Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0016792

Physical Location & Seq

Genomic Coordinates Forward (+)

34828119 .. 34842343

Gene Structure 14225 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG210100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGCAAGTGAGATGCGTTGACATCCTTCGTGATAGCAAGGGGAATCTTCCTCGCATGTTGAAGAATCTGGACTCATTCTTTATGCTATGTAATGAATGGATGAACAAATATCTCATTGTGAGATGGCACGAGATAGGAGCAGAATCAAAACTGATGCTGGCATCTGGAATGTGTGCTAGCATAGTCTTGTTGATGGCATTGGTTTCAGCTGGTGGACATATTGTGACAACAAGAGATTGCTATAGGAAGGCTCAATATTTATTGAGACCATCCTTCCCAAAATGGGGATCAAGGAATGAATCACAATTTATTGAAAGCATTGTTCAAGAGATCGCAGATCAAGTATTAAAGCCTAAGTCGTATCCGGGTAAATTCAGGCCACTTGAATTACCGGCAGAGGGGAAAATTGGGACAGTTATAGATTCTGTTCCAAGTCCACCTAGTTTGAAGATGCTCCATTGGTCCCGTCCAGCTGAGGGTTATCTGAAGATAAATTATGATGGTGCCTATACTGTGAGGAAGGGAGGTTTAGGTGTGGTTGCTCGGGATACGAAGGGACGTTTTGTGGCAGCAAAGTGTAGGTTGGTTCATAATGTTCAATCGGAAGACGATGTGGTAGCAATGGCAGCACTGGAGGCTCTGTGCCTGGCTAAGGAACTTGGTCGACTGCGAGTTTGTATCGAGGGCGACTCCTTACGTGTTGTGAATGCTCTGCAAACTTCTACTGCTTCCGATGATCATCATTCTGACACTTCCTCCTCCTCATTCGATCAGATCATTAGTGAGATTCAATCCATGTCAAGCAGCAGCTTTCAGCGGACTTCTTTTTCTCATGTTCACCCGCGGAATAATGCTGTTGCCGAGAAACTTGCTACACATGCCTTGACAAAACCCGGAAAAAATCATTGGGTTGGTGACTCCCCTAAGTTTATTTCCCACGACCTGAATTGTGATACATCTGGTTCTTCTTTTTACAACGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RVT_3 zf-RVT

Protein Analysis

328

Amino Acids

36.39

Weight (kDa)

8.66

Isoelectric Point (pI)

46.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cys_Met_Meta_PP	PF01053	46 - 99	5.4e-08	Cys/Met metabolism PLP-dependent enzyme
RVT_3	PF13456	165 - 294	4.2e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016792)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22731 FvH4_3g22731
rosa_laevigata	RLG00000033935
rosa_roxburghii	Rroxscaffold_1G00041550
rosa_samantha	Rh1AG445100 Rh3CG338200 Rh5AG267800 Rh5AG467200 Rh5DG279800 Rh6AG204700 Rh6BG207700 Rh6CG210100
rosa_wichuraiana	Rw5G025030 Rw6G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	503
AccI	GTMKAC	1 cut(s)	664
AccII	CGCG	1 cut(s)	844
AciI	CCGC	3 cut(s)	817, 842, 844
AclWI	GGATC	1 cut(s)	295
AcsI	RAATTY	1 cut(s)	371
AcuI	CTGAAG	1 cut(s)	506
AfiI	CCNNNNNNNGG	5 cut(s)	283, 284, 398, 476, 652
AflIII	ACRYGT	1 cut(s)	697
AgsI	TTSAA	7 cut(s)	61, 314, 326, 386, 448, 599, 791
AjnI	CCWGG	1 cut(s)	645
AjuI	GAANNNNNNNTTGG	2 cut(s)	889, 921
AluBI	AGCT	3 cut(s)	209, 473, 810
AluI	AGCT	3 cut(s)	209, 473, 810
Alw26I	GTCTC	1 cut(s)	259
AlwI	GGATC	1 cut(s)	295
Ama87I	CYCGRG	1 cut(s)	543
AoxI	GGCC	1 cut(s)	377
ApeKI	GCWGC	4 cut(s)	569, 626, 804, 807
ApoI	RAATTY	1 cut(s)	371
ArsI	GACNNNNNNTTYG	2 cut(s)	657, 689
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	2 cut(s)	366, 894
AsuHPI	GGTGA	2 cut(s)	830, 926
AsuNHI	GCTAGC	1 cut(s)	176
AvaI	CYCGRG	1 cut(s)	543
AvaII	GGWCC	1 cut(s)	462
BanI	GGYRCC	1 cut(s)	503
BauI	CACGAG	1 cut(s)	128
BbsI	GAAGAC	1 cut(s)	612
BbvCI	CCTCAGC	1 cut(s)	474
BbvI	GCAGC	4 cut(s)	581, 638, 816, 819
BccI	CCATC	4 cut(s)	117, 187, 277, 494
BcgI	CGANNNNNNTGC	2 cut(s)	851, 885
BciT130I	CCWGG	1 cut(s)	647
BciVI	GTATCC	2 cut(s)	372, 541
BclI	TGATCA	1 cut(s)	736
BcnI	CCSGG	2 cut(s)	366, 894
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	177, 441
BfmI	CTRYAG	1 cut(s)	241
BfuI	GTATCC	2 cut(s)	372, 541
BisI	GCNGC	4 cut(s)	570, 627, 805, 808
BlsI	GCNGC	4 cut(s)	571, 628, 806, 809
Bme1390I	CCNGG	3 cut(s)	366, 647, 894
Bme18I	GGWCC	1 cut(s)	462
BmeT110I	CYCGRG	1 cut(s)	543
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	2 cut(s)	464, 505
BmrFI	CCNGG	3 cut(s)	366, 647, 894
BmsI	GCATC	4 cut(s)	2, 144, 170, 441
BmtI	GCTAGC	1 cut(s)	180
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
BpmI	CTGGAG	1 cut(s)	653
Bpu10I	CCTNAGC	2 cut(s)	474, 651
BpuMI	CCSGG	2 cut(s)	366, 894
BsaAI	YACGTR	1 cut(s)	698
BsaBI	GATNNNNATC	1 cut(s)	738
BsaI	GGTCTC	1 cut(s)	259
BsaJI	CCNNGG	1 cut(s)	842
BsaXI	ACNNNNNCTCC	4 cut(s)	626, 656, 740, 770
Bsc4I	CCNNNNNNNGG	5 cut(s)	283, 284, 398, 476, 652
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	636
Bse3DI	GCAATG	1 cut(s)	627
Bse8I	GATNNNNATC	1 cut(s)	738
BseBI	CCWGG	1 cut(s)	647
BseDI	CCNNGG	1 cut(s)	842
BseGI	GGATG	3 cut(s)	21, 105, 269
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	5 cut(s)	283, 284, 398, 476, 652
BseMI	GCAATG	1 cut(s)	627
BseMII	CTCAG	1 cut(s)	465
BseNI	ACTGG	1 cut(s)	636
BseRI	GAGGAG	2 cut(s)	748, 751
BseXI	GCAGC	4 cut(s)	581, 638, 816, 819
Bsh1236I	CGCG	1 cut(s)	844
BshFI	GGCC	1 cut(s)	379
BshNI	GGYRCC	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	543
BsiSI	CCGG	3 cut(s)	365, 392, 894
BslFI	GGGAC	3 cut(s)	424, 448, 570
BslI	CCNNNNNNNGG	5 cut(s)	283, 284, 398, 476, 652
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	424, 448, 570
BsmI	GAATGC	1 cut(s)	712
BsnI	GGCC	1 cut(s)	379
Bso31I	GGTCTC	1 cut(s)	259
BsoBI	CYCGRG	1 cut(s)	543
Bsp143I	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
BspACI	CCGC	3 cut(s)	817, 842, 844
BspANI	GGCC	1 cut(s)	379
BspCNI	CTCAG	1 cut(s)	466
BspFNI	CGCG	1 cut(s)	844
BspLI	GGNNCC	2 cut(s)	464, 505
BspOI	GCTAGC	1 cut(s)	180
BspPI	GGATC	1 cut(s)	295
BspT107I	GGYRCC	1 cut(s)	503
BspTNI	GGTCTC	1 cut(s)	259
BsrDI	GCAATG	1 cut(s)	627
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	636
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	842
BssMI	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
BssSI	CACGAG	1 cut(s)	128
Bst2BI	CACGAG	1 cut(s)	128
Bst2UI	CCWGG	1 cut(s)	647
Bst4CI	ACNGT	2 cut(s)	415, 514
BstBAI	YACGTR	1 cut(s)	698
BstC8I	GCNNGC	2 cut(s)	159, 178
BstDEI	CTNAG	4 cut(s)	354, 474, 651, 924
BstDSI	CCRYGG	1 cut(s)	842
BstENI	CCTNNNNNAGG	1 cut(s)	650
BstF5I	GGATG	3 cut(s)	21, 105, 269
BstFNI	CGCG	1 cut(s)	844
BstKTI	GATC	6 cut(s)	290, 333, 340, 739, 772, 777
BstMAI	GTCTC	1 cut(s)	259
BstMBI	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
BstMWI	GCNNNNNNNGC	3 cut(s)	626, 635, 878
BstNI	CCWGG	1 cut(s)	647
BstNSI	RCATGY	2 cut(s)	58, 881
BstSCI	CCNGG	3 cut(s)	364, 645, 892
BstSFI	CTRYAG	1 cut(s)	241
BstUI	CGCG	1 cut(s)	844
BstV1I	GCAGC	4 cut(s)	581, 638, 816, 819
BstV2I	GAAGAC	1 cut(s)	612
BsuI	GTATCC	2 cut(s)	372, 541
BsuRI	GGCC	1 cut(s)	379
BtgI	CCRYGG	1 cut(s)	842
BtsCI	GGATG	3 cut(s)	21, 105, 269
BtsIMutI	CAGTG	1 cut(s)	629
Cac8I	GCNNGC	2 cut(s)	159, 178
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	462
Cfr42I	CCGCGG	1 cut(s)	845
CspCI	CAANNNNNGTGG	2 cut(s)	426, 461
CviAII	CATG	4 cut(s)	55, 796, 833, 878
CviJI	RGCY	8 cut(s)	209, 251, 352, 379, 473, 638, 650, 810
CviKI_1	RGCY	8 cut(s)	209, 251, 352, 379, 473, 638, 650, 810
DdeI	CTNAG	4 cut(s)	354, 474, 651, 924
DpnI	GATC	6 cut(s)	289, 332, 339, 738, 771, 776
DpnII	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
Eco31I	GGTCTC	1 cut(s)	259
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	543
EcoNI	CCTNNNNNAGG	1 cut(s)	650
EcoRII	CCWGG	1 cut(s)	645
FaeI	CATG	4 cut(s)	58, 799, 836, 881
FaqI	GGGAC	3 cut(s)	424, 448, 570
FatI	CATG	4 cut(s)	54, 795, 832, 877
FauI	CCCGC	1 cut(s)	849
FbaI	TGATCA	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	664
Fnu4HI	GCNGC	4 cut(s)	570, 627, 805, 808
FokI	GGATG	3 cut(s)	8, 112, 256
Fsp4HI	GCNGC	4 cut(s)	570, 627, 805, 808
FspBI	CTAG	2 cut(s)	177, 441
GluI	GCNGC	4 cut(s)	570, 627, 805, 808
GsuI	CTGGAG	1 cut(s)	653
HaeIII	GGCC	1 cut(s)	379
HapII	CCGG	3 cut(s)	365, 392, 894
Hin1II	CATG	4 cut(s)	58, 799, 836, 881
HincII	GTYRAC	2 cut(s)	19, 665
HindII	GTYRAC	2 cut(s)	19, 665
HinfI	GANTC	9 cut(s)	43, 64, 71, 143, 299, 422, 689, 787, 917
HpaII	CCGG	3 cut(s)	365, 392, 894
HphI	GGTGA	2 cut(s)	830, 926
Hpy166II	GTNNAC	5 cut(s)	19, 215, 437, 665, 838
Hpy188I	TCNGA	5 cut(s)	486, 604, 733, 748, 774
Hpy188III	TCNNGA	5 cut(s)	29, 68, 165, 326, 545
Hpy8I	GTNNAC	5 cut(s)	19, 215, 437, 665, 838
HpyAV	CCTTC	5 cut(s)	35, 241, 283, 514, 547
HpyCH4III	ACNGT	2 cut(s)	415, 514
HpyCH4IV	ACGT	2 cut(s)	559, 697
HpyCH4V	TGCA	2 cut(s)	4, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	626, 635, 878
HpyF3I	CTNAG	4 cut(s)	354, 474, 651, 924
HpySE526I	ACGT	2 cut(s)	559, 697
Hsp92II	CATG	4 cut(s)	58, 799, 836, 881
Ksp22I	TGATCA	1 cut(s)	736
KspI	CCGCGG	1 cut(s)	845
Kzo9I	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
LmnI	GCTCC	2 cut(s)	137, 459
Lsp1109I	GCAGC	4 cut(s)	581, 638, 816, 819
LweI	GCATC	4 cut(s)	2, 144, 170, 441
MaeI	CTAG	2 cut(s)	177, 441
MaeII	ACGT	2 cut(s)	559, 697
MaeIII	GTNAC	2 cut(s)	223, 914
MalI	GATC	6 cut(s)	289, 332, 339, 738, 771, 776
MboI	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
MboII	GAAGA	6 cut(s)	38, 73, 460, 499, 617, 957
MluCI	AATT	6 cut(s)	305, 371, 386, 405, 493, 946
MlyI	GAGTC	3 cut(s)	65, 683, 911
MseI	TTAA	1 cut(s)	347
MspA1I	CMGCKG	4 cut(s)	209, 473, 817, 844
MspI	CCGG	3 cut(s)	365, 392, 894
MspR9I	CCNGG	3 cut(s)	366, 647, 894
Mva1269I	GAATGC	1 cut(s)	712
MvaI	CCWGG	1 cut(s)	647
MvnI	CGCG	1 cut(s)	844
MwoI	GCNNNNNNNGC	3 cut(s)	626, 635, 878
NciI	CCSGG	2 cut(s)	366, 894
NdeII	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	4 cut(s)	58, 799, 836, 881
NlaIV	GGNNCC	2 cut(s)	464, 505
NmeAIII	GCCGAG	1 cut(s)	886
NmuCI	GTSAC	2 cut(s)	223, 914
NspI	RCATGY	2 cut(s)	58, 881
PctI	GAATGC	1 cut(s)	712
PfeI	GAWTC	6 cut(s)	43, 64, 143, 299, 422, 787
PkrI	GCNGC	4 cut(s)	571, 628, 806, 809
PleI	GAGTC	3 cut(s)	65, 683, 911
PpsI	GAGTC	3 cut(s)	65, 683, 911
Ppu21I	YACGTR	1 cut(s)	698
Psp6I	CCWGG	1 cut(s)	645
PspGI	CCWGG	1 cut(s)	645
PspN4I	GGNNCC	2 cut(s)	464, 505
PspPI	GGNCC	1 cut(s)	462
PvuII	CAGCTG	2 cut(s)	209, 473
SacII	CCGCGG	1 cut(s)	845
SalI	GTCGAC	1 cut(s)	663
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	4 cut(s)	570, 627, 805, 808
Sau3AI	GATC	6 cut(s)	287, 330, 337, 736, 769, 774
Sau96I	GGNCC	1 cut(s)	462
SchI	GAGTC	3 cut(s)	65, 683, 911
ScrFI	CCNGG	3 cut(s)	366, 647, 894
SfaNI	GCATC	4 cut(s)	2, 144, 170, 441
SfcI	CTRYAG	1 cut(s)	241
Sfr303I	CCGCGG	1 cut(s)	845
SgrBI	CCGCGG	1 cut(s)	845
SinI	GGWCC	1 cut(s)	462
Sse9I	AATT	6 cut(s)	305, 371, 386, 405, 493, 946
SsiI	CCGC	3 cut(s)	817, 842, 844
SspI	AATATT	1 cut(s)	257
SspMI	CTAG	2 cut(s)	177, 441
StyD4I	CCNGG	3 cut(s)	364, 645, 892
TaaI	ACNGT	2 cut(s)	415, 514
TaiI	ACGT	2 cut(s)	562, 700
TaqI	TCGA	3 cut(s)	664, 681, 768
TasI	AATT	6 cut(s)	305, 371, 386, 405, 493, 946
TfiI	GAWTC	6 cut(s)	43, 64, 143, 299, 422, 787
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	636
TseFI	GTSAC	2 cut(s)	223, 914
TseI	GCWGC	4 cut(s)	569, 626, 804, 807
Tsp45I	GTSAC	2 cut(s)	223, 914
TspDTI	ATGAA	4 cut(s)	108, 116, 312, 578
TspRI	CASTG	1 cut(s)	636
VpaK11BI	GGWCC	1 cut(s)	462
XagI	CCTNNNNNAGG	1 cut(s)	650
XapI	RAATTY	1 cut(s)	371
XceI	RCATGY	2 cut(s)	58, 881
XmiI	GTMKAC	1 cut(s)	664
XspI	CTAG	2 cut(s)	177, 441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.