Rmu_sc0000247.1_g000012

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000247.1
OG0016789
Physical Location & Seq
Forward (+)
63103 .. 65823
2721 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000247.1_g000012.1.cds

Sequence Viewer

Length: 1320 bp
atggatttcgaaaaggacaccgccacccttcctcttgcgtgcactgcccatggatgtcctgcaaaggcccaagtgaggcaaaagaagaagaagacgagcgctgtcaagttcttcctatgctttcaaagagacgatgtagtgtttccgtgtgtggtgccgatgcccgtgccggcggtttcgtcatccatggcgacatcggatagtgatttggatgtaggaaaatgcaacaatcaacaaaggaagccagaacggcatggattctttcatgttttgaaagcaattttgttcaagatgttattggtcaagaagattcaacaaaagaaatcagacagcagttttgcaaatattccaacaaaggagagttcaattacttcaaggcacactcaagaatggtcagatcacaaagatgtcccaaaaatgatcaccaaaacaacttcagggggtaagaccgttttcacttacgtcaaagagaaggaagaggttgtctttccgacgatgccttcatcgtggcttaaaaatgaagaaacatgtcaagatcaatggatcaacaaaggacgacgtagattatctcacattttaaaggccgtcttgttcgagacatcactggctaggaagattcaagcaagaaagttggggaaaaaatacgaatcaaatacgagtttaaggtctagcactggagaatcgtgcgaggaagataatcatgacctgggaaagtctgcgtcttcgttaactaactcttctgtcttcacttcatctttattgaactctacatcaagttcatcaacagtgtcacgctccacatcacactcgaggtctttatccgagcgaatcaaatctttccgatcaatctcatcaagcaatctaaaagccaatttgaggaacttgtccgacaaaattcgatcaaactccaaccatttgaagtccaattcgagaaacaagatgtcgttggaatccattaattcgagtggtttgaaagaagagcaacatgcacattttaatgatgacgtgactgacactggaaagaacaataagaaaggagggtgttatcgttcagcttcgggcctttgcttcttgctaatgagtctagtggggttgattttttatgctcggctcggggcgcgacagagccgcggggcctgtcggacggactccaggggtcggacgaactggtctgcagtcggtgaagtcgccggcgacgtggttgcagtgttgcccagaaacctgcaactccaacctcctctgacctcaaacgctgcccagaaccgtccgggatgcctctggcctccgtccgccaagccccgagccgccgtcgctgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

48.45

Weight (kDa)

9.88

Isoelectric Point (pI)

56.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016789)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21200
malus_domestica MD03G1217100.v1.1 MD11G1234800.v1.1
prunus_persica Prupe.4G192300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0036261
rosa_laevigata RLG00000033682
rosa_multiflora Rmu_sc0000247.1_g000012
rosa_roxburghii Rroxscaffold_1G00044530
rosa_rugosa Rorug05G0154400
rosa_samantha Rh5AG248100 Rh5BG248700 Rh5CG280000 Rh5DG257000
rosa_wichuraiana Rw5G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1168
Acc36I ACCTGC 1 cut(s) 1230
AccB1I GGYRCC 1 cut(s) 154
AccII CGCG 2 cut(s) 1120, 1131
AciI CCGC 6 cut(s) 21, 173, 1129, 1131, 1290, 1305
AclWI GGATC 1 cut(s) 551
AcsI RAATTY 1 cut(s) 894
AcuI CTGAAG 1 cut(s) 420
AfeI AGCGCT 1 cut(s) 100
AfiI CCNNNNNNNGG 3 cut(s) 75, 876, 1158
AflIII ACRYGT 1 cut(s) 527
AjiI CACGTC 2 cut(s) 1006, 1198
AjnI CCWGG 2 cut(s) 705, 1151
AluBI AGCT 1 cut(s) 1055
AluI AGCT 1 cut(s) 1055
Alw21I GWGCWC 1 cut(s) 44
Alw26I GTCTC 2 cut(s) 123, 590
Alw44I GTGCAC 1 cut(s) 40
AlwI GGATC 1 cut(s) 551
Ama87I CYCGRG 3 cut(s) 808, 1112, 1299
Aor51HI AGCGCT 1 cut(s) 100
AoxI GGCC 5 cut(s) 66, 582, 1060, 1134, 1280
ApaLI GTGCAC 1 cut(s) 40
ApeKI GCWGC 2 cut(s) 1253, 1313
ApoI RAATTY 1 cut(s) 894
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AseI ATTAAT 1 cut(s) 957
AspLEI GCGC 2 cut(s) 101, 1120
AspS9I GGNCC 3 cut(s) 67, 1060, 1134
AsuC2I CCSGG 1 cut(s) 1269
AsuHPI GGTGA 2 cut(s) 415, 1193
AsuII TTCGAA 1 cut(s) 9
AvaI CYCGRG 3 cut(s) 808, 1112, 1299
BaeGI GKGCMC 1 cut(s) 44
BanI GGYRCC 1 cut(s) 154
BbsI GAAGAC 3 cut(s) 98, 714, 736
Bbv12I GWGCWC 1 cut(s) 44
BbvI GCAGC 2 cut(s) 1240, 1300
BceAI ACGGC 3 cut(s) 266, 569, 1292
BcgI CGANNNNNNTGC 4 cut(s) 148, 182, 1184, 1218
BciT130I CCWGG 2 cut(s) 707, 1153
BclI TGATCA 1 cut(s) 420
BcnI CCSGG 1 cut(s) 1269
BcoDI GTCTC 2 cut(s) 123, 590
BfaI CTAG 4 cut(s) 609, 669, 1085, 1318
BfmI CTRYAG 1 cut(s) 1173
BfoI RGCGCY 1 cut(s) 102
BfuAI ACCTGC 1 cut(s) 1230
BglI GCCNNNNNGGC 1 cut(s) 250
BisI GCNGC 4 cut(s) 1129, 1254, 1305, 1314
BlsI GCNGC 4 cut(s) 1130, 1255, 1306, 1315
Bme1390I CCNGG 3 cut(s) 707, 1153, 1269
BmeT110I CYCGRG 3 cut(s) 808, 1112, 1299
BmgBI CACGTC 2 cut(s) 1006, 1198
BmgT120I GGNCC 3 cut(s) 67, 1060, 1134
BmiI GGNNCC 2 cut(s) 156, 1135
BmrFI CCNGG 3 cut(s) 707, 1153, 1269
BmsI GCATC 3 cut(s) 150, 486, 1262
BpiI GAAGAC 3 cut(s) 98, 714, 736
BpmI CTGGAG 2 cut(s) 696, 1135
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 1 cut(s) 369
BpuMI CCSGG 1 cut(s) 1269
BsaJI CCNNGG 5 cut(s) 49, 186, 706, 1129, 1152
Bsc4I CCNNNNNNNGG 3 cut(s) 75, 876, 1158
Bse118I RCCGGY 2 cut(s) 169, 1190
Bse1I ACTGG 4 cut(s) 609, 679, 1021, 1172
BseBI CCWGG 2 cut(s) 707, 1153
BseDI CCNNGG 5 cut(s) 49, 186, 706, 1129, 1152
BseGI GGATG 4 cut(s) 59, 182, 217, 1277
BseLI CCNNNNNNNGG 3 cut(s) 75, 876, 1158
BseNI ACTGG 4 cut(s) 609, 679, 1021, 1172
BseRI GAGGAG 1 cut(s) 1227
BseSI GKGCMC 1 cut(s) 44
BseXI GCAGC 2 cut(s) 1240, 1300
Bsh1236I CGCG 2 cut(s) 1120, 1131
BshFI GGCC 5 cut(s) 68, 584, 1062, 1136, 1282
BshNI GGYRCC 1 cut(s) 154
BsiHKAI GWGCWC 1 cut(s) 44
BsiHKCI CYCGRG 3 cut(s) 808, 1112, 1299
BsiSI CCGG 3 cut(s) 170, 1191, 1268
BslFI GGGAC 1 cut(s) 395
BslI CCNNNNNNNGG 3 cut(s) 75, 876, 1158
BsmAI GTCTC 2 cut(s) 123, 590
BsmBI CGTCTC 1 cut(s) 123
BsmFI GGGAC 1 cut(s) 395
BsnI GGCC 5 cut(s) 68, 584, 1062, 1136, 1282
BsoBI CYCGRG 3 cut(s) 808, 1112, 1299
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 6 cut(s) 397, 420, 535, 543, 842, 899
Bsp19I CCATGG 2 cut(s) 49, 186
BspACI CCGC 6 cut(s) 21, 173, 1129, 1131, 1290, 1305
BspANI GGCC 5 cut(s) 68, 584, 1062, 1136, 1282
BspFNI CGCG 2 cut(s) 1120, 1131
BspHI TCATGA 1 cut(s) 700
BspLI GGNNCC 2 cut(s) 156, 1135
BspMAI CTGCAG 1 cut(s) 1177
BspMI ACCTGC 1 cut(s) 1230
BspPI GGATC 1 cut(s) 551
BspQI GCTCTTC 1 cut(s) 972
BspT104I TTCGAA 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 154
BsrFI RCCGGY 2 cut(s) 169, 1190
BsrI ACTGG 4 cut(s) 609, 679, 1021, 1172
BssAI RCCGGY 2 cut(s) 169, 1190
BssECI CCNNGG 5 cut(s) 49, 186, 706, 1129, 1152
BssMI GATC 6 cut(s) 397, 420, 535, 543, 842, 899
BssT1I CCWWGG 2 cut(s) 49, 186
Bst2UI CCWGG 2 cut(s) 707, 1153
Bst4CI ACNGT 3 cut(s) 451, 787, 1265
Bst6I CTCTTC 3 cut(s) 471, 742, 972
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 3 cut(s) 40, 171, 1192
BstDSI CCRYGG 3 cut(s) 49, 186, 1129
BstF5I GGATG 4 cut(s) 59, 182, 217, 1277
BstFNI CGCG 2 cut(s) 1120, 1131
BstH2I RGCGCY 1 cut(s) 102
BstHHI GCGC 2 cut(s) 101, 1120
BstKTI GATC 6 cut(s) 400, 423, 538, 546, 845, 902
BstMAI GTCTC 2 cut(s) 123, 590
BstMBI GATC 6 cut(s) 397, 420, 535, 543, 842, 899
BstMWI GCNNNNNNNGC 5 cut(s) 44, 250, 1117, 1310, 1313
BstNI CCWGG 2 cut(s) 707, 1153
BstNSI RCATGY 2 cut(s) 531, 989
BstSCI CCNGG 3 cut(s) 705, 1151, 1267
BstSFI CTRYAG 1 cut(s) 1173
BstSLI GKGCMC 1 cut(s) 44
BstUI CGCG 2 cut(s) 1120, 1131
BstV1I GCAGC 2 cut(s) 1240, 1300
BstV2I GAAGAC 3 cut(s) 98, 714, 736
BsuRI GGCC 5 cut(s) 68, 584, 1062, 1136, 1282
BtgI CCRYGG 3 cut(s) 49, 186, 1129
BtrI CACGTC 2 cut(s) 1006, 1198
BtsCI GGATG 4 cut(s) 59, 182, 217, 1277
BtsI GCAGTG 2 cut(s) 42, 1212
BtsIMutI CAGTG 6 cut(s) 42, 602, 672, 792, 1014, 1212
BveI ACCTGC 1 cut(s) 1230
Cac8I GCNNGC 3 cut(s) 40, 171, 1192
CciI TCATGA 1 cut(s) 700
CfoI GCGC 2 cut(s) 101, 1120
Cfr10I RCCGGY 2 cut(s) 169, 1190
Cfr13I GGNCC 3 cut(s) 67, 1060, 1134
Cfr42I CCGCGG 1 cut(s) 1132
CseI GACGC 1 cut(s) 708
CviAII CATG 7 cut(s) 50, 187, 254, 266, 528, 701, 986
DpnI GATC 6 cut(s) 399, 422, 537, 545, 844, 901
DpnII GATC 6 cut(s) 397, 420, 535, 543, 842, 899
DraI TTTAAA 1 cut(s) 579
DrdI GACNNNNNNGTC 1 cut(s) 1168
DseDI GACNNNNNNGTC 1 cut(s) 1168
Eam1104I CTCTTC 3 cut(s) 471, 742, 972
EarI CTCTTC 3 cut(s) 471, 742, 972
EciI GGCGGA 1 cut(s) 1279
Eco130I CCWWGG 2 cut(s) 49, 186
Eco47III AGCGCT 1 cut(s) 100
Eco57I CTGAAG 1 cut(s) 420
Eco88I CYCGRG 3 cut(s) 808, 1112, 1299
EcoO109I RGGNCCY 1 cut(s) 1134
EcoRII CCWGG 2 cut(s) 705, 1151
EcoT14I CCWWGG 2 cut(s) 49, 186
ErhI CCWWGG 2 cut(s) 49, 186
Esp3I CGTCTC 1 cut(s) 123
FaeI CATG 7 cut(s) 53, 190, 257, 269, 531, 704, 989
FaiI YATR 9 cut(s) 51, 118, 188, 255, 267, 529, 702, 987, 1104
FalI AAGNNNNNCTT 2 cut(s) 572, 604
FaqI GGGAC 1 cut(s) 395
FatI CATG 7 cut(s) 49, 186, 253, 265, 527, 700, 985
FauI CCCGC 1 cut(s) 1124
FbaI TGATCA 1 cut(s) 420
Fnu4HI GCNGC 4 cut(s) 1129, 1254, 1305, 1314
FokI GGATG 4 cut(s) 66, 169, 224, 1284
Fsp4HI GCNGC 4 cut(s) 1129, 1254, 1305, 1314
FspBI CTAG 4 cut(s) 609, 669, 1085, 1318
GlaI GCGC 2 cut(s) 100, 1119
GluI GCNGC 4 cut(s) 1129, 1254, 1305, 1314
GsuI CTGGAG 2 cut(s) 696, 1135
HaeII RGCGCY 1 cut(s) 102
HaeIII GGCC 5 cut(s) 68, 584, 1062, 1136, 1282
HapII CCGG 3 cut(s) 170, 1191, 1268
HgaI GACGC 1 cut(s) 708
HhaI GCGC 2 cut(s) 101, 1120
Hin1II CATG 7 cut(s) 53, 190, 257, 269, 531, 704, 989
Hin6I GCGC 2 cut(s) 99, 1118
HinP1I GCGC 2 cut(s) 99, 1118
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 9 cut(s) 258, 310, 616, 647, 680, 828, 950, 1081, 1148
HpaI GTTAAC 1 cut(s) 729
HpaII CCGG 3 cut(s) 170, 1191, 1268
HphI GGTGA 2 cut(s) 415, 1193
Hpy166II GTNNAC 2 cut(s) 42, 729
Hpy188III TCNNGA 7 cut(s) 289, 304, 386, 533, 595, 701, 930
Hpy8I GTNNAC 2 cut(s) 42, 729
Hpy99I CGWCG 4 cut(s) 496, 561, 1199, 1313
HpyAV CCTTC 3 cut(s) 38, 466, 510
HpyCH4III ACNGT 3 cut(s) 451, 787, 1265
HpyCH4IV ACGT 4 cut(s) 462, 559, 1005, 1197
HpyCH4V TGCA 8 cut(s) 42, 62, 225, 341, 989, 1175, 1205, 1225
HpyF10VI GCNNNNNNNGC 5 cut(s) 44, 250, 1117, 1310, 1313
HpySE526I ACGT 4 cut(s) 462, 559, 1005, 1197
Hsp92II CATG 7 cut(s) 53, 190, 257, 269, 531, 704, 989
HspAI GCGC 2 cut(s) 99, 1118
KroI GCCGGC 2 cut(s) 169, 1190
KroNI GCCGGC 2 cut(s) 171, 1192
Ksp22I TGATCA 1 cut(s) 420
KspAI GTTAAC 1 cut(s) 729
KspI CCGCGG 1 cut(s) 1132
Kzo9I GATC 6 cut(s) 397, 420, 535, 543, 842, 899
LguI GCTCTTC 1 cut(s) 972
LmnI GCTCC 1 cut(s) 800
Lsp1109I GCAGC 2 cut(s) 1240, 1300
LweI GCATC 3 cut(s) 150, 486, 1262
MaeI CTAG 4 cut(s) 609, 669, 1085, 1318
MaeII ACGT 4 cut(s) 462, 559, 1005, 1197
MaeIII GTNAC 2 cut(s) 789, 1006
MalI GATC 6 cut(s) 399, 422, 537, 545, 844, 901
MboI GATC 6 cut(s) 397, 420, 535, 543, 842, 899
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 6 cut(s) 279, 366, 871, 894, 925, 958
MlyI GAGTC 2 cut(s) 1090, 1142
MmeI TCCRAC 8 cut(s) 374, 515, 912, 927, 933, 1121, 1139, 1255
MreI CGCCGGCG 1 cut(s) 1190
MroNI GCCGGC 2 cut(s) 169, 1190
MseI TTAA 6 cut(s) 513, 578, 662, 728, 957, 996
MslI CAYNNNNRTG 2 cut(s) 405, 996
MspA1I CMGCKG 1 cut(s) 1131
MspI CCGG 3 cut(s) 170, 1191, 1268
MspR9I CCNGG 3 cut(s) 707, 1153, 1269
MvaI CCWGG 2 cut(s) 707, 1153
MvnI CGCG 2 cut(s) 1120, 1131
MwoI GCNNNNNNNGC 5 cut(s) 44, 250, 1117, 1310, 1313
NaeI GCCGGC 2 cut(s) 171, 1192
NciI CCSGG 1 cut(s) 1269
NcoI CCATGG 2 cut(s) 49, 186
NdeII GATC 6 cut(s) 397, 420, 535, 543, 842, 899
NgoMIV GCCGGC 2 cut(s) 169, 1190
NlaIII CATG 7 cut(s) 53, 190, 257, 269, 531, 704, 989
NlaIV GGNNCC 2 cut(s) 156, 1135
NmeAIII GCCGAG 1 cut(s) 1087
NmuCI GTSAC 2 cut(s) 789, 1006
NspI RCATGY 2 cut(s) 531, 989
NspV TTCGAA 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 808
PagI TCATGA 1 cut(s) 700
PciI ACATGT 1 cut(s) 527
PciSI GCTCTTC 1 cut(s) 972
PcsI WCGNNNNNNNCGW 1 cut(s) 1194
PdiI GCCGGC 2 cut(s) 171, 1192
PfeI GAWTC 7 cut(s) 258, 310, 616, 647, 680, 828, 950
PfoI TCCNGGA 1 cut(s) 1267
PkrI GCNGC 4 cut(s) 1130, 1255, 1306, 1315
PleI GAGTC 2 cut(s) 1089, 1142
PpsI GAGTC 2 cut(s) 1089, 1142
PscI ACATGT 1 cut(s) 527
PshBI ATTAAT 1 cut(s) 957
Psp6I CCWGG 2 cut(s) 705, 1151
PspGI CCWGG 2 cut(s) 705, 1151
PspN4I GGNNCC 2 cut(s) 156, 1135
PspPI GGNCC 3 cut(s) 67, 1060, 1134
PspXI VCTCGAGB 1 cut(s) 808
PstI CTGCAG 1 cut(s) 1177
RseI CAYNNNNRTG 2 cut(s) 405, 996
SacII CCGCGG 1 cut(s) 1132
SapI GCTCTTC 1 cut(s) 972
SaqAI TTAA 6 cut(s) 513, 578, 662, 728, 957, 996
SatI GCNGC 4 cut(s) 1129, 1254, 1305, 1314
Sau3AI GATC 6 cut(s) 397, 420, 535, 543, 842, 899
Sau96I GGNCC 3 cut(s) 67, 1060, 1134
SchI GAGTC 2 cut(s) 1090, 1142
ScrFI CCNGG 3 cut(s) 707, 1153, 1269
SduI GDGCHC 1 cut(s) 44
SfaNI GCATC 3 cut(s) 150, 486, 1262
SfcI CTRYAG 1 cut(s) 1173
Sfr274I CTCGAG 1 cut(s) 808
Sfr303I CCGCGG 1 cut(s) 1132
SfuI TTCGAA 1 cut(s) 9
SgrAI CRCCGGYG 1 cut(s) 1190
SgrBI CCGCGG 1 cut(s) 1132
SlaI CTCGAG 1 cut(s) 808
SmiMI CAYNNNNRTG 2 cut(s) 405, 996
SmlI CTYRAG 2 cut(s) 384, 808
SmoI CTYRAG 2 cut(s) 384, 808
Sse9I AATT 6 cut(s) 279, 366, 871, 894, 925, 958
SsiI CCGC 6 cut(s) 21, 173, 1129, 1131, 1290, 1305
SspI AATATT 1 cut(s) 346
SspMI CTAG 4 cut(s) 609, 669, 1085, 1318
StyD4I CCNGG 3 cut(s) 705, 1151, 1267
StyI CCWWGG 2 cut(s) 49, 186
TaaI ACNGT 3 cut(s) 451, 787, 1265
TaiI ACGT 4 cut(s) 465, 562, 1008, 1200
TaqI TCGA 6 cut(s) 9, 594, 809, 898, 929, 962
TasI AATT 6 cut(s) 279, 366, 871, 894, 925, 958
TauI GCSGC 2 cut(s) 1131, 1307
TfiI GAWTC 7 cut(s) 258, 310, 616, 647, 680, 828, 950
Tru1I TTAA 6 cut(s) 513, 578, 662, 728, 957, 996
Tru9I TTAA 6 cut(s) 513, 578, 662, 728, 957, 996
TscAI CASTG 6 cut(s) 49, 609, 679, 792, 1021, 1212
TseFI GTSAC 2 cut(s) 789, 1006
TseI GCWGC 2 cut(s) 1253, 1313
Tsp45I GTSAC 2 cut(s) 789, 1006
TspDTI ATGAA 5 cut(s) 254, 492, 534, 741, 768
TspGWI ACGGA 3 cut(s) 135, 1160, 1275
TspRI CASTG 6 cut(s) 49, 609, 679, 792, 1021, 1212
VneI GTGCAC 1 cut(s) 40
VspI ATTAAT 1 cut(s) 957
XapI RAATTY 1 cut(s) 894
XceI RCATGY 2 cut(s) 531, 989
XhoI CTCGAG 1 cut(s) 808
XspI CTAG 4 cut(s) 609, 669, 1085, 1318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.