Prupe.4G192300_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0016789
Physical Location & Seq
Forward (+)
11572949 .. 11576514
3566 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G192300.1

Sequence Viewer

Length: 1335 bp
ATGTCAACGGCGCCATGCAATGCGAAATCCACGCCGCCCTTCGCCTCCCATGCACTAGCCACTGCCGATGGATATTCTGCTTCGACCCGAGTGAAGAGGGGGAAGAAGAAGAAGAGCGCTATGAATTTCTTCTTGTGTTTTCGATCTGGTGACGTGGCCGGCGGTGGCTCTGACAAAAAGGAACAATGTGGTACGGATGCCTTCACGTATGTTGGTGTGGGAGAAAAGGAAAACGCGGCGTTTCCGAAGGTGGTGTCTGTGAGGTCATCGTTGACGTCTGATAATGAAGGAGATGAAGATAAATGTCGCACTGCTCAACAGAGAAATGAAGGACGAGGTGGACTTTCTCAAGTTTTGAAGGCAGTTTTGTCCAAAACATCACTGGTCAAGAAGAATCAAAAAAGAAAGTTAGGAAAAAATTTTGCAAGCACAACAACAAATGAGAGTTCAATTACTTCAAGTTATAATCAACAATCGCCGGAGGAAGATGTCCCAAGAATGATCTCCAAAACGACTCCATACGATGGCGTAGAGGAAAAGGAAGATGTGGTGCTCCCAAAGGCAATGGTTTCGCCGTTGCCAGATAATGATGAAGTAAATGAAGAGAGAGACGACGGTCGATATCAGACAAATAAAGGACGACGCAAATTATCTCGTTTTTGGAAGGCGGCCTTGTTCGGGACATCTTTGGCCAAGAAGATTCAACTGAGAAAGAAGGGAAAATTTTTGGAAAGAAATGAGAGTACAAAGTATAATCAAGAATTGCCCGAGGAAGAGGACCCAAGAATAGTCTCCAAGACTTCTTCCTCTTTAACTAATAATTCTTCTATCTTCACTAAATCTTCATCAAACTCTTCATCTCGGTCATCAAGCAGGTCCTTGTCCAAGAGAATTAAATCGTTTCGATCAAGTTCGACGCGTAGTTTAAAAGCCAATTTGAGGTATTTGTCCGAAAAAATCATTCGACCAAGTTCCAACAGTTCAAAAGCCAATCCAAAACTTTCCCCTGATAAAGCCAATAAGTCGTTTGAATCTAATGATTCAAAGGGTTTCAAAGAAGGGCATGGACAAAAAGAGCACGAAGTAATGAACATGGAAAGGAACAGAACAAGAGGATGTTACAAAGCGATTACGAGTTTGTGTTTCTTGCTTATGAGTTTGTTGGGTTTGATTTTTTATGGTAAGATGTGTGCCATTCTATGCACTTCCATGTGGCTCTTTAGTGTGCCTCTTTGGACTGGTGTTGGAGATAGTTCAACAAACAAGGTTGACAAGAAGAAATTCATCCTCGGAGGATTGCTACCAAGACACACTCCAACGATTCACCGCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

445

Amino Acids

49.19

Weight (kDa)

9.84

Isoelectric Point (pI)

47.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016789)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21200
malus_domestica MD03G1217100.v1.1 MD11G1234800.v1.1
prunus_persica Prupe.4G192300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0036261
rosa_laevigata RLG00000033682
rosa_multiflora Rmu_sc0000247.1_g000012
rosa_roxburghii Rroxscaffold_1G00044530
rosa_rugosa Rorug05G0154400
rosa_samantha Rh5AG248100 Rh5BG248700 Rh5CG280000 Rh5DG257000
rosa_wichuraiana Rw5G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 465
AatII GACGTC 1 cut(s) 278
Acc36I ACCTGC 1 cut(s) 864
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 1 cut(s) 524
AccII CGCG 2 cut(s) 236, 919
AciI CCGC 5 cut(s) 35, 162, 236, 668, 1327
AcoI YGGCCR 2 cut(s) 156, 690
AcsI RAATTY 4 cut(s) 124, 418, 722, 1280
AcyI GRCGYC 2 cut(s) 11, 275
AfaI GTAC 2 cut(s) 193, 745
AfeI AGCGCT 1 cut(s) 118
AfiI CCNNNNNNNGG 3 cut(s) 524, 678, 939
AflIII ACRYGT 1 cut(s) 917
AgsI TTSAA 9 cut(s) 358, 450, 459, 704, 984, 1031, 1044, 1054, 1257
AjiI CACGTC 1 cut(s) 154
Alw21I GWGCWC 2 cut(s) 555, 1080
Alw26I GTCTC 2 cut(s) 603, 796
Ama87I CYCGRG 2 cut(s) 87, 767
Aor51HI AGCGCT 1 cut(s) 118
AoxI GGCC 3 cut(s) 156, 669, 690
ApoI RAATTY 4 cut(s) 124, 418, 722, 1280
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
Asp700I GAANNNNTTC 2 cut(s) 128, 1280
AspLEI GCGC 2 cut(s) 13, 119
AspS9I GGNCC 2 cut(s) 778, 876
AsuHPI GGTGA 2 cut(s) 161, 1316
AvaI CYCGRG 2 cut(s) 87, 767
AvaII GGWCC 2 cut(s) 778, 876
BalI TGGCCA 1 cut(s) 692
BanI GGYRCC 1 cut(s) 10
Bbv12I GWGCWC 2 cut(s) 555, 1080
BccI CCATC 2 cut(s) 62, 518
BceAI ACGGC 2 cut(s) 24, 559
BcgI CGANNNNNNTGC 2 cut(s) 552, 586
BcoDI GTCTC 2 cut(s) 603, 796
BfaI CTAG 1 cut(s) 56
BfoI RGCGCY 2 cut(s) 14, 120
BfuAI ACCTGC 1 cut(s) 864
BisI GCNGC 3 cut(s) 35, 237, 669
BlsI GCNGC 3 cut(s) 36, 238, 670
Bme18I GGWCC 2 cut(s) 778, 876
BmeT110I CYCGRG 2 cut(s) 87, 767
BmgBI CACGTC 1 cut(s) 154
BmgT120I GGNCC 2 cut(s) 778, 876
BmiI GGNNCC 2 cut(s) 12, 780
BmsI GCATC 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 615
BpuEI CTTGAG 1 cut(s) 333
BsaAI YACGTR 1 cut(s) 207
BsaHI GRCGYC 2 cut(s) 11, 275
BsaJI CCNNGG 2 cut(s) 768, 1288
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 678, 939
Bse118I RCCGGY 1 cut(s) 158
Bse1I ACTGG 2 cut(s) 387, 1243
Bse3DI GCAATG 2 cut(s) 25, 570
BseDI CCNNGG 2 cut(s) 768, 1288
BseGI GGATG 3 cut(s) 202, 1121, 1284
BseLI CCNNNNNNNGG 3 cut(s) 524, 678, 939
BseMI GCAATG 2 cut(s) 25, 570
BseMII CTCAG 1 cut(s) 698
BseNI ACTGG 2 cut(s) 387, 1243
Bsh1236I CGCG 2 cut(s) 236, 919
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 3 cut(s) 158, 671, 692
BshNI GGYRCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 2 cut(s) 555, 1080
BsiHKCI CYCGRG 2 cut(s) 87, 767
BsiSI CCGG 2 cut(s) 159, 479
BslFI GGGAC 2 cut(s) 476, 694
BslI CCNNNNNNNGG 3 cut(s) 524, 678, 939
BsmAI GTCTC 2 cut(s) 603, 796
BsmBI CGTCTC 1 cut(s) 603
BsmFI GGGAC 2 cut(s) 476, 694
BsnI GGCC 3 cut(s) 158, 671, 692
BsoBI CYCGRG 2 cut(s) 87, 767
Bsp1286I GDGCHC 2 cut(s) 555, 1080
Bsp143I GATC 3 cut(s) 143, 501, 905
BspACI CCGC 5 cut(s) 35, 162, 236, 668, 1327
BspANI GGCC 3 cut(s) 158, 671, 692
BspCNI CTCAG 1 cut(s) 699
BspFNI CGCG 2 cut(s) 236, 919
BspLI GGNNCC 2 cut(s) 12, 780
BspMI ACCTGC 1 cut(s) 864
BspQI GCTCTTC 1 cut(s) 107
BspT107I GGYRCC 1 cut(s) 10
BsrDI GCAATG 2 cut(s) 25, 570
BsrFI RCCGGY 1 cut(s) 158
BsrI ACTGG 2 cut(s) 387, 1243
BssAI RCCGGY 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 768, 1288
BssMI GATC 3 cut(s) 143, 501, 905
BssNI GRCGYC 2 cut(s) 11, 275
Bst4CI ACNGT 2 cut(s) 617, 980
Bst6I CTCTTC 5 cut(s) 89, 107, 597, 768, 859
BstACI GRCGYC 2 cut(s) 11, 275
BstBAI YACGTR 1 cut(s) 207
BstC8I GCNNGC 2 cut(s) 160, 427
BstDEI CTNAG 1 cut(s) 707
BstF5I GGATG 3 cut(s) 202, 1121, 1284
BstFNI CGCG 2 cut(s) 236, 919
BstH2I RGCGCY 2 cut(s) 14, 120
BstHHI GCGC 2 cut(s) 13, 119
BstKTI GATC 3 cut(s) 146, 504, 908
BstMAI GTCTC 2 cut(s) 603, 796
BstMBI GATC 3 cut(s) 143, 501, 905
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstPAI GACNNNNGTC 1 cut(s) 615
BstUI CGCG 2 cut(s) 236, 919
BsuRI GGCC 3 cut(s) 158, 671, 692
BtrI CACGTC 1 cut(s) 154
BtsCI GGATG 3 cut(s) 202, 1121, 1284
BtsI GCAGTG 2 cut(s) 60, 309
BtsIMutI CAGTG 3 cut(s) 60, 309, 380
BveI ACCTGC 1 cut(s) 864
Cac8I GCNNGC 2 cut(s) 160, 427
CfoI GCGC 2 cut(s) 13, 119
Cfr10I RCCGGY 1 cut(s) 158
Cfr13I GGNCC 2 cut(s) 778, 876
CseI GACGC 2 cut(s) 651, 925
Csp6I GTAC 2 cut(s) 192, 744
CviAII CATG 5 cut(s) 15, 50, 1064, 1093, 1210
CviJI RGCY 9 cut(s) 59, 158, 168, 671, 692, 932, 989, 1016, 1216
CviKI_1 RGCY 9 cut(s) 59, 158, 168, 671, 692, 932, 989, 1016, 1216
CviQI GTAC 2 cut(s) 192, 744
DdeI CTNAG 1 cut(s) 707
DinI GGCGCC 1 cut(s) 12
DpnI GATC 3 cut(s) 145, 503, 907
DpnII GATC 3 cut(s) 143, 501, 905
DraI TTTAAA 1 cut(s) 927
EaeI YGGCCR 2 cut(s) 156, 690
Eam1104I CTCTTC 5 cut(s) 89, 107, 597, 768, 859
EarI CTCTTC 5 cut(s) 89, 107, 597, 768, 859
Eco32I GATATC 1 cut(s) 623
Eco47I GGWCC 2 cut(s) 778, 876
Eco47III AGCGCT 1 cut(s) 118
Eco88I CYCGRG 2 cut(s) 87, 767
EcoO109I RGGNCCY 2 cut(s) 778, 876
EcoRV GATATC 1 cut(s) 623
EgeI GGCGCC 1 cut(s) 12
EheI GGCGCC 1 cut(s) 12
Esp3I CGTCTC 1 cut(s) 603
FaeI CATG 5 cut(s) 18, 53, 1067, 1096, 1213
FalI AAGNNNNNCTT 2 cut(s) 656, 688
FaqI GGGAC 2 cut(s) 476, 694
FatI CATG 5 cut(s) 14, 49, 1063, 1092, 1209
Fnu4HI GCNGC 3 cut(s) 35, 237, 669
FokI GGATG 3 cut(s) 209, 1128, 1271
Fsp4HI GCNGC 3 cut(s) 35, 237, 669
FspBI CTAG 1 cut(s) 56
GlaI GCGC 2 cut(s) 12, 118
GluI GCNGC 3 cut(s) 35, 237, 669
HaeII RGCGCY 2 cut(s) 14, 120
HaeIII GGCC 3 cut(s) 158, 671, 692
HapII CCGG 2 cut(s) 159, 479
HgaI GACGC 2 cut(s) 651, 925
HhaI GCGC 2 cut(s) 13, 119
Hin1I GRCGYC 2 cut(s) 11, 275
Hin1II CATG 5 cut(s) 18, 53, 1067, 1096, 1213
Hin6I GCGC 2 cut(s) 11, 117
HinP1I GCGC 2 cut(s) 11, 117
HincII GTYRAC 3 cut(s) 6, 273, 1270
HindII GTYRAC 3 cut(s) 6, 273, 1270
HinfI GANTC 6 cut(s) 394, 514, 700, 1031, 1040, 1321
HpaII CCGG 2 cut(s) 159, 479
HphI GGTGA 2 cut(s) 161, 1316
Hpy166II GTNNAC 4 cut(s) 6, 273, 341, 1270
Hpy188I TCNGA 6 cut(s) 172, 246, 280, 627, 952, 1292
Hpy188III TCNNGA 3 cut(s) 388, 679, 758
Hpy8I GTNNAC 4 cut(s) 6, 273, 341, 1270
Hpy99I CGWCG 3 cut(s) 617, 645, 919
HpyAV CCTTC 9 cut(s) 49, 211, 241, 281, 323, 352, 658, 709, 1052
HpyCH4III ACNGT 2 cut(s) 617, 980
HpyCH4IV ACGT 3 cut(s) 153, 206, 275
HpyCH4V TGCA 4 cut(s) 18, 53, 425, 1203
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 707
HpySE526I ACGT 3 cut(s) 153, 206, 275
Hsp92I GRCGYC 2 cut(s) 11, 275
Hsp92II CATG 5 cut(s) 18, 53, 1067, 1096, 1213
HspAI GCGC 2 cut(s) 11, 117
KasI GGCGCC 1 cut(s) 10
KroI GCCGGC 1 cut(s) 158
KroNI GCCGGC 1 cut(s) 160
Kzo9I GATC 3 cut(s) 143, 501, 905
LguI GCTCTTC 1 cut(s) 107
LmnI GCTCC 1 cut(s) 558
LpnPI CCDG 8 cut(s) 132, 172, 368, 492, 594, 859, 1020, 1224
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 56
MaeII ACGT 3 cut(s) 153, 206, 275
MaeIII GTNAC 2 cut(s) 149, 1118
MalI GATC 3 cut(s) 145, 503, 907
MboI GATC 3 cut(s) 143, 501, 905
MhlI GDGCHC 2 cut(s) 555, 1080
MlsI TGGCCA 1 cut(s) 692
MluI ACGCGT 1 cut(s) 917
MluNI TGGCCA 1 cut(s) 692
Mly113I GGCGCC 1 cut(s) 11
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 2 cut(s) 999, 1225
Mox20I TGGCCA 1 cut(s) 692
MroNI GCCGGC 1 cut(s) 158
MroXI GAANNNNTTC 2 cut(s) 128, 1280
MscI TGGCCA 1 cut(s) 692
MseI TTAA 3 cut(s) 812, 894, 926
MslI CAYNNNNRTG 1 cut(s) 1208
Msp20I TGGCCA 1 cut(s) 692
MspI CCGG 2 cut(s) 159, 479
MvnI CGCG 2 cut(s) 236, 919
MwoI GCNNNNNNNGC 1 cut(s) 50
NaeI GCCGGC 1 cut(s) 160
NarI GGCGCC 1 cut(s) 11
NdeII GATC 3 cut(s) 143, 501, 905
NgoMIV GCCGGC 1 cut(s) 158
NlaIII CATG 5 cut(s) 18, 53, 1067, 1096, 1213
NlaIV GGNNCC 2 cut(s) 12, 780
NmuCI GTSAC 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 107
PdiI GCCGGC 1 cut(s) 160
PdmI GAANNNNTTC 2 cut(s) 128, 1280
PfeI GAWTC 5 cut(s) 394, 700, 1031, 1040, 1321
PflMI CCANNNNNTGG 1 cut(s) 524
PkrI GCNGC 3 cut(s) 36, 238, 670
PleI GAGTC 1 cut(s) 508
PluTI GGCGCC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 508
Ppu21I YACGTR 1 cut(s) 207
PpuMI RGGWCCY 2 cut(s) 778, 876
PshAI GACNNNNGTC 1 cut(s) 615
PsiI TTATAA 1 cut(s) 465
Psp5II RGGWCCY 2 cut(s) 778, 876
PspN4I GGNNCC 2 cut(s) 12, 780
PspPI GGNCC 2 cut(s) 778, 876
PspPPI RGGWCCY 2 cut(s) 778, 876
RsaI GTAC 2 cut(s) 193, 745
RsaNI GTAC 2 cut(s) 192, 744
RseI CAYNNNNRTG 1 cut(s) 1208
SapI GCTCTTC 1 cut(s) 107
SaqAI TTAA 3 cut(s) 812, 894, 926
SatI GCNGC 3 cut(s) 35, 237, 669
Sau3AI GATC 3 cut(s) 143, 501, 905
Sau96I GGNCC 2 cut(s) 778, 876
SchI GAGTC 1 cut(s) 508
SduI GDGCHC 2 cut(s) 555, 1080
SetI ASST 9 cut(s) 156, 209, 252, 266, 278, 340, 878, 944, 1269
SfaNI GCATC 1 cut(s) 187
SfoI GGCGCC 1 cut(s) 12
SinI GGWCC 2 cut(s) 778, 876
SmiMI CAYNNNNRTG 1 cut(s) 1208
SmlI CTYRAG 1 cut(s) 348
SmoI CTYRAG 1 cut(s) 348
SsiI CCGC 5 cut(s) 35, 162, 236, 668, 1327
SspDI GGCGCC 1 cut(s) 10
SspMI CTAG 1 cut(s) 56
TaaI ACNGT 2 cut(s) 617, 980
TaiI ACGT 3 cut(s) 156, 209, 278
TaqI TCGA 6 cut(s) 83, 142, 619, 904, 914, 964
TaqII GACCGA 1 cut(s) 852
TatI WGTACW 1 cut(s) 743
TauI GCSGC 3 cut(s) 37, 239, 671
TfiI GAWTC 5 cut(s) 394, 700, 1031, 1040, 1321
Tru1I TTAA 3 cut(s) 812, 894, 926
Tru9I TTAA 3 cut(s) 812, 894, 926
TscAI CASTG 3 cut(s) 67, 316, 387
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 209
TspRI CASTG 3 cut(s) 67, 316, 387
Van91I CCANNNNNTGG 1 cut(s) 524
VpaK11BI GGWCC 2 cut(s) 778, 876
XapI RAATTY 4 cut(s) 124, 418, 722, 1280
XcmI CCANNNNNNNNNTGG 1 cut(s) 379
XmnI GAANNNNTTC 2 cut(s) 128, 1280
XspI CTAG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 276
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.