Rh6BG207700

zinc-binding in reverse transcriptase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0016792
Physical Location & Seq
Forward (+)
39105110 .. 39106091
982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG207700.1

Sequence Viewer

Length: 765 bp
ATGATTGTGCGCAGATGGAAGGCAGCTCTTTACGAAGCAGCAAATTTGTCAGGATGGCCTTTCATGGATGAGAATGAATCACAATTTATTGAAAGCATTGTTCAAGAGATCGCAGATCAAGAATTAAAGCCTAAGTCGTATCCAGGTAAATTCAGGCCACTTGAATTACCGGCAAAGGGGAAAATTGGGACAGTTATAGATTCTGTTCCAAGTCCACCTAGTTTGAAGATGCTCCATTGGTCCCGTCCAGCTGAGGGTTATCTGAAGATAAATTATGATGGTGCCTATACTGTGAGGAAGGGAGGTTTAGGTGTGGTTGCTCGGGATACGAAGGGACGTTTTGTGGCAGCAAAGTGTAGGTTGGTTAATAATGTTCAATCGGAAGGCGATGTGGTAGCAATGGCAGCACTGGAGGCTCTGTGCCTGGCTAAGGAACTTGGTCGACTGCGAGTTTGTATCGAGGGCGACTCCTTACGTGTTGTGAATGCTCTGCAAACTTCTACTGCTTCTGATGATCATCATTCTGACACTTCCTCCTCCTCATTCGATCAGATCATTAGTGAGATTCAATCCATGTCAAGCAGCAGCTTTCAGCGGACTTCTTTTTCTCATGTTCACCCGCGGAATAATGCTGTTGCCGAGAAACTTGCTACACATGCCTTGACAAAACCCGGAAAAAATCATTGGGTTGGTGATTCCCCTAAGTTTATTTCCCACGACCTGAATTGTGATACATCTGGTTCTTCTTTTTACAACGAGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

254

Amino Acids

27.92

Weight (kDa)

7.08

Isoelectric Point (pI)

51.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 91 - 220 2.8e-17 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 11
AccB1I GGYRCC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 442
AccII CGCG 1 cut(s) 622
AciI CCGC 3 cut(s) 595, 620, 622
AcsI RAATTY 2 cut(s) 43, 149
AcuI CTGAAG 1 cut(s) 284
AfiI CCNNNNNNNGG 3 cut(s) 176, 254, 430
AflIII ACRYGT 1 cut(s) 475
AgsI TTSAA 6 cut(s) 92, 104, 164, 226, 377, 569
AjnI CCWGG 2 cut(s) 142, 423
AjuI GAANNNNNNNTTGG 2 cut(s) 667, 699
AluBI AGCT 3 cut(s) 26, 251, 588
AluI AGCT 3 cut(s) 26, 251, 588
Ama87I CYCGRG 1 cut(s) 321
AoxI GGCC 2 cut(s) 56, 155
ApeKI GCWGC 6 cut(s) 23, 38, 347, 404, 582, 585
ApoI RAATTY 2 cut(s) 43, 149
ArsI GACNNNNNNTTYG 2 cut(s) 435, 467
AspLEI GCGC 1 cut(s) 12
AspS9I GGNCC 1 cut(s) 240
AsuC2I CCSGG 1 cut(s) 672
AsuHPI GGTGA 2 cut(s) 608, 704
AvaI CYCGRG 1 cut(s) 321
AvaII GGWCC 1 cut(s) 240
BanI GGYRCC 1 cut(s) 281
BbvCI CCTCAGC 1 cut(s) 252
BbvI GCAGC 6 cut(s) 35, 50, 359, 416, 594, 597
BccI CCATC 3 cut(s) 9, 48, 272
BcgI CGANNNNNNTGC 2 cut(s) 629, 663
BciT130I CCWGG 2 cut(s) 144, 425
BciVI GTATCC 2 cut(s) 150, 319
BclI TGATCA 1 cut(s) 514
BcnI CCSGG 1 cut(s) 672
BfaI CTAG 1 cut(s) 219
BfuI GTATCC 2 cut(s) 150, 319
BisI GCNGC 6 cut(s) 24, 39, 348, 405, 583, 586
BlsI GCNGC 6 cut(s) 25, 40, 349, 406, 584, 587
Bme1390I CCNGG 3 cut(s) 144, 425, 672
Bme18I GGWCC 1 cut(s) 240
BmeT110I CYCGRG 1 cut(s) 321
BmgT120I GGNCC 1 cut(s) 240
BmiI GGNNCC 2 cut(s) 242, 283
BmrFI CCNGG 3 cut(s) 144, 425, 672
BmsI GCATC 1 cut(s) 219
BplI GAGNNNNNCTC 2 cut(s) 452, 484
BpmI CTGGAG 1 cut(s) 431
Bpu10I CCTNAGC 2 cut(s) 252, 429
BpuMI CCSGG 1 cut(s) 672
BsaAI YACGTR 1 cut(s) 476
BsaBI GATNNNNATC 1 cut(s) 516
BsaJI CCNNGG 1 cut(s) 620
BsaXI ACNNNNNCTCC 4 cut(s) 404, 434, 518, 548
Bsc4I CCNNNNNNNGG 3 cut(s) 176, 254, 430
Bse118I RCCGGY 1 cut(s) 169
Bse1I ACTGG 1 cut(s) 414
Bse3DI GCAATG 1 cut(s) 405
Bse8I GATNNNNATC 1 cut(s) 516
BseBI CCWGG 2 cut(s) 144, 425
BseDI CCNNGG 1 cut(s) 620
BseGI GGATG 2 cut(s) 59, 73
BseJI GATNNNNATC 1 cut(s) 516
BseLI CCNNNNNNNGG 3 cut(s) 176, 254, 430
BseMI GCAATG 1 cut(s) 405
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 1 cut(s) 414
BseRI GAGGAG 2 cut(s) 526, 529
BseXI GCAGC 6 cut(s) 35, 50, 359, 416, 594, 597
Bsh1236I CGCG 1 cut(s) 622
BshFI GGCC 2 cut(s) 58, 157
BshNI GGYRCC 1 cut(s) 281
BsiHKCI CYCGRG 1 cut(s) 321
BsiSI CCGG 2 cut(s) 170, 672
BslFI GGGAC 3 cut(s) 202, 226, 348
BslI CCNNNNNNNGG 3 cut(s) 176, 254, 430
BsmFI GGGAC 3 cut(s) 202, 226, 348
BsmI GAATGC 1 cut(s) 490
BsnI GGCC 2 cut(s) 58, 157
BsoBI CYCGRG 1 cut(s) 321
Bsp143I GATC 5 cut(s) 108, 115, 514, 547, 552
BspACI CCGC 3 cut(s) 595, 620, 622
BspANI GGCC 2 cut(s) 58, 157
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 1 cut(s) 622
BspLI GGNNCC 2 cut(s) 242, 283
BspT107I GGYRCC 1 cut(s) 281
BsrDI GCAATG 1 cut(s) 405
BsrFI RCCGGY 1 cut(s) 169
BsrI ACTGG 1 cut(s) 414
BssAI RCCGGY 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 620
BssMI GATC 5 cut(s) 108, 115, 514, 547, 552
Bst2UI CCWGG 2 cut(s) 144, 425
Bst4CI ACNGT 2 cut(s) 193, 292
BstBAI YACGTR 1 cut(s) 476
BstDEI CTNAG 4 cut(s) 132, 252, 429, 702
BstDSI CCRYGG 1 cut(s) 620
BstENI CCTNNNNNAGG 1 cut(s) 428
BstF5I GGATG 2 cut(s) 59, 73
BstFNI CGCG 1 cut(s) 622
BstHHI GCGC 1 cut(s) 12
BstKTI GATC 5 cut(s) 111, 118, 517, 550, 555
BstMBI GATC 5 cut(s) 108, 115, 514, 547, 552
BstMWI GCNNNNNNNGC 3 cut(s) 404, 413, 656
BstNI CCWGG 2 cut(s) 144, 425
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 3 cut(s) 142, 423, 670
BstUI CGCG 1 cut(s) 622
BstV1I GCAGC 6 cut(s) 35, 50, 359, 416, 594, 597
BsuI GTATCC 2 cut(s) 150, 319
BsuRI GGCC 2 cut(s) 58, 157
BtgI CCRYGG 1 cut(s) 620
BtgZI GCGATG 1 cut(s) 402
BtsCI GGATG 2 cut(s) 59, 73
BtsIMutI CAGTG 1 cut(s) 407
CfoI GCGC 1 cut(s) 12
Cfr10I RCCGGY 1 cut(s) 169
Cfr13I GGNCC 1 cut(s) 240
Cfr42I CCGCGG 1 cut(s) 623
CspCI CAANNNNNGTGG 2 cut(s) 204, 239
CviAII CATG 4 cut(s) 64, 574, 611, 656
CviJI RGCY 8 cut(s) 26, 58, 130, 157, 251, 416, 428, 588
CviKI_1 RGCY 8 cut(s) 26, 58, 130, 157, 251, 416, 428, 588
DdeI CTNAG 4 cut(s) 132, 252, 429, 702
DpnI GATC 5 cut(s) 110, 117, 516, 549, 554
DpnII GATC 5 cut(s) 108, 115, 514, 547, 552
Eco47I GGWCC 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 284
Eco88I CYCGRG 1 cut(s) 321
EcoNI CCTNNNNNAGG 1 cut(s) 428
EcoRII CCWGG 2 cut(s) 142, 423
FaeI CATG 4 cut(s) 67, 577, 614, 659
FaiI YATR 7 cut(s) 65, 197, 276, 288, 575, 612, 657
FaqI GGGAC 3 cut(s) 202, 226, 348
FatI CATG 4 cut(s) 63, 573, 610, 655
FauI CCCGC 1 cut(s) 627
FbaI TGATCA 1 cut(s) 514
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 6 cut(s) 24, 39, 348, 405, 583, 586
FokI GGATG 2 cut(s) 66, 80
Fsp4HI GCNGC 6 cut(s) 24, 39, 348, 405, 583, 586
FspBI CTAG 1 cut(s) 219
FspI TGCGCA 1 cut(s) 11
GlaI GCGC 1 cut(s) 11
GluI GCNGC 6 cut(s) 24, 39, 348, 405, 583, 586
GsuI CTGGAG 1 cut(s) 431
HaeIII GGCC 2 cut(s) 58, 157
HapII CCGG 2 cut(s) 170, 672
HhaI GCGC 1 cut(s) 12
Hin1II CATG 4 cut(s) 67, 577, 614, 659
Hin6I GCGC 1 cut(s) 10
HinP1I GCGC 1 cut(s) 10
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HinfI GANTC 5 cut(s) 77, 200, 467, 565, 695
HpaII CCGG 2 cut(s) 170, 672
HphI GGTGA 2 cut(s) 608, 704
Hpy166II GTNNAC 3 cut(s) 215, 443, 616
Hpy188I TCNGA 5 cut(s) 264, 382, 511, 526, 552
Hpy188III TCNNGA 4 cut(s) 51, 104, 119, 323
Hpy8I GTNNAC 3 cut(s) 215, 443, 616
HpyAV CCTTC 4 cut(s) 13, 292, 325, 377
HpyCH4III ACNGT 2 cut(s) 193, 292
HpyCH4IV ACGT 2 cut(s) 337, 475
HpyCH4V TGCA 1 cut(s) 493
HpyF10VI GCNNNNNNNGC 3 cut(s) 404, 413, 656
HpyF3I CTNAG 4 cut(s) 132, 252, 429, 702
HpySE526I ACGT 2 cut(s) 337, 475
Hsp92II CATG 4 cut(s) 67, 577, 614, 659
HspAI GCGC 1 cut(s) 10
Ksp22I TGATCA 1 cut(s) 514
KspI CCGCGG 1 cut(s) 623
Kzo9I GATC 5 cut(s) 108, 115, 514, 547, 552
LmnI GCTCC 1 cut(s) 237
Lsp1109I GCAGC 6 cut(s) 35, 50, 359, 416, 594, 597
LweI GCATC 1 cut(s) 219
MaeI CTAG 1 cut(s) 219
MaeII ACGT 2 cut(s) 337, 475
MalI GATC 5 cut(s) 110, 117, 516, 549, 554
MboI GATC 5 cut(s) 108, 115, 514, 547, 552
MboII GAAGA 3 cut(s) 238, 277, 735
MluCI AATT 8 cut(s) 43, 83, 122, 149, 164, 183, 271, 724
MlyI GAGTC 1 cut(s) 461
MnlI CCTC 8 cut(s) 247, 288, 296, 406, 454, 544, 547, 550
MseI TTAA 2 cut(s) 125, 366
MspA1I CMGCKG 3 cut(s) 251, 595, 622
MspI CCGG 2 cut(s) 170, 672
MspR9I CCNGG 3 cut(s) 144, 425, 672
Mva1269I GAATGC 1 cut(s) 490
MvaI CCWGG 2 cut(s) 144, 425
MvnI CGCG 1 cut(s) 622
MwoI GCNNNNNNNGC 3 cut(s) 404, 413, 656
NciI CCSGG 1 cut(s) 672
NdeII GATC 5 cut(s) 108, 115, 514, 547, 552
NlaIII CATG 4 cut(s) 67, 577, 614, 659
NlaIV GGNNCC 2 cut(s) 242, 283
NmeAIII GCCGAG 1 cut(s) 664
NsbI TGCGCA 1 cut(s) 11
NspI RCATGY 1 cut(s) 659
PctI GAATGC 1 cut(s) 490
PfeI GAWTC 4 cut(s) 77, 200, 565, 695
PkrI GCNGC 6 cut(s) 25, 40, 349, 406, 584, 587
PleI GAGTC 1 cut(s) 461
PpsI GAGTC 1 cut(s) 461
Ppu21I YACGTR 1 cut(s) 476
Psp6I CCWGG 2 cut(s) 142, 423
PspGI CCWGG 2 cut(s) 142, 423
PspN4I GGNNCC 2 cut(s) 242, 283
PspPI GGNCC 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 251
SacII CCGCGG 1 cut(s) 623
SalI GTCGAC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 125, 366
SatI GCNGC 6 cut(s) 24, 39, 348, 405, 583, 586
Sau3AI GATC 5 cut(s) 108, 115, 514, 547, 552
Sau96I GGNCC 1 cut(s) 240
SchI GAGTC 1 cut(s) 461
ScrFI CCNGG 3 cut(s) 144, 425, 672
SfaNI GCATC 1 cut(s) 219
Sfr303I CCGCGG 1 cut(s) 623
SgrBI CCGCGG 1 cut(s) 623
SinI GGWCC 1 cut(s) 240
Sse9I AATT 8 cut(s) 43, 83, 122, 149, 164, 183, 271, 724
SsiI CCGC 3 cut(s) 595, 620, 622
SspMI CTAG 1 cut(s) 219
StyD4I CCNGG 3 cut(s) 142, 423, 670
TaaI ACNGT 2 cut(s) 193, 292
TaiI ACGT 2 cut(s) 340, 478
TaqI TCGA 3 cut(s) 442, 459, 546
TasI AATT 8 cut(s) 43, 83, 122, 149, 164, 183, 271, 724
TfiI GAWTC 4 cut(s) 77, 200, 565, 695
Tru1I TTAA 2 cut(s) 125, 366
Tru9I TTAA 2 cut(s) 125, 366
TscAI CASTG 1 cut(s) 414
TseI GCWGC 6 cut(s) 23, 38, 347, 404, 582, 585
TspDTI ATGAA 2 cut(s) 52, 90
TspRI CASTG 1 cut(s) 414
VpaK11BI GGWCC 1 cut(s) 240
XagI CCTNNNNNAGG 1 cut(s) 428
XapI RAATTY 2 cut(s) 43, 149
XceI RCATGY 1 cut(s) 659
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.