FvH4_3g21200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0016789
Physical Location & Seq
Forward (+)
14208443 .. 14210611
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g21200.t1

Sequence Viewer

Length: 1263 bp
ATGGATACCGCAAAGGACACCGCCGCCACCTTTCCTCTCGCGTGCACCACCCCCCATGGATGTCCTGCAAAGGCCCAAGTGAGGAAGAAGAAGAAGACGAGCGCTGTAAAGTTCTTTCTATGCTTTCATAGAGACGATGTAGCGCTCCAACGGGTGGTGCCGGTGGTTTCGTCATCCATGGCGACATCGGATAGTGAATTGGAAGTAGCAAAATGTAGCAATCAACAAAGGAAGCCAGAACGACATGGATTCTTTCACGCTATGAAAGCAATGTTGTTCAAGATGTTACTGGTCAAAAAGATTCAACAAAGGAAGTCCGACAAAACTTTTGCAAAGGAGAGAGCTATTACTTCAGGGCATACTCAAGAATGGTCAGATCACGAAGATGTCCCAAAAATGATCACAAAAACAACATCGGCGGGGGGTAATGCCATCTTCACTTACGTCAAAGATAAGGAAGAAATTGTCTTTCCGACGATGCCTTCTTCGTTGCTTAAGAATGAAGAAACATGTCAAGATCAATGGCTCAACAAAGGACGACATCGATTATCTCACATTTTAAAGGCCGTATTGTTCGAGACATCACTGGCCAGGAAGATTCAAGCAAGAAAGGTTGGGAAAAAGTATGGATCAAATGGGAGTAGTTTAAGGTCCAGCACTGGTGAATCGTGTGATGATGACCCGGGAAAGTTATCGCAGTCTGCATCTTCGTTAACCAACTCTTCTGCCTTCACTTCATCTACATTAGCATCTACAACAAGTTCATCAGCAGTGTCACGCTCCACCTCACATTCAAGGTCTATATCCGAGCGAATCAGATCATTCCGATCAATCTCATCAAACAATATAAAAGCCAATTTGAGGAATTTGTCCGATAAAATCCGATCAAACTCGAAATCCAATTCGAGAAATAAGATTTCGTTAGAATCCATTAATTCGAATGGTTTGAAAGAAGAGCACCATGCACATTTTGCAGACGATGTGACTCAAACTGAAAAGAAGAACAAGAATAAAGGAAAGTGTTATCGTTCGGCTTCGGGTCTTTGCTTCTTGCTTATGAGTTTGTTGGGGTTGATATTTTATGGTAAGCTTTGGGCCATATTGTGCACTTCAATGTGGCTGGTCTGTATTCCTCTTTTTAGTTTAGGAGATCATAAATCGTCAACAAATAAGGTGGTTATTGAGAAGAAGGAAGTCACCACGGGTGGAGGAATGCTAGCAGGGATACCTCGAACACGAACTCGAATTTTTCAAAGTCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

421

Amino Acids

46.5

Weight (kDa)

9.9

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016789)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21200
malus_domestica MD03G1217100.v1.1 MD11G1234800.v1.1
prunus_persica Prupe.4G192300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0036261
rosa_laevigata RLG00000033682
rosa_multiflora Rmu_sc0000247.1_g000012
rosa_roxburghii Rroxscaffold_1G00044530
rosa_rugosa Rorug05G0154400
rosa_samantha Rh5AG248100 Rh5BG248700 Rh5CG280000 Rh5DG257000
rosa_wichuraiana Rw5G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 157
AccB7I CCANNNNNTGG 1 cut(s) 154
AccII CGCG 1 cut(s) 41
AciI CCGC 4 cut(s) 9, 21, 24, 419
AclWI GGATC 1 cut(s) 637
AcoI YGGCCR 1 cut(s) 588
AcsI RAATTY 2 cut(s) 865, 1245
AcuI CTGAAG 1 cut(s) 336
AfeI AGCGCT 2 cut(s) 103, 144
AfiI CCNNNNNNNGG 3 cut(s) 81, 154, 861
AflII CTTAAG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 509
AgsI TTSAA 7 cut(s) 280, 305, 602, 795, 949, 1113, 1253
AjnI CCWGG 1 cut(s) 590
AluBI AGCT 2 cut(s) 344, 1090
AluI AGCT 2 cut(s) 344, 1090
Alw21I GWGCWC 3 cut(s) 47, 960, 1109
Alw26I GTCTC 2 cut(s) 126, 572
Alw44I GTGCAC 2 cut(s) 43, 1105
AlwI GGATC 1 cut(s) 637
Ama87I CYCGRG 1 cut(s) 682
Aor51HI AGCGCT 2 cut(s) 103, 144
AoxI GGCC 4 cut(s) 72, 564, 588, 1095
ApaLI GTGCAC 2 cut(s) 43, 1105
ApoI RAATTY 2 cut(s) 865, 1245
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AseI ATTAAT 1 cut(s) 933
AspLEI GCGC 2 cut(s) 104, 145
AspS9I GGNCC 3 cut(s) 73, 651, 1095
AsuC2I CCSGG 2 cut(s) 683, 684
AsuHPI GGTGA 2 cut(s) 674, 1189
AsuII TTCGAA 1 cut(s) 938
AsuNHI GCTAGC 1 cut(s) 1216
AvaI CYCGRG 1 cut(s) 682
AvaII GGWCC 1 cut(s) 651
BaeGI GKGCMC 2 cut(s) 47, 1109
BalI TGGCCA 1 cut(s) 590
BanI GGYRCC 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 3 cut(s) 47, 960, 1109
BccI CCATC 1 cut(s) 440
BceAI ACGGC 1 cut(s) 551
BciT130I CCWGG 1 cut(s) 592
BciVI GTATCC 1 cut(s) 1218
BclI TGATCA 1 cut(s) 399
BcnI CCSGG 2 cut(s) 683, 684
BcoDI GTCTC 2 cut(s) 126, 572
BfaI CTAG 1 cut(s) 1217
BfoI RGCGCY 2 cut(s) 105, 146
BfrI CTTAAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 1218
BisI GCNGC 1 cut(s) 24
BlsI GCNGC 1 cut(s) 25
Bme1390I CCNGG 3 cut(s) 592, 683, 684
Bme18I GGWCC 1 cut(s) 651
BmeT110I CYCGRG 1 cut(s) 682
BmgT120I GGNCC 3 cut(s) 73, 651, 1095
BmiI GGNNCC 1 cut(s) 159
BmrFI CCNGG 3 cut(s) 592, 683, 684
BmsI GCATC 3 cut(s) 468, 713, 758
BmtI GCTAGC 1 cut(s) 1220
BpiI GAAGAC 1 cut(s) 101
Bpu14I TTCGAA 1 cut(s) 938
BpuEI CTTGAG 1 cut(s) 348
BpuMI CCSGG 2 cut(s) 683, 684
Bsa29I ATCGAT 1 cut(s) 544
BsaJI CCNNGG 4 cut(s) 55, 177, 682, 1200
Bsc4I CCNNNNNNNGG 3 cut(s) 81, 154, 861
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 3 cut(s) 294, 591, 664
Bse3DI GCAATG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 592
BseCI ATCGAT 1 cut(s) 544
BseDI CCNNGG 4 cut(s) 55, 177, 682, 1200
BseGI GGATG 2 cut(s) 65, 173
BseLI CCNNNNNNNGG 3 cut(s) 81, 154, 861
BseMI GCAATG 1 cut(s) 276
BseNI ACTGG 3 cut(s) 294, 591, 664
BseSI GKGCMC 2 cut(s) 47, 1109
Bsh1236I CGCG 1 cut(s) 41
BshFI GGCC 4 cut(s) 74, 566, 590, 1097
BshNI GGYRCC 1 cut(s) 157
BshVI ATCGAT 1 cut(s) 544
BsiHKAI GWGCWC 3 cut(s) 47, 960, 1109
BsiHKCI CYCGRG 1 cut(s) 682
BsiSI CCGG 2 cut(s) 161, 683
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 3 cut(s) 81, 154, 861
BsmAI GTCTC 2 cut(s) 126, 572
BsmBI CGTCTC 1 cut(s) 126
BsmFI GGGAC 1 cut(s) 374
BsmI GAATGC 1 cut(s) 1218
BsnI GGCC 4 cut(s) 74, 566, 590, 1097
BsoBI CYCGRG 1 cut(s) 682
Bsp119I TTCGAA 1 cut(s) 938
Bsp1286I GDGCHC 3 cut(s) 47, 960, 1109
Bsp143I GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
Bsp19I CCATGG 2 cut(s) 55, 177
BspACI CCGC 4 cut(s) 9, 21, 24, 419
BspANI GGCC 4 cut(s) 74, 566, 590, 1097
BspDI ATCGAT 1 cut(s) 544
BspFNI CGCG 1 cut(s) 41
BspLI GGNNCC 1 cut(s) 159
BspOI GCTAGC 1 cut(s) 1220
BspPI GGATC 1 cut(s) 637
BspQI GCTCTTC 1 cut(s) 948
BspT104I TTCGAA 1 cut(s) 938
BspT107I GGYRCC 1 cut(s) 157
BspTI CTTAAG 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 3 cut(s) 294, 591, 664
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 4 cut(s) 55, 177, 682, 1200
BssMI GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
BssT1I CCWWGG 2 cut(s) 55, 177
Bst2UI CCWGG 1 cut(s) 592
Bst6I CTCTTC 2 cut(s) 727, 948
BstAFI CTTAAG 1 cut(s) 494
BstAPI GCANNNNNTGC 1 cut(s) 971
BstBI TTCGAA 1 cut(s) 938
BstC8I GCNNGC 2 cut(s) 43, 1218
BstDSI CCRYGG 3 cut(s) 55, 177, 1200
BstF5I GGATG 2 cut(s) 65, 173
BstFNI CGCG 1 cut(s) 41
BstH2I RGCGCY 2 cut(s) 105, 146
BstHHI GCGC 2 cut(s) 104, 145
BstKTI GATC 8 cut(s) 379, 402, 520, 632, 821, 830, 887, 1153
BstMAI GTCTC 2 cut(s) 126, 572
BstMBI GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
BstMWI GCNNNNNNNGC 2 cut(s) 266, 971
BstNI CCWGG 1 cut(s) 592
BstNSI RCATGY 1 cut(s) 513
BstSCI CCNGG 3 cut(s) 590, 681, 682
BstSLI GKGCMC 2 cut(s) 47, 1109
BstUI CGCG 1 cut(s) 41
BstV2I GAAGAC 1 cut(s) 101
Bsu15I ATCGAT 1 cut(s) 544
BsuI GTATCC 1 cut(s) 1218
BsuRI GGCC 4 cut(s) 74, 566, 590, 1097
BsuTUI ATCGAT 1 cut(s) 544
BtgI CCRYGG 3 cut(s) 55, 177, 1200
BtsCI GGATG 2 cut(s) 65, 173
BtsI GCAGTG 1 cut(s) 777
BtsIMutI CAGTG 3 cut(s) 584, 657, 777
Cac8I GCNNGC 2 cut(s) 43, 1218
CfoI GCGC 2 cut(s) 104, 145
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 3 cut(s) 73, 651, 1095
Cfr9I CCCGGG 1 cut(s) 682
ClaI ATCGAT 1 cut(s) 544
CspCI CAANNNNNGTGG 2 cut(s) 1155, 1190
CviAII CATG 5 cut(s) 56, 178, 245, 510, 962
DpnI GATC 8 cut(s) 378, 401, 519, 631, 820, 829, 886, 1152
DpnII GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
DraI TTTAAA 1 cut(s) 561
EaeI YGGCCR 1 cut(s) 588
Eam1104I CTCTTC 2 cut(s) 727, 948
EarI CTCTTC 2 cut(s) 727, 948
Eco130I CCWWGG 2 cut(s) 55, 177
Eco47I GGWCC 1 cut(s) 651
Eco47III AGCGCT 2 cut(s) 103, 144
Eco57I CTGAAG 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 682
EcoRII CCWGG 1 cut(s) 590
EcoT14I CCWWGG 2 cut(s) 55, 177
ErhI CCWWGG 2 cut(s) 55, 177
Esp3I CGTCTC 1 cut(s) 126
FaeI CATG 5 cut(s) 59, 181, 248, 513, 965
FaqI GGGAC 1 cut(s) 374
FatI CATG 5 cut(s) 55, 177, 244, 509, 961
FauI CCCGC 1 cut(s) 412
FbaI TGATCA 1 cut(s) 399
Fnu4HI GCNGC 1 cut(s) 24
FokI GGATG 2 cut(s) 72, 160
Fsp4HI GCNGC 1 cut(s) 24
FspBI CTAG 1 cut(s) 1217
GlaI GCGC 2 cut(s) 103, 144
GluI GCNGC 1 cut(s) 24
HaeII RGCGCY 2 cut(s) 105, 146
HaeIII GGCC 4 cut(s) 74, 566, 590, 1097
HapII CCGG 2 cut(s) 161, 683
HhaI GCGC 2 cut(s) 104, 145
Hin1II CATG 5 cut(s) 59, 181, 248, 513, 965
Hin6I GCGC 2 cut(s) 102, 143
HinP1I GCGC 2 cut(s) 102, 143
HincII GTYRAC 2 cut(s) 714, 1164
HindII GTYRAC 2 cut(s) 714, 1164
HindIII AAGCTT 1 cut(s) 1088
HinfI GANTC 7 cut(s) 249, 301, 598, 665, 813, 926, 985
HpaI GTTAAC 1 cut(s) 714
HpaII CCGG 2 cut(s) 161, 683
HphI GGTGA 2 cut(s) 674, 1189
Hpy166II GTNNAC 4 cut(s) 45, 714, 1107, 1164
Hpy188I TCNGA 9 cut(s) 190, 319, 376, 474, 808, 818, 827, 874, 884
Hpy188III TCNNGA 6 cut(s) 280, 365, 380, 515, 577, 906
Hpy8I GTNNAC 4 cut(s) 45, 714, 1107, 1164
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 3 cut(s) 492, 739, 1183
HpyCH4IV ACGT 1 cut(s) 444
HpyCH4V TGCA 7 cut(s) 45, 68, 332, 704, 965, 974, 1107
HpyF10VI GCNNNNNNNGC 2 cut(s) 266, 971
HpySE526I ACGT 1 cut(s) 444
Hsp92II CATG 5 cut(s) 59, 181, 248, 513, 965
HspAI GCGC 2 cut(s) 102, 143
Ksp22I TGATCA 1 cut(s) 399
KspAI GTTAAC 1 cut(s) 714
Kzo9I GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
LguI GCTCTTC 1 cut(s) 948
LmnI GCTCC 2 cut(s) 150, 785
LweI GCATC 3 cut(s) 468, 713, 758
MaeI CTAG 1 cut(s) 1217
MaeII ACGT 1 cut(s) 444
MaeIII GTNAC 4 cut(s) 285, 774, 982, 1195
MalI GATC 8 cut(s) 378, 401, 519, 631, 820, 829, 886, 1152
MboI GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
MhlI GDGCHC 3 cut(s) 47, 960, 1109
MlsI TGGCCA 1 cut(s) 590
MluCI AATT 7 cut(s) 197, 462, 856, 865, 901, 934, 1245
MluNI TGGCCA 1 cut(s) 590
MlyI GAGTC 1 cut(s) 979
MmeI TCCRAC 3 cut(s) 172, 342, 497
MnlI CCTC 7 cut(s) 45, 75, 796, 855, 1143, 1202, 1239
Mox20I TGGCCA 1 cut(s) 590
MscI TGGCCA 1 cut(s) 590
MseI TTAA 5 cut(s) 495, 560, 647, 713, 933
MslI CAYNNNNRTG 2 cut(s) 384, 1112
Msp20I TGGCCA 1 cut(s) 590
MspCI CTTAAG 1 cut(s) 494
MspI CCGG 2 cut(s) 161, 683
MspR9I CCNGG 3 cut(s) 592, 683, 684
Mva1269I GAATGC 1 cut(s) 1218
MvaI CCWGG 1 cut(s) 592
MvnI CGCG 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 266, 971
NciI CCSGG 2 cut(s) 683, 684
NcoI CCATGG 2 cut(s) 55, 177
NdeII GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
NheI GCTAGC 1 cut(s) 1216
NlaIII CATG 5 cut(s) 59, 181, 248, 513, 965
NlaIV GGNNCC 1 cut(s) 159
NmuCI GTSAC 3 cut(s) 774, 982, 1195
NspI RCATGY 1 cut(s) 513
NspV TTCGAA 1 cut(s) 938
PciI ACATGT 1 cut(s) 509
PciSI GCTCTTC 1 cut(s) 948
PctI GAATGC 1 cut(s) 1218
PfeI GAWTC 6 cut(s) 249, 301, 598, 665, 813, 926
PflMI CCANNNNNTGG 1 cut(s) 154
PkrI GCNGC 1 cut(s) 25
PleI GAGTC 1 cut(s) 979
PpsI GAGTC 1 cut(s) 979
PscI ACATGT 1 cut(s) 509
PshBI ATTAAT 1 cut(s) 933
Psp6I CCWGG 1 cut(s) 590
PspGI CCWGG 1 cut(s) 590
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 3 cut(s) 73, 651, 1095
RseI CAYNNNNRTG 2 cut(s) 384, 1112
SapI GCTCTTC 1 cut(s) 948
SaqAI TTAA 5 cut(s) 495, 560, 647, 713, 933
SatI GCNGC 1 cut(s) 24
Sau3AI GATC 8 cut(s) 376, 399, 517, 629, 818, 827, 884, 1150
Sau96I GGNCC 3 cut(s) 73, 651, 1095
SchI GAGTC 1 cut(s) 979
ScrFI CCNGG 3 cut(s) 592, 683, 684
SduI GDGCHC 3 cut(s) 47, 960, 1109
SfaNI GCATC 3 cut(s) 468, 713, 758
SfuI TTCGAA 1 cut(s) 938
SinI GGWCC 1 cut(s) 651
SmaI CCCGGG 1 cut(s) 684
SmiMI CAYNNNNRTG 2 cut(s) 384, 1112
SmlI CTYRAG 2 cut(s) 363, 494
SmoI CTYRAG 2 cut(s) 363, 494
Sse9I AATT 7 cut(s) 197, 462, 856, 865, 901, 934, 1245
SsiI CCGC 4 cut(s) 9, 21, 24, 419
SspMI CTAG 1 cut(s) 1217
StyD4I CCNGG 3 cut(s) 590, 681, 682
StyI CCWWGG 2 cut(s) 55, 177
TaiI ACGT 1 cut(s) 447
TaqI TCGA 7 cut(s) 544, 576, 893, 905, 938, 1231, 1243
TasI AATT 7 cut(s) 197, 462, 856, 865, 901, 934, 1245
TauI GCSGC 1 cut(s) 26
TfiI GAWTC 6 cut(s) 249, 301, 598, 665, 813, 926
Tru1I TTAA 5 cut(s) 495, 560, 647, 713, 933
Tru9I TTAA 5 cut(s) 495, 560, 647, 713, 933
TscAI CASTG 3 cut(s) 591, 664, 777
TseFI GTSAC 3 cut(s) 774, 982, 1195
Tsp45I GTSAC 3 cut(s) 774, 982, 1195
TspDTI ATGAA 5 cut(s) 116, 278, 516, 726, 753
TspMI CCCGGG 1 cut(s) 682
TspRI CASTG 3 cut(s) 591, 664, 777
Van91I CCANNNNNTGG 1 cut(s) 154
Vha464I CTTAAG 1 cut(s) 494
VneI GTGCAC 2 cut(s) 43, 1105
VpaK11BI GGWCC 1 cut(s) 651
VspI ATTAAT 1 cut(s) 933
XapI RAATTY 2 cut(s) 865, 1245
XceI RCATGY 1 cut(s) 513
XmaI CCCGGG 1 cut(s) 682
XspI CTAG 1 cut(s) 1217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.