Rorug05G0154400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0016789
Physical Location & Seq
Reverse (-)
14347449 .. 14351484
4036 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0154400.1

Sequence Viewer

Length: 1503 bp
ATGAGAATGAGACCTATATCAGCATTGTGTGGTCTCCTGCTCCTAATGCTATTGGTAGAAGAAGCTACATCTAGTTCCAGAAGACATGAAATGCTATCATCATTTCAGGCAAAGCTTCATGAAAAATCACTGTCCGGTCCAACCAAACCGCCTCTCTCATCATTGTTCGAAGCTTCAAATGTCACTAGGGATGGGAGAGTGTTTTACCCGATCGGGTACGGGGCAGACCCGACCGGGGCAAATGACAGCACAGAAGCCATAGCAAAAGCTTTGGAGGAAGCTTTTCAGTTGGAAAGCGGGCTTGAAATGCTGCCTGGAATCACTGACTTGGGAGGCATTGTCATTGATCTGCAAGGTGGAAATTACAAGATTGCCCAGCCTTTACGGTTCCCTCCAAACAGAGGCAACATTGTGATACAAGGAGGAACGCTGCGAGCCTCTGAAACATTTCCCGGTGACCGCCACCTAGTCGAATTATGGTCTCCAAATTCTCAAAAGCTTGGGGAAAAAACCTCCATCACCAATCGATTCTTCTTTGATAAAAAAGTCGAAGGCGGTGTAGGAATCTACTACGAAGACATCACCTTTAGAGATATACTATTCGATTCAAGCTTCAGGGGAGGAGGCATTTTCATAGTCGATTCAGCTCGAGTTCGCATAACCAATTGCTTCTTCCTACACTTCACAACACAAGGGATTCTAGTCGAAAAGGGCCACGAAACCTACATATCAAACACCTTCTTGGGACAACACTCCACAGTTGGTGGTGACAAAGGTGAGAGGGGATTTACCGGCACAGGCATCGATCTTGCTAGCAATGACAATGCCGTAACTGATGTCGTAATATTTTCAGCTGAAATTGGGATTGTGTTAAGGGGTCAGGCTAACATGGTCACAGGGGTACATTGTTATAACAAGGCAAGTGGCTTTGGGGGTATAGGTATTTTGGTAAAGTTAGCAGGAAACTCACAAACTAGGATTGACAATTGCTACTTGGATTTCAATGCTATTGTCATGGAAGACCCAGTTCAAGTTCATGTGACCAATGGGTTCTTTTTGGGTGATGCTAATGTGGTGTTGAAATCTGTCAATGGCAAGATTCTAGGGTTAAATATTGTGAACAATATGTTCACTGGGAACCCTAGAAGTACTGTTCCCATGGTTCAATTAGATGGGCAATTTGGGGACATTGATCAAGTGGTGATTGACCAGAACAATGTGATTGGGATGAGCTTGAAATCAACGGTAGGGAGACTAAGTCTGGAGGGGAATGGGACCAAATGGGTAGCTGATTTTTCTTCCCAGTTGGTCTTTCCCAACCGGATTAATCATTTTCAGTATTCTTTACATACAAAAGGGGAAACCAAGTTTACTACACATGCTGTGACAAATGTATCGAACAATGTGGTGGTTGTGGAGAGTCAAAATGAGGTAGATGGTGTGGTTTCTCTAGTTGTTCACAAAGTAGATCATTATGTTTCAGAAGAAGATTTTTTAATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

500

Amino Acids

54.46

Weight (kDa)

5.57

Isoelectric Point (pI)

23.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016789)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g21200
malus_domestica MD03G1217100.v1.1 MD11G1234800.v1.1
prunus_persica Prupe.4G192300_v2.0.a1
rosa_chinensis RchiOBHm_Chr5g0036261
rosa_laevigata RLG00000033682
rosa_multiflora Rmu_sc0000247.1_g000012
rosa_roxburghii Rroxscaffold_1G00044530
rosa_rugosa Rorug05G0154400
rosa_samantha Rh5AG248100 Rh5BG248700 Rh5CG280000 Rh5DG257000
rosa_wichuraiana Rw5G022750

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 912
AciI CCGC 4 cut(s) 149, 297, 460, 555
AcsI RAATTY 1 cut(s) 487
AcuI CTGAAG 1 cut(s) 598
AfaI GTAC 3 cut(s) 218, 903, 1150
AfiI CCNNNNNNNGG 2 cut(s) 235, 401
AgsI TTSAA 8 cut(s) 177, 305, 609, 1003, 1031, 1081, 1166, 1237
AjnI CCWGG 1 cut(s) 313
AjuI GAANNNNNNNTTGG 4 cut(s) 515, 547, 656, 688
Alw26I GTCTC 4 cut(s) 4, 38, 486, 1246
Ama87I CYCGRG 1 cut(s) 648
AoxI GGCC 1 cut(s) 712
ApeKI GCWGC 2 cut(s) 310, 430
ApoI RAATTY 1 cut(s) 487
AseI ATTAAT 1 cut(s) 1326
Asp700I GAANNNNTTC 2 cut(s) 282, 447
AspS9I GGNCC 3 cut(s) 137, 712, 1275
AsuC2I CCSGG 2 cut(s) 235, 453
AsuHPI GGTGA 7 cut(s) 467, 511, 574, 779, 788, 1073, 1213
AsuII TTCGAA 1 cut(s) 168
AsuNHI GCTAGC 1 cut(s) 812
AvaI CYCGRG 1 cut(s) 648
AvaII GGWCC 2 cut(s) 137, 1275
BaeI ACNNNNGTAYC 2 cut(s) 1377, 1410
BbsI GAAGAC 3 cut(s) 88, 582, 1026
BbvI GCAGC 2 cut(s) 297, 417
BccI CCATC 4 cut(s) 185, 524, 1166, 1430
BceAI ACGGC 1 cut(s) 812
BcgI CGANNNNNNTGC 2 cut(s) 784, 818
BciT130I CCWGG 1 cut(s) 315
BclI TGATCA 1 cut(s) 1192
BcnI CCSGG 2 cut(s) 235, 453
BcoDI GTCTC 4 cut(s) 4, 38, 486, 1246
BfaI CTAG 9 cut(s) 72, 186, 467, 701, 813, 975, 1103, 1143, 1451
BisI GCNGC 2 cut(s) 311, 431
BlsI GCNGC 2 cut(s) 312, 432
BmcAI AGTACT 1 cut(s) 1150
Bme1390I CCNGG 3 cut(s) 235, 315, 453
Bme18I GGWCC 2 cut(s) 137, 1275
BmeT110I CYCGRG 1 cut(s) 648
BmgT120I GGNCC 3 cut(s) 137, 712, 1275
BmiI GGNNCC 3 cut(s) 389, 1139, 1276
BmrFI CCNGG 3 cut(s) 235, 315, 453
BmrI ACTGGG 3 cut(s) 1019, 1143, 1297
BmsI GCATC 2 cut(s) 810, 1054
BmtI GCTAGC 1 cut(s) 816
BmuI ACTGGG 3 cut(s) 1019, 1143, 1297
BpiI GAAGAC 3 cut(s) 88, 582, 1026
BpmI CTGGAG 1 cut(s) 1283
Bpu14I TTCGAA 1 cut(s) 168
BpuMI CCSGG 2 cut(s) 235, 453
Bsa29I ATCGAT 2 cut(s) 526, 804
BsaI GGTCTC 3 cut(s) 4, 38, 486
BsaJI CCNNGG 2 cut(s) 234, 1158
BsaWI WCCGGW 2 cut(s) 134, 1320
BsaXI ACNNNNNCTCC 4 cut(s) 324, 354, 1243, 1273
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 401
Bse118I RCCGGY 1 cut(s) 791
Bse1I ACTGG 3 cut(s) 1025, 1138, 1303
Bse3DI GCAATG 1 cut(s) 823
BseBI CCWGG 1 cut(s) 315
BseCI ATCGAT 2 cut(s) 526, 804
BseDI CCNNGG 2 cut(s) 234, 1158
BseGI GGATG 2 cut(s) 196, 1233
BseLI CCNNNNNNNGG 2 cut(s) 235, 401
BseMI GCAATG 1 cut(s) 823
BseNI ACTGG 3 cut(s) 1025, 1138, 1303
BseRI GAGGAG 1 cut(s) 636
BseXI GCAGC 2 cut(s) 297, 417
BseYI CCCAGC 1 cut(s) 375
Bsh1285I CGRYCG 2 cut(s) 213, 234
BshFI GGCC 1 cut(s) 714
BshVI ATCGAT 2 cut(s) 526, 804
BsiEI CGRYCG 2 cut(s) 213, 234
BsiHKCI CYCGRG 1 cut(s) 648
BsiSI CCGG 5 cut(s) 135, 234, 453, 792, 1321
BslFI GGGAC 3 cut(s) 759, 1199, 1288
BslI CCNNNNNNNGG 2 cut(s) 235, 401
BsmAI GTCTC 4 cut(s) 4, 38, 486, 1246
BsmFI GGGAC 3 cut(s) 759, 1199, 1288
BsnI GGCC 1 cut(s) 714
Bso31I GGTCTC 3 cut(s) 4, 38, 486
BsoBI CYCGRG 1 cut(s) 648
Bsp119I TTCGAA 1 cut(s) 168
Bsp143I GATC 5 cut(s) 210, 346, 805, 1192, 1468
Bsp19I CCATGG 1 cut(s) 1158
BspACI CCGC 4 cut(s) 149, 297, 460, 555
BspANI GGCC 1 cut(s) 714
BspDI ATCGAT 2 cut(s) 526, 804
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 3 cut(s) 389, 1139, 1276
BspOI GCTAGC 1 cut(s) 816
BspT104I TTCGAA 1 cut(s) 168
BspTNI GGTCTC 3 cut(s) 4, 38, 486
BsrDI GCAATG 1 cut(s) 823
BsrFI RCCGGY 1 cut(s) 791
BsrI ACTGG 3 cut(s) 1025, 1138, 1303
BssAI RCCGGY 1 cut(s) 791
BssECI CCNNGG 2 cut(s) 234, 1158
BssMI GATC 5 cut(s) 210, 346, 805, 1192, 1468
BssT1I CCWWGG 1 cut(s) 1158
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 5 cut(s) 132, 387, 760, 1153, 1246
BstBI TTCGAA 1 cut(s) 168
BstC8I GCNNGC 3 cut(s) 299, 435, 814
BstDEI CTNAG 1 cut(s) 1256
BstDSI CCRYGG 1 cut(s) 1158
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 2 cut(s) 196, 1233
BstKTI GATC 5 cut(s) 213, 349, 808, 1195, 1471
BstMAI GTCTC 4 cut(s) 4, 38, 486, 1246
BstMBI GATC 5 cut(s) 210, 346, 805, 1192, 1468
BstMCI CGRYCG 2 cut(s) 213, 234
BstMWI GCNNNNNNNGC 2 cut(s) 46, 307
BstNI CCWGG 1 cut(s) 315
BstNSI RCATGY 1 cut(s) 1382
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 3 cut(s) 233, 313, 451
BstV1I GCAGC 2 cut(s) 297, 417
BstV2I GAAGAC 3 cut(s) 88, 582, 1026
Bsu15I ATCGAT 2 cut(s) 526, 804
BsuRI GGCC 1 cut(s) 714
BsuTUI ATCGAT 2 cut(s) 526, 804
BtgI CCRYGG 1 cut(s) 1158
BtsCI GGATG 2 cut(s) 196, 1233
BtsIMutI CAGTG 3 cut(s) 128, 321, 1131
Cac8I GCNNGC 3 cut(s) 299, 435, 814
CciI TCATGA 1 cut(s) 118
Cfr10I RCCGGY 1 cut(s) 791
Cfr13I GGNCC 3 cut(s) 137, 712, 1275
ClaI ATCGAT 2 cut(s) 526, 804
Csp6I GTAC 3 cut(s) 217, 902, 1149
CspCI CAANNNNNGTGG 2 cut(s) 904, 939
CviAII CATG 7 cut(s) 86, 119, 889, 1015, 1037, 1159, 1379
CviQI GTAC 3 cut(s) 217, 902, 1149
DdeI CTNAG 1 cut(s) 1256
DpnI GATC 5 cut(s) 212, 348, 807, 1194, 1470
DpnII GATC 5 cut(s) 210, 346, 805, 1192, 1468
Eco130I CCWWGG 1 cut(s) 1158
Eco31I GGTCTC 3 cut(s) 4, 38, 486
Eco47I GGWCC 2 cut(s) 137, 1275
Eco57I CTGAAG 1 cut(s) 598
Eco88I CYCGRG 1 cut(s) 648
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 313
EcoT14I CCWWGG 1 cut(s) 1158
ErhI CCWWGG 1 cut(s) 1158
FaeI CATG 7 cut(s) 89, 122, 892, 1018, 1040, 1162, 1382
FaqI GGGAC 3 cut(s) 759, 1199, 1288
FatI CATG 7 cut(s) 85, 118, 888, 1014, 1036, 1158, 1378
FauI CCCGC 1 cut(s) 290
FbaI TGATCA 1 cut(s) 1192
Fnu4HI GCNGC 2 cut(s) 311, 431
FokI GGATG 2 cut(s) 203, 1240
Fsp4HI GCNGC 2 cut(s) 311, 431
FspBI CTAG 9 cut(s) 72, 186, 467, 701, 813, 975, 1103, 1143, 1451
GluI GCNGC 2 cut(s) 311, 431
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 1283
HaeIII GGCC 1 cut(s) 714
HapII CCGG 5 cut(s) 135, 234, 453, 792, 1321
Hin1II CATG 7 cut(s) 89, 122, 892, 1018, 1040, 1162, 1382
HindIII AAGCTT 6 cut(s) 113, 171, 267, 279, 497, 610
HinfI GANTC 8 cut(s) 318, 528, 564, 605, 641, 697, 1099, 1420
HpaII CCGG 5 cut(s) 135, 234, 453, 792, 1321
HphI GGTGA 7 cut(s) 467, 511, 574, 779, 788, 1073, 1213
Hpy166II GTNNAC 4 cut(s) 1120, 1131, 1371, 1459
Hpy188I TCNGA 2 cut(s) 442, 1483
Hpy188III TCNNGA 3 cut(s) 78, 119, 1262
Hpy8I GTNNAC 4 cut(s) 1120, 1131, 1371, 1459
HpyAV CCTTC 2 cut(s) 545, 748
HpyCH4III ACNGT 5 cut(s) 132, 387, 760, 1153, 1246
HpyCH4V TGCA 1 cut(s) 352
HpyF10VI GCNNNNNNNGC 2 cut(s) 46, 307
HpyF3I CTNAG 1 cut(s) 1256
Hsp92II CATG 7 cut(s) 89, 122, 892, 1018, 1040, 1162, 1382
Ksp22I TGATCA 1 cut(s) 1192
Kzo9I GATC 5 cut(s) 210, 346, 805, 1192, 1468
LmnI GCTCC 1 cut(s) 45
Lsp1109I GCAGC 2 cut(s) 297, 417
LweI GCATC 2 cut(s) 810, 1054
MaeI CTAG 9 cut(s) 72, 186, 467, 701, 813, 975, 1103, 1143, 1451
MaeIII GTNAC 7 cut(s) 181, 455, 767, 829, 892, 1039, 1384
MalI GATC 5 cut(s) 212, 348, 807, 1194, 1470
MboI GATC 5 cut(s) 210, 346, 805, 1192, 1468
MboII GAAGA 9 cut(s) 71, 93, 523, 587, 664, 1031, 1290, 1496, 1499
MfeI CAATTG 2 cut(s) 664, 985
MluCI AATT 8 cut(s) 361, 473, 487, 664, 858, 985, 1166, 1178
MlyI GAGTC 1 cut(s) 1429
MmeI TCCRAC 2 cut(s) 164, 270
MroXI GAANNNNTTC 2 cut(s) 282, 447
MseI TTAA 4 cut(s) 872, 1109, 1326, 1496
MspA1I CMGCKG 1 cut(s) 854
MspI CCGG 5 cut(s) 135, 234, 453, 792, 1321
MspR9I CCNGG 3 cut(s) 235, 315, 453
MunI CAATTG 2 cut(s) 664, 985
MvaI CCWGG 1 cut(s) 315
MwoI GCNNNNNNNGC 2 cut(s) 46, 307
NciI CCSGG 2 cut(s) 235, 453
NcoI CCATGG 1 cut(s) 1158
NdeII GATC 5 cut(s) 210, 346, 805, 1192, 1468
NheI GCTAGC 1 cut(s) 812
NlaIII CATG 7 cut(s) 89, 122, 892, 1018, 1040, 1162, 1382
NlaIV GGNNCC 3 cut(s) 389, 1139, 1276
NmuCI GTSAC 6 cut(s) 181, 455, 767, 892, 1039, 1384
NspI RCATGY 1 cut(s) 1382
NspV TTCGAA 1 cut(s) 168
PaeR7I CTCGAG 1 cut(s) 648
PagI TCATGA 1 cut(s) 118
PdmI GAANNNNTTC 2 cut(s) 282, 447
PfeI GAWTC 7 cut(s) 318, 528, 564, 605, 641, 697, 1099
PflFI GACNNNGTC 1 cut(s) 1257
PkrI GCNGC 2 cut(s) 312, 432
Ple19I CGATCG 1 cut(s) 213
PleI GAGTC 1 cut(s) 1428
PpsI GAGTC 1 cut(s) 1428
PshBI ATTAAT 1 cut(s) 1326
PsiI TTATAA 1 cut(s) 912
Psp6I CCWGG 1 cut(s) 313
PspEI GGTNACC 1 cut(s) 455
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 389, 1139, 1276
PspPI GGNCC 3 cut(s) 137, 712, 1275
PspXI VCTCGAGB 1 cut(s) 648
PsyI GACNNNGTC 1 cut(s) 1257
PvuI CGATCG 1 cut(s) 213
PvuII CAGCTG 1 cut(s) 854
RsaI GTAC 3 cut(s) 218, 903, 1150
RsaNI GTAC 3 cut(s) 217, 902, 1149
SaqAI TTAA 4 cut(s) 872, 1109, 1326, 1496
SatI GCNGC 2 cut(s) 311, 431
Sau3AI GATC 5 cut(s) 210, 346, 805, 1192, 1468
Sau96I GGNCC 3 cut(s) 137, 712, 1275
ScaI AGTACT 1 cut(s) 1150
SchI GAGTC 1 cut(s) 1429
ScrFI CCNGG 3 cut(s) 235, 315, 453
SfaNI GCATC 2 cut(s) 810, 1054
Sfr274I CTCGAG 1 cut(s) 648
SfuI TTCGAA 1 cut(s) 168
SinI GGWCC 2 cut(s) 137, 1275
SlaI CTCGAG 1 cut(s) 648
SmlI CTYRAG 1 cut(s) 648
SmoI CTYRAG 1 cut(s) 648
Sse9I AATT 8 cut(s) 361, 473, 487, 664, 858, 985, 1166, 1178
SsiI CCGC 4 cut(s) 149, 297, 460, 555
SspI AATATT 2 cut(s) 846, 1114
SspMI CTAG 9 cut(s) 72, 186, 467, 701, 813, 975, 1103, 1143, 1451
StyD4I CCNGG 3 cut(s) 233, 313, 451
StyI CCWWGG 1 cut(s) 1158
TaaI ACNGT 5 cut(s) 132, 387, 760, 1153, 1246
TasI AATT 8 cut(s) 361, 473, 487, 664, 858, 985, 1166, 1178
TatI WGTACW 1 cut(s) 1148
TfiI GAWTC 7 cut(s) 318, 528, 564, 605, 641, 697, 1099
Tru1I TTAA 4 cut(s) 872, 1109, 1326, 1496
Tru9I TTAA 4 cut(s) 872, 1109, 1326, 1496
TscAI CASTG 3 cut(s) 135, 328, 1138
TseFI GTSAC 6 cut(s) 181, 455, 767, 892, 1039, 1384
TseI GCWGC 2 cut(s) 310, 430
Tsp45I GTSAC 6 cut(s) 181, 455, 767, 892, 1039, 1384
TspDTI ATGAA 5 cut(s) 102, 107, 135, 622, 1025
TspRI CASTG 3 cut(s) 135, 328, 1138
Tth111I GACNNNGTC 1 cut(s) 1257
VpaK11BI GGWCC 2 cut(s) 137, 1275
VspI ATTAAT 1 cut(s) 1326
XapI RAATTY 1 cut(s) 487
XceI RCATGY 1 cut(s) 1382
XhoI CTCGAG 1 cut(s) 648
XmnI GAANNNNTTC 2 cut(s) 282, 447
XspI CTAG 9 cut(s) 72, 186, 467, 701, 813, 975, 1103, 1143, 1451
ZrmI AGTACT 1 cut(s) 1150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.