177, 216, 813
Eco130I	CCWWGG	1 cut(s)	1263
Eco147I	AGGCCT	1 cut(s)	1039
Eco57I	CTGAAG	1 cut(s)	682
Eco88I	CYCGRG	1 cut(s)	1041
EcoRI	GAATTC	1 cut(s)	824
EcoRII	CCWGG	2 cut(s)	662, 1021
EcoT14I	CCWWGG	1 cut(s)	1263
ErhI	CCWWGG	1 cut(s)	1263
FblI	GTMKAC	1 cut(s)	632
Fnu4HI	GCNGC	8 cut(s)	106, 194, 508, 567, 968, 1237, 1296, 1347
FokI	GGATG	1 cut(s)	575
Fsp4HI	GCNGC	8 cut(s)	106, 194, 508, 567, 968, 1237, 1296, 1347
FspBI	CTAG	4 cut(s)	941, 1350, 1367, 1512
GlaI	GCGC	2 cut(s)	26, 104
GluI	GCNGC	8 cut(s)	106, 194, 508, 567, 968, 1237, 1296, 1347
GsaI	CCCAGC	2 cut(s)	1224, 1466
HaeIII	GGCC	6 cut(s)	5, 35, 662, 1039, 1295, 1461
HhaI	GCGC	2 cut(s)	27, 105
Hin6I	GCGC	2 cut(s)	25, 103
HinP1I	GCGC	2 cut(s)	25, 103
HincII	GTYRAC	1 cut(s)	69
HindII	GTYRAC	1 cut(s)	69
HinfI	GANTC	6 cut(s)	538, 587, 763, 805, 1180, 1385
HphI	GGTGA	1 cut(s)	697
Hpy166II	GTNNAC	4 cut(s)	69, 357, 633, 1568
Hpy188I	TCNGA	3 cut(s)	334, 1179, 1275
Hpy188III	TCNNGA	8 cut(s)	452, 760, 916, 1011, 1043, 1063, 1108, 1445
Hpy8I	GTNNAC	4 cut(s)	69, 357, 633, 1568
HpyAV	CCTTC	6 cut(s)	172, 618, 782, 956, 1356, 1583
HpyCH4III	ACNGT	7 cut(s)	64, 361, 545, 1257, 1420, 1526, 1633
HpyCH4IV	ACGT	1 cut(s)	374
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 100, 709, 986, 1242, 1472
HpyF3I	CTNAG	4 cut(s)	324, 333, 1034, 1272
HpySE526I	ACGT	1 cut(s)	374
HspAI	GCGC	2 cut(s)	25, 103
Kzo9I	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
LmnI	GCTCC	3 cut(s)	100, 856, 1025
Lsp1109I	GCAGC	6 cut(s)	117, 180, 494, 979, 1248, 1358
LweI	GCATC	6 cut(s)	180, 553, 1462, 1598, 1610, 1655
MaeI	CTAG	4 cut(s)	941, 1350, 1367, 1512
MaeII	ACGT	1 cut(s)	374
MaeIII	GTNAC	1 cut(s)	1267
MalI	GATC	5 cut(s)	811, 1015, 1050, 1443, 1642
MboI	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
MboII	GAAGA	8 cut(s)	20, 194, 203, 323, 547, 688, 830, 1568
MflI	RGATCY	2 cut(s)	1013, 1640
MhlI	GDGCHC	1 cut(s)	853
MlsI	TGGCCA	1 cut(s)	662
MluCI	AATT	7 cut(s)	72, 704, 824, 933, 1226, 1285, 1615
MluNI	TGGCCA	1 cut(s)	662
MmeI	TCCRAC	1 cut(s)	527
Mox20I	TGGCCA	1 cut(s)	662
MroXI	GAANNNNTTC	1 cut(s)	1632
MscI	TGGCCA	1 cut(s)	662
MseI	TTAA	6 cut(s)	119, 389, 512, 677, 737, 888
MslI	CAYNNNNRTG	2 cut(s)	46, 1421
Msp20I	TGGCCA	1 cut(s)	662
MspA1I	CMGCKG	1 cut(s)	507
MspR9I	CCNGG	2 cut(s)	664, 1023
Mva1269I	GAATGC	6 cut(s)	108, 252, 406, 712, 1003, 1117
MvaI	CCWGG	2 cut(s)	664, 1023
MwoI	GCNNNNNNNGC	6 cut(s)	11, 100, 709, 986, 1242, 1472
NdeII	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
NlaIV	GGNNCC	1 cut(s)	1015
NspI	RCATGY	3 cut(s)	497, 974, 1404
OliI	CACNNNNGTG	1 cut(s)	1421
PaeR7I	CTCGAG	1 cut(s)	1041
PagI	TCATGA	1 cut(s)	759
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	2 cut(s)	493, 1400
PctI	GAATGC	6 cut(s)	108, 252, 406, 712, 1003, 1117
PdmI	GAANNNNTTC	1 cut(s)	1632
PfeI	GAWTC	6 cut(s)	538, 587, 763, 805, 1180, 1385
PfoI	TCCNGGA	1 cut(s)	1021
PkrI	GCNGC	8 cut(s)	107, 195, 509, 568, 969, 1238, 1297, 1348
PscI	ACATGT	2 cut(s)	493, 1400
PsiI	TTATAA	1 cut(s)	1290
Psp6I	CCWGG	2 cut(s)	662, 1021
PspFI	CCCAGC	2 cut(s)	1220, 1462
PspGI	CCWGG	2 cut(s)	662, 1021
PspN4I	GGNNCC	1 cut(s)	1015
PspPI	GGNCC	1 cut(s)	1460
PstNI	CAGNNNCTG	2 cut(s)	1469, 1631
PsuI	RGATCY	2 cut(s)	1013, 1640
PvuII	CAGCTG	1 cut(s)	507
RsaI	GTAC	4 cut(s)	292, 894, 1405, 1567
RsaNI	GTAC	4 cut(s)	291, 893, 1404, 1566
RseI	CAYNNNNRTG	2 cut(s)	46, 1421
SaqAI	TTAA	6 cut(s)	119, 389, 512, 677, 737, 888
SatI	GCNGC	8 cut(s)	106, 194, 508, 567, 968, 1237, 1296, 1347
Sau3AI	GATC	5 cut(s)	809, 1013, 1048, 1441, 1640
Sau96I	GGNCC	1 cut(s)	1460
ScrFI	CCNGG	2 cut(s)	664, 1023
SduI	GDGCHC	1 cut(s)	853
SfaNI	GCATC	6 cut(s)	180, 553, 1462, 1598, 1610, 1655
SfcI	CTRYAG	2 cut(s)	502, 1240
Sfr274I	CTCGAG	1 cut(s)	1041
SlaI	CTCGAG	1 cut(s)	1041
SmiMI	CAYNNNNRTG	2 cut(s)	46, 1421
SmlI	CTYRAG	3 cut(s)	229, 452, 1041
SmoI	CTYRAG	3 cut(s)	229, 452, 1041
Sse9I	AATT	7 cut(s)	72, 704, 824, 933, 1226, 1285, 1615
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	5 cut(s)	133, 466, 566, 745, 1296
SspI	AATATT	1 cut(s)	247
SspMI	CTAG	4 cut(s)	941, 1350, 1367, 1512
StuI	AGGCCT	1 cut(s)	1039
StyD4I	CCNGG	2 cut(s)	662, 1021
StyI	CCWWGG	1 cut(s)	1263
TaaI	ACNGT	7 cut(s)	64, 361, 545, 1257, 1420, 1526, 1633
TaiI	ACGT	1 cut(s)	377
TaqI	TCGA	3 cut(s)	808, 1042, 1455
TasI	AATT	7 cut(s)	72, 704, 824, 933, 1226, 1285, 1615
TatI	WGTACW	3 cut(s)	290, 892, 1403
TauI	GCSGC	2 cut(s)	569, 1298
TfiI	GAWTC	6 cut(s)	538, 587, 763, 805, 1180, 1385
Tru1I	TTAA	6 cut(s)	119, 389, 512, 677, 737, 888
Tru9I	TTAA	6 cut(s)	119, 389, 512, 677, 737, 888
TscAI	CASTG	3 cut(s)	663, 723, 1260
TseI	GCWGC	6 cut(s)	105, 193, 507, 967, 1236, 1346
TspRI	CASTG	3 cut(s)	663, 723, 1260
XapI	RAATTY	2 cut(s)	824, 1615
XceI	RCATGY	3 cut(s)	497, 974, 1404
XcmI	CCANNNNNNNNNTGG	1 cut(s)	836
XhoI	CTCGAG	1 cut(s)	1041
XmiI	GTMKAC	1 cut(s)	632
XmnI	GAANNNNTTC	1 cut(s)	1632
XspI	CTAG	4 cut(s)	941, 1350, 1367, 1512

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.