Rroxscaffold_1G00044530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016789
Physical Location & Seq
Reverse (-)
63532797 .. 63534591
1795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00044530.1

Sequence Viewer

Length: 1131 bp
ATGGCAACATCGGATAGTGATTTGGATGTAGGAAAATGCAACAATCAACAAAGGAAGCCAGAACGGCATGGATTCTTTCATGTTTTGAAAGCAATTTTGTTCAAGATGTTATTGGTCAAGAAGATTCAACAAAAGAAATCAGGCAGCATTTTTGCAAATATTCCAACAAAGGAGAGTTCAATTACTTCAGGGCACACTCAAGAAAGGTCAGATCACGAAGATGTCCCAAAAATGATCGCCAAAACAACTTCAGGCGGTAAGACCGTTTTCACTTACGTCAAAGAGAAGGAAGAGGTTGTCTTTCCGACGATGCCTTCATCGTGGCTTAAAAATGAAGAAACATGTCAAGATCAATGGATCAACAAAGGACGACGCAGATTATCTCGCATTTTAAAGGCCGTCTTGTTCGAGACATCACTGGCTAGGAAGATTCAAGCAAGAAAGTTGGGGAAAAAATACGAATCAAATACGAGTTTAAGGTCTAGCACTGGAGAATCGTGCGAGGAAGATAATCATGACCTGGGAAAGTCTGCGTCTTCATTAACTAACTCTTCTGTCTTCACTTCATCTTTATTGAACTCTACATCAAGTTCATCAACAGTGTCACGATCCACGTCACACTCGAGGTCTTTATCCGAGCGAATCAAATCTTTCCGATCAATCTCATCAAGCAATCTAAAAGCCAATTTGAGGAACTTGTCCGACAAAATTCGATCAAACTCCAACCATTTGAAGTCCAATTCGAGAAACAAGATGTCGTTGGAATCCATTAATTCGAGTGGTTTGAAAGAAGAGCAACATGCACATTTTAATGATGATGTGACTGACACTGGAAAGAACAATAAGAAAGGAGGGTGTTATCGTTCAGCTTCGGGTCTTTGCTTCTTGCTAATGAGTCTAGTGGGGTTGATTTTTTATGGTAAGCTTTGTGCCATATTGTGCACTTCAATGTGGCTAGTTTGTGTACCTCTTTGGAGTTTCGGATATCATAACTCATCAACAAACAAGGTGGTTGAGAAGAAGAAAGTCACCATGGGTGGAGGAATGCTAGGGGGACTGCTCGAACTCGAACTCGAATTTTTCAGAGATTCTGGAGAGCTAGCTTGGACTCATTCGAGACAAGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

376

Amino Acids

41.86

Weight (kDa)

9.64

Isoelectric Point (pI)

51.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016789)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21200
malus_domestica MD03G1217100.v1.1 MD11G1234800.v1.1
prunus_persica Prupe.4G192300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0036261
rosa_laevigata RLG00000033682
rosa_multiflora Rmu_sc0000247.1_g000012
rosa_roxburghii Rroxscaffold_1G00044530
rosa_rugosa Rorug05G0154400
rosa_samantha Rh5AG248100 Rh5BG248700 Rh5CG280000 Rh5DG257000
rosa_wichuraiana Rw5G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 255
AclWI GGATC 2 cut(s) 365, 603
AcsI RAATTY 2 cut(s) 708, 1076
AcuI CTGAAG 2 cut(s) 171, 234
AfaI GTAC 1 cut(s) 966
AfiI CCNNNNNNNGG 1 cut(s) 690
AflIII ACRYGT 1 cut(s) 341
AgsI TTSAA 9 cut(s) 88, 103, 128, 180, 434, 577, 733, 787, 948
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 1 cut(s) 519
AluBI AGCT 6 cut(s) 869, 925, 1099, 1103, 1124, 1128
AluI AGCT 6 cut(s) 869, 925, 1099, 1103, 1124, 1128
Alw21I GWGCWC 1 cut(s) 944
Alw26I GTCTC 2 cut(s) 404, 1111
Alw44I GTGCAC 1 cut(s) 940
AlwI GGATC 2 cut(s) 365, 603
Ama87I CYCGRG 1 cut(s) 622
AoxI GGCC 1 cut(s) 396
ApaLI GTGCAC 1 cut(s) 940
ApeKI GCWGC 1 cut(s) 144
ApoI RAATTY 2 cut(s) 708, 1076
AseI ATTAAT 1 cut(s) 771
AsuHPI GGTGA 1 cut(s) 1021
AsuNHI GCTAGC 2 cut(s) 1099, 1124
AvaI CYCGRG 1 cut(s) 622
BaeGI GKGCMC 2 cut(s) 195, 944
BbsI GAAGAC 2 cut(s) 528, 550
Bbv12I GWGCWC 1 cut(s) 944
BbvI GCAGC 1 cut(s) 156
BceAI ACGGC 2 cut(s) 80, 383
BciT130I CCWGG 1 cut(s) 521
BcoDI GTCTC 2 cut(s) 404, 1111
BfaI CTAG 8 cut(s) 423, 483, 899, 956, 1049, 1100, 1125, 1129
BglI GCCNNNNNGGC 1 cut(s) 64
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
Bme1390I CCNGG 1 cut(s) 521
BmeT110I CYCGRG 1 cut(s) 622
BmgBI CACGTC 1 cut(s) 615
BmrFI CCNGG 1 cut(s) 521
BmsI GCATC 1 cut(s) 300
BmtI GCTAGC 2 cut(s) 1103, 1128
BpiI GAAGAC 2 cut(s) 528, 550
BpmI CTGGAG 2 cut(s) 510, 1113
BpuEI CTTGAG 1 cut(s) 183
BsaJI CCNNGG 2 cut(s) 520, 1032
Bsc4I CCNNNNNNNGG 1 cut(s) 690
Bse1I ACTGG 3 cut(s) 423, 493, 835
BseBI CCWGG 1 cut(s) 521
BseDI CCNNGG 2 cut(s) 520, 1032
BseGI GGATG 1 cut(s) 31
BseLI CCNNNNNNNGG 1 cut(s) 690
BseNI ACTGG 3 cut(s) 423, 493, 835
BseSI GKGCMC 2 cut(s) 195, 944
BseXI GCAGC 1 cut(s) 156
BshFI GGCC 1 cut(s) 398
BsiHKAI GWGCWC 1 cut(s) 944
BsiHKCI CYCGRG 1 cut(s) 622
BslFI GGGAC 2 cut(s) 209, 1068
BslI CCNNNNNNNGG 1 cut(s) 690
BsmAI GTCTC 2 cut(s) 404, 1111
BsmFI GGGAC 2 cut(s) 209, 1068
BsmI GAATGC 1 cut(s) 1050
BsnI GGCC 1 cut(s) 398
BsoBI CYCGRG 1 cut(s) 622
Bsp1286I GDGCHC 2 cut(s) 195, 944
Bsp143I GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
Bsp19I CCATGG 1 cut(s) 1032
BspACI CCGC 1 cut(s) 255
BspANI GGCC 1 cut(s) 398
BspHI TCATGA 1 cut(s) 514
BspOI GCTAGC 2 cut(s) 1103, 1128
BspPI GGATC 2 cut(s) 365, 603
BspQI GCTCTTC 1 cut(s) 786
BsrI ACTGG 3 cut(s) 423, 493, 835
BssECI CCNNGG 2 cut(s) 520, 1032
BssMI GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
BssT1I CCWWGG 1 cut(s) 1032
Bst2UI CCWGG 1 cut(s) 521
Bst4CI ACNGT 2 cut(s) 265, 601
Bst6I CTCTTC 3 cut(s) 285, 556, 786
BstC8I GCNNGC 2 cut(s) 1101, 1126
BstDSI CCRYGG 1 cut(s) 1032
BstF5I GGATG 1 cut(s) 31
BstKTI GATC 7 cut(s) 214, 237, 352, 360, 611, 659, 716
BstMAI GTCTC 2 cut(s) 404, 1111
BstMBI GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNI CCWGG 1 cut(s) 521
BstNSI RCATGY 2 cut(s) 345, 803
BstSCI CCNGG 1 cut(s) 519
BstSLI GKGCMC 2 cut(s) 195, 944
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 2 cut(s) 528, 550
BsuRI GGCC 1 cut(s) 398
BtgI CCRYGG 1 cut(s) 1032
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 1 cut(s) 31
BtsIMutI CAGTG 4 cut(s) 416, 486, 606, 828
Cac8I GCNNGC 2 cut(s) 1101, 1126
CciI TCATGA 1 cut(s) 514
CseI GACGC 2 cut(s) 381, 522
Csp6I GTAC 1 cut(s) 965
CspCI CAANNNNNGTGG 2 cut(s) 990, 1025
CviAII CATG 6 cut(s) 68, 80, 342, 515, 800, 1033
CviQI GTAC 1 cut(s) 965
DpnI GATC 7 cut(s) 213, 236, 351, 359, 610, 658, 715
DpnII GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
DraI TTTAAA 1 cut(s) 393
Eam1104I CTCTTC 3 cut(s) 285, 556, 786
EarI CTCTTC 3 cut(s) 285, 556, 786
Eco130I CCWWGG 1 cut(s) 1032
Eco32I GATATC 1 cut(s) 986
Eco57I CTGAAG 2 cut(s) 171, 234
Eco88I CYCGRG 1 cut(s) 622
EcoRII CCWGG 1 cut(s) 519
EcoRV GATATC 1 cut(s) 986
EcoT14I CCWWGG 1 cut(s) 1032
ErhI CCWWGG 1 cut(s) 1032
FaeI CATG 6 cut(s) 71, 83, 345, 518, 803, 1036
FaiI YATR 9 cut(s) 69, 81, 343, 516, 801, 918, 935, 990, 1034
FalI AAGNNNNNCTT 2 cut(s) 386, 418
FaqI GGGAC 2 cut(s) 209, 1068
FatI CATG 6 cut(s) 67, 79, 341, 514, 799, 1032
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 1 cut(s) 38
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 8 cut(s) 423, 483, 899, 956, 1049, 1100, 1125, 1129
GluI GCNGC 1 cut(s) 145
GsuI CTGGAG 2 cut(s) 510, 1113
HaeIII GGCC 1 cut(s) 398
HgaI GACGC 2 cut(s) 381, 522
Hin1II CATG 6 cut(s) 71, 83, 345, 518, 803, 1036
HindIII AAGCTT 1 cut(s) 923
HphI GGTGA 1 cut(s) 1021
Hpy166II GTNNAC 2 cut(s) 942, 965
Hpy188I TCNGA 8 cut(s) 13, 211, 306, 637, 656, 703, 983, 1085
Hpy8I GTNNAC 2 cut(s) 942, 965
Hpy99I CGWCG 2 cut(s) 310, 375
HpyAV CCTTC 2 cut(s) 280, 324
HpyCH4III ACNGT 2 cut(s) 265, 601
HpyCH4IV ACGT 2 cut(s) 276, 614
HpyCH4V TGCA 4 cut(s) 39, 155, 803, 942
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpySE526I ACGT 2 cut(s) 276, 614
Hsp92II CATG 6 cut(s) 71, 83, 345, 518, 803, 1036
Kzo9I GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
LguI GCTCTTC 1 cut(s) 786
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 1 cut(s) 300
MaeI CTAG 8 cut(s) 423, 483, 899, 956, 1049, 1100, 1125, 1129
MaeII ACGT 2 cut(s) 276, 614
MaeIII GTNAC 4 cut(s) 603, 615, 820, 1027
MalI GATC 7 cut(s) 213, 236, 351, 359, 610, 658, 715
MboI GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
MhlI GDGCHC 2 cut(s) 195, 944
MluCI AATT 7 cut(s) 93, 180, 685, 708, 739, 772, 1076
MlyI GAGTC 2 cut(s) 904, 1102
MmeI TCCRAC 5 cut(s) 188, 329, 726, 741, 747
MnlI CCTC 7 cut(s) 286, 496, 618, 684, 845, 978, 1034
MseI TTAA 6 cut(s) 327, 392, 476, 542, 771, 810
MslI CAYNNNNRTG 3 cut(s) 219, 810, 947
MspR9I CCNGG 1 cut(s) 521
Mva1269I GAATGC 1 cut(s) 1050
MvaI CCWGG 1 cut(s) 521
MwoI GCNNNNNNNGC 1 cut(s) 64
NcoI CCATGG 1 cut(s) 1032
NdeII GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
NheI GCTAGC 2 cut(s) 1099, 1124
NlaIII CATG 6 cut(s) 71, 83, 345, 518, 803, 1036
NmuCI GTSAC 4 cut(s) 603, 615, 820, 1027
NspI RCATGY 2 cut(s) 345, 803
PaeR7I CTCGAG 1 cut(s) 622
PagI TCATGA 1 cut(s) 514
PciI ACATGT 1 cut(s) 341
PciSI GCTCTTC 1 cut(s) 786
PcsI WCGNNNNNNNCGW 1 cut(s) 620
PctI GAATGC 1 cut(s) 1050
PfeI GAWTC 8 cut(s) 72, 124, 430, 461, 494, 642, 764, 1088
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 2 cut(s) 903, 1102
PpsI GAGTC 2 cut(s) 903, 1102
PscI ACATGT 1 cut(s) 341
PshBI ATTAAT 1 cut(s) 771
Psp6I CCWGG 1 cut(s) 519
PspGI CCWGG 1 cut(s) 519
PspXI VCTCGAGB 1 cut(s) 622
RsaI GTAC 1 cut(s) 966
RsaNI GTAC 1 cut(s) 965
RseI CAYNNNNRTG 3 cut(s) 219, 810, 947
SapI GCTCTTC 1 cut(s) 786
SaqAI TTAA 6 cut(s) 327, 392, 476, 542, 771, 810
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 7 cut(s) 211, 234, 349, 357, 608, 656, 713
SchI GAGTC 2 cut(s) 904, 1102
ScrFI CCNGG 1 cut(s) 521
SduI GDGCHC 2 cut(s) 195, 944
SfaNI GCATC 1 cut(s) 300
Sfr274I CTCGAG 1 cut(s) 622
SlaI CTCGAG 1 cut(s) 622
SmiMI CAYNNNNRTG 3 cut(s) 219, 810, 947
SmlI CTYRAG 2 cut(s) 198, 622
SmoI CTYRAG 2 cut(s) 198, 622
Sse9I AATT 7 cut(s) 93, 180, 685, 708, 739, 772, 1076
SsiI CCGC 1 cut(s) 255
SspI AATATT 1 cut(s) 160
SspMI CTAG 8 cut(s) 423, 483, 899, 956, 1049, 1100, 1125, 1129
StyD4I CCNGG 1 cut(s) 519
StyI CCWWGG 1 cut(s) 1032
TaaI ACNGT 2 cut(s) 265, 601
TaiI ACGT 2 cut(s) 279, 617
TaqI TCGA 9 cut(s) 408, 623, 712, 743, 776, 1062, 1068, 1074, 1115
TasI AATT 7 cut(s) 93, 180, 685, 708, 739, 772, 1076
TfiI GAWTC 8 cut(s) 72, 124, 430, 461, 494, 642, 764, 1088
Tru1I TTAA 6 cut(s) 327, 392, 476, 542, 771, 810
Tru9I TTAA 6 cut(s) 327, 392, 476, 542, 771, 810
TscAI CASTG 4 cut(s) 423, 493, 606, 835
TseFI GTSAC 4 cut(s) 603, 615, 820, 1027
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 4 cut(s) 603, 615, 820, 1027
TspDTI ATGAA 6 cut(s) 68, 306, 348, 528, 555, 582
TspRI CASTG 4 cut(s) 423, 493, 606, 835
VneI GTGCAC 1 cut(s) 940
VspI ATTAAT 1 cut(s) 771
XapI RAATTY 2 cut(s) 708, 1076
XceI RCATGY 2 cut(s) 345, 803
XhoI CTCGAG 1 cut(s) 622
XspI CTAG 8 cut(s) 423, 483, 899, 956, 1049, 1100, 1125, 1129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.