Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0016792

Physical Location & Seq

Genomic Coordinates Reverse (-)

15735610 .. 15737295

Gene Structure 1686 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g22731.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGGAACCGCCACACCTCAATTATGAGAGGCTGTTTCGTTCTCACATCCAAGAAGCTAGCAATATGGCCGGTAGAACCAATCAAGCACCCTACTCTTCTTCATCACCTTCTTCTTCAGTCCCCATTTCATACAAACACGACGTGTTTCTCAATTTCAGAGGTGAAGATACACGCTCTAACTTTACCGGCCATCTTTACACAGCTTTGCGCAACAAAGGAATCAAGACCTTCATAGATGACGGGCTCAAAAGAGGAGAAGAAATATCTCGAGCACTTTCAAAAGCAATCAATGAGTCAAGGATGTCTGTCATCGTGTTCTCTGAAAGCTATGCAGAATCACCATGGTGTTTGGACGAACTTGTTGAGATCCTTGGATGTAGAGAATCAAAACGACAGATGGTTAGGCCAGTGTTTTACAAAGTGAAGCCCTCTGATGTACGACACCTTAAAGGTACTTTTGGTAAGGCACTTGCTCAACATGAACTCTATTTTGAGCATGATATTATGATTGTGCGCAGATGGGGTGCAGCTCTTTCTGAAGCTGCCAATTTGTCCGGCTGGCCTTTCAAGGATCAGAATGAATCTCGGTTCATCAAACGCATCGTTAAAGAGATCGCAGATCAACTATCAAACTCCAAGTTATCCCTGGATGAAATCAGGGATCCACTTGTGGTAACAGCTACAGAGGTTATTCCAAGACCACCACCTAATATCGTGCTGAAAGAAACTTGGTCCCGTCCAGCTGAGGGTTATCTGAAGATAAATTATGATGGTGCCTATACTGTGAGGAAGGGAGGTTTAGGTGTGGTTGCTCGGGATACAAAGGGACGTTTTGTGGCAGCAAAGTGCAGGTTGGTTAATGTCGAATCGGAGGACGACGTGGTGGCAATGGCAGCACTGGAGGCTCTGTGTCTAGCAAAGGAACTTGGTTGGCCGCGAGTTTGTTTCGAGGGTGACTCTGTACGTGTTGTTAATGCTCTGCAAACTTCTACAGCTTCTGATGATTCTGACACTTCCTCATTCTCCTCCTCCTCTTCTTCTTCCTCCTCCTCGTTCGGTCAGATCATTAGTGAGATTCAATATATGTCACGCAGCTTTCAGCAGTCTACATTTTCTGTTATTCACCAGAAGGCTAATGCTATTGCTGAGAATCTTGCTACACATGGTTTATCAAATCCCGAAGACAAACATTGGCTTGCTAAGCCCCCGACTTTTCTCGAGTACTCTTTGCGTATAGAAAAGTCTACTTCTTCTTATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

421

Amino Acids

47.0

Weight (kDa)

7.65

Isoelectric Point (pI)

53.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	45 - 215	6.6e-53	TIR domain
TIR_2	PF13676	48 - 143	1.2e-14	TIR domain
RVT_3	PF13456	255 - 389	1.1e-11	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016792)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22731 FvH4_3g22731
rosa_laevigata	RLG00000033935
rosa_roxburghii	Rroxscaffold_1G00041550
rosa_samantha	Rh1AG445100 Rh3CG338200 Rh5AG267800 Rh5AG467200 Rh5DG279800 Rh6AG204700 Rh6BG207700 Rh6CG210100
rosa_wichuraiana	Rw5G025030 Rw6G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	209, 515
Acc36I	ACCTGC	1 cut(s)	840
AccB1I	GGYRCC	1 cut(s)	773
AccI	GTMKAC	2 cut(s)	1106, 1244
AccII	CGCG	1 cut(s)	937
AciI	CCGC	2 cut(s)	8, 935
AclWI	GGATC	4 cut(s)	361, 579, 656, 669
AcoI	YGGCCR	3 cut(s)	66, 187, 932
AcuI	CTGAAG	3 cut(s)	99, 558, 776
AdeI	CACNNNGTG	1 cut(s)	142
AfaI	GTAC	4 cut(s)	438, 454, 963, 1223
AfiI	CCNNNNNNNGG	1 cut(s)	746
AflIII	ACRYGT	2 cut(s)	141, 964
AgsI	TTSAA	3 cut(s)	279, 568, 1079
AjiI	CACGTC	2 cut(s)	142, 880
AjnI	CCWGG	1 cut(s)	645
AleI	CACNNNNGTG	1 cut(s)	343
AluBI	AGCT	9 cut(s)	56, 203, 327, 530, 542, 680, 743, 995, 1095
AluI	AGCT	9 cut(s)	56, 203, 327, 530, 542, 680, 743, 995, 1095
Alw21I	GWGCWC	1 cut(s)	274
AlwI	GGATC	4 cut(s)	361, 579, 656, 669
AlwNI	CAGNNNCTG	1 cut(s)	998
Ama87I	CYCGRG	3 cut(s)	267, 813, 1217
AoxI	GGCC	5 cut(s)	66, 187, 404, 560, 932
ApeKI	GCWGC	5 cut(s)	527, 542, 839, 893, 1092
AspLEI	GCGC	2 cut(s)	210, 516
AspS9I	GGNCC	1 cut(s)	732
AsuHPI	GGTGA	5 cut(s)	96, 173, 330, 965, 1115
AsuNHI	GCTAGC	1 cut(s)	56
AvaI	CYCGRG	3 cut(s)	267, 813, 1217
AvaII	GGWCC	1 cut(s)	732
BamHI	GGATCC	1 cut(s)	661
BanI	GGYRCC	1 cut(s)	773
BanII	GRGCYC	1 cut(s)	246
BbsI	GAAGAC	1 cut(s)	1188
Bbv12I	GWGCWC	1 cut(s)	274
BbvCI	CCTCAGC	1 cut(s)	744
BbvI	GCAGC	5 cut(s)	529, 539, 851, 905, 1104
BccI	CCATC	4 cut(s)	198, 391, 513, 764
BciT130I	CCWGG	1 cut(s)	647
BciVI	GTATCC	1 cut(s)	811
BfaI	CTAG	2 cut(s)	57, 914
BfmI	CTRYAG	2 cut(s)	681, 990
BfuAI	ACCTGC	1 cut(s)	840
BfuI	GTATCC	1 cut(s)	811
BisI	GCNGC	6 cut(s)	528, 543, 840, 894, 935, 1093
BlpI	GCTNAGC	1 cut(s)	1200
BlsI	GCNGC	6 cut(s)	529, 544, 841, 895, 936, 1094
BmcAI	AGTACT	1 cut(s)	1223
Bme1390I	CCNGG	1 cut(s)	647
Bme18I	GGWCC	1 cut(s)	732
BmeT110I	CYCGRG	3 cut(s)	267, 813, 1217
BmgBI	CACGTC	2 cut(s)	142, 880
BmgT120I	GGNCC	1 cut(s)	732
BmiI	GGNNCC	4 cut(s)	6, 663, 734, 775
BmrFI	CCNGG	1 cut(s)	647
BmsI	GCATC	1 cut(s)	609
BmtI	GCTAGC	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	1188
BplI	GAGNNNNNCTC	2 cut(s)	941, 973
BpmI	CTGGAG	1 cut(s)	920
Bpu10I	CCTNAGC	1 cut(s)	744
Bpu1102I	GCTNAGC	1 cut(s)	1200
BsaAI	YACGTR	1 cut(s)	965
BsaJI	CCNNGG	3 cut(s)	341, 370, 645
BsaXI	ACNNNNNCTCC	2 cut(s)	893, 923
Bsc4I	CCNNNNNNNGG	1 cut(s)	746
Bse118I	RCCGGY	2 cut(s)	68, 185
Bse1I	ACTGG	2 cut(s)	407, 903
Bse3DI	GCAATG	1 cut(s)	894
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	3 cut(s)	341, 370, 645
BseGI	GGATG	4 cut(s)	45, 306, 380, 655
BseLI	CCNNNNNNNGG	1 cut(s)	746
BseMI	GCAATG	1 cut(s)	894
BseMII	CTCAG	2 cut(s)	735, 1137
BseNI	ACTGG	2 cut(s)	407, 903
BseRI	GAGGAG	6 cut(s)	267, 1015, 1018, 1021, 1036, 1039
BseXI	GCAGC	5 cut(s)	529, 539, 851, 905, 1104
BsgI	GTGCAG	2 cut(s)	546, 868
Bsh1236I	CGCG	1 cut(s)	937
BshFI	GGCC	5 cut(s)	68, 189, 406, 562, 934
BshNI	GGYRCC	1 cut(s)	773
BsiHKAI	GWGCWC	1 cut(s)	274
BsiHKCI	CYCGRG	3 cut(s)	267, 813, 1217
BsiSI	CCGG	3 cut(s)	69, 186, 555
BslFI	GGGAC	3 cut(s)	104, 718, 840
BslI	CCNNNNNNNGG	1 cut(s)	746
BsmFI	GGGAC	3 cut(s)	104, 718, 840
BsnI	GGCC	5 cut(s)	68, 189, 406, 562, 934
BsoBI	CYCGRG	3 cut(s)	267, 813, 1217
Bsp1286I	GDGCHC	2 cut(s)	246, 274
Bsp143I	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
Bsp1720I	GCTNAGC	1 cut(s)	1200
Bsp19I	CCATGG	1 cut(s)	341
BspACI	CCGC	2 cut(s)	8, 935
BspANI	GGCC	5 cut(s)	68, 189, 406, 562, 934
BspCNI	CTCAG	2 cut(s)	736, 1138
BspFNI	CGCG	1 cut(s)	937
BspLI	GGNNCC	4 cut(s)	6, 663, 734, 775
BspMI	ACCTGC	1 cut(s)	840
BspOI	GCTAGC	1 cut(s)	60
BspPI	GGATC	4 cut(s)	361, 579, 656, 669
BspT107I	GGYRCC	1 cut(s)	773
BsrDI	GCAATG	1 cut(s)	894
BsrFI	RCCGGY	2 cut(s)	68, 185
BsrI	ACTGG	2 cut(s)	407, 903
BssAI	RCCGGY	2 cut(s)	68, 185
BssECI	CCNNGG	3 cut(s)	341, 370, 645
BssMI	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
BssT1I	CCWWGG	2 cut(s)	341, 370
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	1 cut(s)	784
Bst6I	CTCTTC	2 cut(s)	100, 1039
BstBAI	YACGTR	1 cut(s)	965
BstC8I	GCNNGC	3 cut(s)	58, 560, 1197
BstDEI	CTNAG	3 cut(s)	744, 1146, 1200
BstDSI	CCRYGG	1 cut(s)	341
BstF5I	GGATG	4 cut(s)	45, 306, 380, 655
BstFNI	CGCG	1 cut(s)	937
BstHHI	GCGC	2 cut(s)	210, 516
BstKTI	GATC	6 cut(s)	369, 574, 615, 622, 664, 1065
BstMBI	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
BstMWI	GCNNNNNNNGC	3 cut(s)	893, 902, 1201
BstNI	CCWGG	1 cut(s)	647
BstSCI	CCNGG	1 cut(s)	645
BstSFI	CTRYAG	2 cut(s)	681, 990
BstUI	CGCG	1 cut(s)	937
BstV1I	GCAGC	5 cut(s)	529, 539, 851, 905, 1104
BstV2I	GAAGAC	1 cut(s)	1188
BstX2I	RGATCY	2 cut(s)	366, 661
BstYI	RGATCY	2 cut(s)	366, 661
BsuI	GTATCC	1 cut(s)	811
BsuRI	GGCC	5 cut(s)	68, 189, 406, 562, 934
BtgI	CCRYGG	1 cut(s)	341
BtrI	CACGTC	2 cut(s)	142, 880
BtsCI	GGATG	4 cut(s)	45, 306, 380, 655
BtsIMutI	CAGTG	2 cut(s)	414, 896
BveI	ACCTGC	1 cut(s)	840
Cac8I	GCNNGC	3 cut(s)	58, 560, 1197
CaiI	CAGNNNCTG	1 cut(s)	998
CfoI	GCGC	2 cut(s)	210, 516
Cfr10I	RCCGGY	2 cut(s)	68, 185
Cfr13I	GGNCC	1 cut(s)	732
Csp6I	GTAC	4 cut(s)	437, 453, 962, 1222
CviAII	CATG	4 cut(s)	342, 479, 497, 1163
CviQI	GTAC	4 cut(s)	437, 453, 962, 1222
DdeI	CTNAG	3 cut(s)	744, 1146, 1200
DpnI	GATC	6 cut(s)	368, 573, 614, 621, 663, 1064
DpnII	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
DraIII	CACNNNGTG	1 cut(s)	142
EaeI	YGGCCR	3 cut(s)	66, 187, 932
Eam1104I	CTCTTC	2 cut(s)	100, 1039
EarI	CTCTTC	2 cut(s)	100, 1039
Eco130I	CCWWGG	2 cut(s)	341, 370
Eco24I	GRGCYC	1 cut(s)	246
Eco47I	GGWCC	1 cut(s)	732
Eco57I	CTGAAG	3 cut(s)	99, 558, 776
Eco88I	CYCGRG	3 cut(s)	267, 813, 1217
EcoRII	CCWGG	1 cut(s)	645
EcoT14I	CCWWGG	2 cut(s)	341, 370
EcoT38I	GRGCYC	1 cut(s)	246
ErhI	CCWWGG	2 cut(s)	341, 370
FaeI	CATG	4 cut(s)	345, 482, 500, 1166
FaqI	GGGAC	3 cut(s)	104, 718, 840
FatI	CATG	4 cut(s)	341, 478, 496, 1162
FblI	GTMKAC	2 cut(s)	1106, 1244
Fnu4HI	GCNGC	6 cut(s)	528, 543, 840, 894, 935, 1093
FokI	GGATG	4 cut(s)	32, 313, 387, 662
FriOI	GRGCYC	1 cut(s)	246
Fsp4HI	GCNGC	6 cut(s)	528, 543, 840, 894, 935, 1093
FspBI	CTAG	2 cut(s)	57, 914
FspI	TGCGCA	2 cut(s)	209, 515
GlaI	GCGC	2 cut(s)	209, 515
GluI	GCNGC	6 cut(s)	528, 543, 840, 894, 935, 1093
GsuI	CTGGAG	1 cut(s)	920
HaeIII	GGCC	5 cut(s)	68, 189, 406, 562, 934
HapII	CCGG	3 cut(s)	69, 186, 555
HhaI	GCGC	2 cut(s)	210, 516
Hin1II	CATG	4 cut(s)	345, 482, 500, 1166
Hin6I	GCGC	2 cut(s)	208, 514
HinP1I	GCGC	2 cut(s)	208, 514
HpaII	CCGG	3 cut(s)	69, 186, 555
HphI	GGTGA	5 cut(s)	96, 173, 330, 965, 1115
Hpy166II	GTNNAC	2 cut(s)	1107, 1245
Hpy188III	TCNNGA	5 cut(s)	223, 267, 815, 1178, 1217
Hpy8I	GTNNAC	2 cut(s)	1107, 1245
Hpy99I	CGWCG	2 cut(s)	143, 881
HpyAV	CCTTC	4 cut(s)	117, 238, 784, 1123
HpyCH4III	ACNGT	1 cut(s)	784
HpyCH4IV	ACGT	4 cut(s)	141, 829, 879, 964
HpyCH4V	TGCA	4 cut(s)	332, 527, 849, 982
HpyF10VI	GCNNNNNNNGC	3 cut(s)	893, 902, 1201
HpyF3I	CTNAG	3 cut(s)	744, 1146, 1200
HpySE526I	ACGT	4 cut(s)	141, 829, 879, 964
Hsp92II	CATG	4 cut(s)	345, 482, 500, 1166
HspAI	GCGC	2 cut(s)	208, 514
Kzo9I	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
Lsp1109I	GCAGC	5 cut(s)	529, 539, 851, 905, 1104
LweI	GCATC	1 cut(s)	609
MaeI	CTAG	2 cut(s)	57, 914
MaeII	ACGT	4 cut(s)	141, 829, 879, 964
MaeIII	GTNAC	3 cut(s)	673, 953, 1086
MalI	GATC	6 cut(s)	368, 573, 614, 621, 663, 1064
MboI	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
MflI	RGATCY	2 cut(s)	366, 661
MhlI	GDGCHC	2 cut(s)	246, 274
MluCI	AATT	4 cut(s)	19, 151, 547, 763
MlyI	GAGTC	2 cut(s)	302, 950
MseI	TTAA	4 cut(s)	447, 606, 858, 972
MslI	CAYNNNNRTG	1 cut(s)	343
MspA1I	CMGCKG	1 cut(s)	743
MspI	CCGG	3 cut(s)	69, 186, 555
MspR9I	CCNGG	1 cut(s)	647
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	937
MwoI	GCNNNNNNNGC	3 cut(s)	893, 902, 1201
NcoI	CCATGG	1 cut(s)	341
NdeII	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
NheI	GCTAGC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	345, 482, 500, 1166
NlaIV	GGNNCC	4 cut(s)	6, 663, 734, 775
NmuCI	GTSAC	2 cut(s)	953, 1086
NsbI	TGCGCA	2 cut(s)	209, 515
OliI	CACNNNNGTG	1 cut(s)	343
PaeR7I	CTCGAG	2 cut(s)	267, 1217
PfeI	GAWTC	8 cut(s)	219, 335, 383, 581, 866, 1004, 1075, 1150
PkrI	GCNGC	6 cut(s)	529, 544, 841, 895, 936, 1094
PleI	GAGTC	2 cut(s)	301, 950
PpsI	GAGTC	2 cut(s)	301, 950
Ppu21I	YACGTR	1 cut(s)	965
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	4 cut(s)	6, 663, 734, 775
PspPI	GGNCC	1 cut(s)	732
PstNI	CAGNNNCTG	1 cut(s)	998
PsuI	RGATCY	2 cut(s)	366, 661
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	4 cut(s)	438, 454, 963, 1223
RsaNI	GTAC	4 cut(s)	437, 453, 962, 1222
RseI	CAYNNNNRTG	1 cut(s)	343
SaqAI	TTAA	4 cut(s)	447, 606, 858, 972
SatI	GCNGC	6 cut(s)	528, 543, 840, 894, 935, 1093
Sau3AI	GATC	6 cut(s)	366, 571, 612, 619, 661, 1062
Sau96I	GGNCC	1 cut(s)	732
ScaI	AGTACT	1 cut(s)	1223
SchI	GAGTC	2 cut(s)	302, 950
ScrFI	CCNGG	1 cut(s)	647
SduI	GDGCHC	2 cut(s)	246, 274
SfaNI	GCATC	1 cut(s)	609
SfcI	CTRYAG	2 cut(s)	681, 990
Sfr274I	CTCGAG	2 cut(s)	267, 1217
SinI	GGWCC	1 cut(s)	732
SlaI	CTCGAG	2 cut(s)	267, 1217
SmiMI	CAYNNNNRTG	1 cut(s)	343
SmlI	CTYRAG	2 cut(s)	267, 1217
SmoI	CTYRAG	2 cut(s)	267, 1217
Sse9I	AATT	4 cut(s)	19, 151, 547, 763
SsiI	CCGC	2 cut(s)	8, 935
SspMI	CTAG	2 cut(s)	57, 914
StyD4I	CCNGG	1 cut(s)	645
StyI	CCWWGG	2 cut(s)	341, 370
TaaI	ACNGT	1 cut(s)	784
TaiI	ACGT	4 cut(s)	144, 832, 882, 967
TaqI	TCGA	4 cut(s)	268, 864, 948, 1218
TaqII	GACCGA	1 cut(s)	1046
TasI	AATT	4 cut(s)	19, 151, 547, 763
TatI	WGTACW	1 cut(s)	1221
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	8 cut(s)	219, 335, 383, 581, 866, 1004, 1075, 1150
Tru1I	TTAA	4 cut(s)	447, 606, 858, 972
Tru9I	TTAA	4 cut(s)	447, 606, 858, 972
TscAI	CASTG	2 cut(s)	414, 903
TseFI	GTSAC	2 cut(s)	953, 1086
TseI	GCWGC	5 cut(s)	527, 542, 839, 893, 1092
Tsp45I	GTSAC	2 cut(s)	953, 1086
TspDTI	ATGAA	7 cut(s)	90, 117, 220, 495, 580, 594, 666
TspRI	CASTG	2 cut(s)	414, 903
VpaK11BI	GGWCC	1 cut(s)	732
XcmI	CCANNNNNNNNNTGG	1 cut(s)	643
XhoI	CTCGAG	2 cut(s)	267, 1217
XmiI	GTMKAC	2 cut(s)	1106, 1244
XspI	CTAG	2 cut(s)	57, 914
ZrmI	AGTACT	1 cut(s)	1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.