Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0016792

Physical Location & Seq

Genomic Coordinates Forward (+)

35137286 .. 35138711

Gene Structure 1426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1215 bp

ATGGCTCGTAGGACCACTCAAGAACCCTCTTCTTCTGCTGCTGGTTCTTCTACTTCTTCTTCGGTCCCCATTTCATACCAACACGATGTGTTTCTGAGTTTTAGAGGCGAAGATACACGCTCTAATTTTTCAGGTCATCTGTACACAGCTTTGCGCAACAAAGGAATTAAGACCTTCATAGACGATGGGCTAAAAAGAGGAGAAGAAATATCTTTAGCACTTTTCAAAGCAATCAATGAGTCAAGGATGTCTGTCATTGTGTTCTCTGAAAACTATGCGAAATCACCATGGTGTTTGAACGAACTCGTTGAGATCCTTGGGTGTAGAGAATCAAAACAGCAGATGGTTAGACCGATTTTTTACAAAGTCAAACCCTCTCATGTCCGACACATGGGAGGTACTTTTGGTGATGCACTTGCACAACATGAAATCGATTTTGAGCATGATATTATGATTGTGCGCAGATGGAAGGCAGCTCTTTACGAAGCAGCAAATTTGTCAGGATGGCCTTTCATGGATGAGAATGAATCACAATTTATTGAAAGCATTGTTCAAGAGATCGCAGATCAAGTATTAAAGCCTAAGTCGTATCCAGGTAAATTCAGGCCACTTGAATTACCGGCAGAGGGGAAAATTGGGACAGTTATAGATTCTGTTCCAAGTCCACCTAGTTTGAAGATGCTCCATTGGTCCCGTCCAGCTGAGGGTTATCTGAAGATAAATTATGATGGTGCCTATACCGTGAGGAAGGGAGGTTTAGGTGTGGTTGCTCGGGATACGAAGGGACGTTTTGTGGCAGCAAAGTGTAGGTTGGTTAATAATGTTCAATCGGAAGACGATGTGGTAGCAATGGCAGCACTGGAGGCTCTGTTCCTGGCTAAGGAACTTGGTCGACTGCGAGTTTGTATCGAGGGCGACTCCTTACGTGTTGTGAATGCTCTGCAAACTTCTACTGCTTCTGATGATCATCATTCTGACACTTCCTCCTCCTCATTCGATCAGATCATTAGTGAGATTCAATCCATGTCAAGCAGCAGCTTTCAGCGGACTTCTTTTTCTCATGTTCACCCGCGGAATAATGCTGTTGCCGAGAAACTTGCTACACATGCCTTGACAAAACCCGGAAAAAATCATTGGGTTGGTGATTCCCCTAAGTTTATTTCCCACGACCTGAATTGTGATACATCTGGTTCTTCTTTTTACAACGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NB-ARC TIR

Protein Analysis

404

Amino Acids

44.84

Weight (kDa)

6.71

Isoelectric Point (pI)

52.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	28 - 191	7.8e-50	TIR domain
TIR_2	PF13676	30 - 125	1.6e-14	TIR domain
RVT_3	PF13456	241 - 370	6.2e-17	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016792)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g22731 FvH4_3g22731
rosa_laevigata	RLG00000033935
rosa_roxburghii	Rroxscaffold_1G00041550
rosa_samantha	Rh1AG445100 Rh3CG338200 Rh5AG267800 Rh5AG467200 Rh5DG279800 Rh6AG204700 Rh6BG207700 Rh6CG210100
rosa_wichuraiana	Rw5G025030 Rw6G017770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	2 cut(s)	155, 461
AccB1I	GGYRCC	1 cut(s)	731
AccI	GTMKAC	1 cut(s)	892
AccII	CGCG	1 cut(s)	1072
AciI	CCGC	3 cut(s)	1045, 1070, 1072
AclWI	GGATC	1 cut(s)	307
AcsI	RAATTY	2 cut(s)	493, 599
AcuI	CTGAAG	1 cut(s)	734
AdeI	CACNNNGTG	1 cut(s)	88
AfaI	GTAC	2 cut(s)	143, 400
AfiI	CCNNNNNNNGG	4 cut(s)	391, 626, 704, 880
AflIII	ACRYGT	1 cut(s)	925
AgsI	TTSAA	8 cut(s)	226, 298, 542, 554, 614, 676, 827, 1019
AjnI	CCWGG	2 cut(s)	592, 873
AjuI	GAANNNNNNNTTGG	2 cut(s)	1117, 1149
AleI	CACNNNNGTG	1 cut(s)	289
AloI	GAACNNNNNNTCC	2 cut(s)	854, 886
AluBI	AGCT	4 cut(s)	149, 476, 701, 1038
AluI	AGCT	4 cut(s)	149, 476, 701, 1038
AlwI	GGATC	1 cut(s)	307
Ama87I	CYCGRG	1 cut(s)	771
AoxI	GGCC	2 cut(s)	506, 605
ApeKI	GCWGC	7 cut(s)	38, 473, 488, 797, 854, 1032, 1035
ApoI	RAATTY	2 cut(s)	493, 599
ArsI	GACNNNNNNTTYG	2 cut(s)	885, 917
AspLEI	GCGC	2 cut(s)	156, 462
AspS9I	GGNCC	3 cut(s)	12, 64, 690
AsuC2I	CCSGG	1 cut(s)	1122
AsuHPI	GGTGA	4 cut(s)	276, 419, 1058, 1154
AvaI	CYCGRG	1 cut(s)	771
AvaII	GGWCC	3 cut(s)	12, 64, 690
BanI	GGYRCC	1 cut(s)	731
BbsI	GAAGAC	1 cut(s)	840
BbvCI	CCTCAGC	1 cut(s)	702
BbvI	GCAGC	7 cut(s)	25, 485, 500, 809, 866, 1044, 1047
BccI	CCATC	5 cut(s)	179, 337, 459, 498, 722
BcgI	CGANNNNNNTGC	2 cut(s)	1079, 1113
BciT130I	CCWGG	2 cut(s)	594, 875
BciVI	GTATCC	2 cut(s)	600, 769
BclI	TGATCA	1 cut(s)	964
BcnI	CCSGG	1 cut(s)	1122
BfaI	CTAG	1 cut(s)	669
BfuI	GTATCC	2 cut(s)	600, 769
BisI	GCNGC	7 cut(s)	39, 474, 489, 798, 855, 1033, 1036
BlsI	GCNGC	7 cut(s)	40, 475, 490, 799, 856, 1034, 1037
Bme1390I	CCNGG	3 cut(s)	594, 875, 1122
Bme18I	GGWCC	3 cut(s)	12, 64, 690
BmeT110I	CYCGRG	1 cut(s)	771
BmgT120I	GGNCC	3 cut(s)	12, 64, 690
BmiI	GGNNCC	3 cut(s)	66, 692, 733
BmrFI	CCNGG	3 cut(s)	594, 875, 1122
BmsI	GCATC	2 cut(s)	400, 669
BpiI	GAAGAC	1 cut(s)	840
BplI	GAGNNNNNCTC	2 cut(s)	902, 934
BpmI	CTGGAG	1 cut(s)	881
Bpu10I	CCTNAGC	2 cut(s)	702, 879
BpuMI	CCSGG	1 cut(s)	1122
Bsa29I	ATCGAT	1 cut(s)	432
BsaAI	YACGTR	1 cut(s)	926
BsaBI	GATNNNNATC	1 cut(s)	966
BsaJI	CCNNGG	3 cut(s)	287, 316, 1070
BsaXI	ACNNNNNCTCC	4 cut(s)	854, 884, 968, 998
Bsc4I	CCNNNNNNNGG	4 cut(s)	391, 626, 704, 880
Bse118I	RCCGGY	1 cut(s)	619
Bse1I	ACTGG	1 cut(s)	864
Bse3DI	GCAATG	1 cut(s)	855
Bse8I	GATNNNNATC	1 cut(s)	966
BseBI	CCWGG	2 cut(s)	594, 875
BseCI	ATCGAT	1 cut(s)	432
BseDI	CCNNGG	3 cut(s)	287, 316, 1070
BseGI	GGATG	3 cut(s)	252, 509, 523
BseJI	GATNNNNATC	1 cut(s)	966
BseLI	CCNNNNNNNGG	4 cut(s)	391, 626, 704, 880
BseMI	GCAATG	1 cut(s)	855
BseMII	CTCAG	2 cut(s)	86, 693
BseNI	ACTGG	1 cut(s)	864
BseRI	GAGGAG	3 cut(s)	213, 976, 979
BseXI	GCAGC	7 cut(s)	25, 485, 500, 809, 866, 1044, 1047
Bsh1236I	CGCG	1 cut(s)	1072
BshFI	GGCC	2 cut(s)	508, 607
BshNI	GGYRCC	1 cut(s)	731
BshVI	ATCGAT	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	771
BsiSI	CCGG	2 cut(s)	620, 1122
BslFI	GGGAC	4 cut(s)	50, 652, 676, 798
BslI	CCNNNNNNNGG	4 cut(s)	391, 626, 704, 880
BsmFI	GGGAC	4 cut(s)	50, 652, 676, 798
BsmI	GAATGC	1 cut(s)	940
BsnI	GGCC	2 cut(s)	508, 607
BsoBI	CYCGRG	1 cut(s)	771
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
Bsp19I	CCATGG	1 cut(s)	287
BspACI	CCGC	3 cut(s)	1045, 1070, 1072
BspANI	GGCC	2 cut(s)	508, 607
BspCNI	CTCAG	2 cut(s)	87, 694
BspDI	ATCGAT	1 cut(s)	432
BspFNI	CGCG	1 cut(s)	1072
BspLI	GGNNCC	3 cut(s)	66, 692, 733
BspPI	GGATC	1 cut(s)	307
BspT107I	GGYRCC	1 cut(s)	731
BsrDI	GCAATG	1 cut(s)	855
BsrFI	RCCGGY	1 cut(s)	619
BsrGI	TGTACA	1 cut(s)	141
BsrI	ACTGG	1 cut(s)	864
BssAI	RCCGGY	1 cut(s)	619
BssECI	CCNNGG	3 cut(s)	287, 316, 1070
BssMI	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
BssT1I	CCWWGG	2 cut(s)	287, 316
Bst2UI	CCWGG	2 cut(s)	594, 875
Bst4CI	ACNGT	2 cut(s)	643, 742
Bst6I	CTCTTC	1 cut(s)	34
BstAUI	TGTACA	1 cut(s)	141
BstBAI	YACGTR	1 cut(s)	926
BstDEI	CTNAG	5 cut(s)	95, 582, 702, 879, 1152
BstDSI	CCRYGG	2 cut(s)	287, 1070
BstENI	CCTNNNNNAGG	1 cut(s)	878
BstF5I	GGATG	3 cut(s)	252, 509, 523
BstFNI	CGCG	1 cut(s)	1072
BstHHI	GCGC	2 cut(s)	156, 462
BstKTI	GATC	6 cut(s)	315, 561, 568, 967, 1000, 1005
BstMBI	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
BstMWI	GCNNNNNNNGC	3 cut(s)	854, 863, 1106
BstNI	CCWGG	2 cut(s)	594, 875
BstNSI	RCATGY	1 cut(s)	1109
BstSCI	CCNGG	3 cut(s)	592, 873, 1120
BstUI	CGCG	1 cut(s)	1072
BstV1I	GCAGC	7 cut(s)	25, 485, 500, 809, 866, 1044, 1047
BstV2I	GAAGAC	1 cut(s)	840
BstX2I	RGATCY	1 cut(s)	312
BstYI	RGATCY	1 cut(s)	312
Bsu15I	ATCGAT	1 cut(s)	432
BsuI	GTATCC	2 cut(s)	600, 769
BsuRI	GGCC	2 cut(s)	508, 607
BsuTUI	ATCGAT	1 cut(s)	432
BtgI	CCRYGG	2 cut(s)	287, 1070
BtsCI	GGATG	3 cut(s)	252, 509, 523
BtsIMutI	CAGTG	1 cut(s)	857
CfoI	GCGC	2 cut(s)	156, 462
Cfr10I	RCCGGY	1 cut(s)	619
Cfr13I	GGNCC	3 cut(s)	12, 64, 690
Cfr42I	CCGCGG	1 cut(s)	1073
ClaI	ATCGAT	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	142, 399
CspCI	CAANNNNNGTGG	2 cut(s)	654, 689
CviAII	CATG	9 cut(s)	288, 380, 391, 425, 443, 514, 1024, 1061, 1106
CviQI	GTAC	2 cut(s)	142, 399
DdeI	CTNAG	5 cut(s)	95, 582, 702, 879, 1152
DpnI	GATC	6 cut(s)	314, 560, 567, 966, 999, 1004
DpnII	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
DraIII	CACNNNGTG	1 cut(s)	88
Eam1104I	CTCTTC	1 cut(s)	34
EarI	CTCTTC	1 cut(s)	34
Eco130I	CCWWGG	2 cut(s)	287, 316
Eco47I	GGWCC	3 cut(s)	12, 64, 690
Eco57I	CTGAAG	1 cut(s)	734
Eco88I	CYCGRG	1 cut(s)	771
EcoNI	CCTNNNNNAGG	1 cut(s)	878
EcoRII	CCWGG	2 cut(s)	592, 873
EcoT14I	CCWWGG	2 cut(s)	287, 316
ErhI	CCWWGG	2 cut(s)	287, 316
FaeI	CATG	9 cut(s)	291, 383, 394, 428, 446, 517, 1027, 1064, 1109
FaqI	GGGAC	4 cut(s)	50, 652, 676, 798
FatI	CATG	9 cut(s)	287, 379, 390, 424, 442, 513, 1023, 1060, 1105
FauI	CCCGC	1 cut(s)	1077
FbaI	TGATCA	1 cut(s)	964
FblI	GTMKAC	1 cut(s)	892
Fnu4HI	GCNGC	7 cut(s)	39, 474, 489, 798, 855, 1033, 1036
FokI	GGATG	3 cut(s)	259, 516, 530
Fsp4HI	GCNGC	7 cut(s)	39, 474, 489, 798, 855, 1033, 1036
FspBI	CTAG	1 cut(s)	669
FspI	TGCGCA	2 cut(s)	155, 461
GlaI	GCGC	2 cut(s)	155, 461
GluI	GCNGC	7 cut(s)	39, 474, 489, 798, 855, 1033, 1036
GsuI	CTGGAG	1 cut(s)	881
HaeIII	GGCC	2 cut(s)	508, 607
HapII	CCGG	2 cut(s)	620, 1122
HhaI	GCGC	2 cut(s)	156, 462
Hin1II	CATG	9 cut(s)	291, 383, 394, 428, 446, 517, 1027, 1064, 1109
Hin6I	GCGC	2 cut(s)	154, 460
HinP1I	GCGC	2 cut(s)	154, 460
HincII	GTYRAC	1 cut(s)	893
HindII	GTYRAC	1 cut(s)	893
HinfI	GANTC	7 cut(s)	239, 329, 527, 650, 917, 1015, 1145
HpaII	CCGG	2 cut(s)	620, 1122
HphI	GGTGA	4 cut(s)	276, 419, 1058, 1154
Hpy166II	GTNNAC	4 cut(s)	144, 665, 893, 1066
Hpy188I	TCNGA	8 cut(s)	96, 268, 386, 714, 832, 961, 976, 1002
Hpy188III	TCNNGA	4 cut(s)	20, 501, 554, 773
Hpy8I	GTNNAC	4 cut(s)	144, 665, 893, 1066
HpyAV	CCTTC	4 cut(s)	184, 463, 742, 775
HpyCH4III	ACNGT	2 cut(s)	643, 742
HpyCH4IV	ACGT	2 cut(s)	787, 925
HpyCH4V	TGCA	3 cut(s)	413, 419, 943
HpyF10VI	GCNNNNNNNGC	3 cut(s)	854, 863, 1106
HpyF3I	CTNAG	5 cut(s)	95, 582, 702, 879, 1152
HpySE526I	ACGT	2 cut(s)	787, 925
Hsp92II	CATG	9 cut(s)	291, 383, 394, 428, 446, 517, 1027, 1064, 1109
HspAI	GCGC	2 cut(s)	154, 460
Ksp22I	TGATCA	1 cut(s)	964
KspI	CCGCGG	1 cut(s)	1073
Kzo9I	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
LmnI	GCTCC	1 cut(s)	687
Lsp1109I	GCAGC	7 cut(s)	25, 485, 500, 809, 866, 1044, 1047
LweI	GCATC	2 cut(s)	400, 669
MaeI	CTAG	1 cut(s)	669
MaeII	ACGT	2 cut(s)	787, 925
MalI	GATC	6 cut(s)	314, 560, 567, 966, 999, 1004
MboI	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
MflI	RGATCY	1 cut(s)	312
MluCI	AATT	9 cut(s)	124, 165, 493, 533, 599, 614, 633, 721, 1174
MlyI	GAGTC	2 cut(s)	248, 911
MmeI	TCCRAC	1 cut(s)	409
MseI	TTAA	3 cut(s)	168, 575, 816
MslI	CAYNNNNRTG	1 cut(s)	289
MspA1I	CMGCKG	3 cut(s)	701, 1045, 1072
MspI	CCGG	2 cut(s)	620, 1122
MspR9I	CCNGG	3 cut(s)	594, 875, 1122
Mva1269I	GAATGC	1 cut(s)	940
MvaI	CCWGG	2 cut(s)	594, 875
MvnI	CGCG	1 cut(s)	1072
MwoI	GCNNNNNNNGC	3 cut(s)	854, 863, 1106
NciI	CCSGG	1 cut(s)	1122
NcoI	CCATGG	1 cut(s)	287
NdeII	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
NlaIII	CATG	9 cut(s)	291, 383, 394, 428, 446, 517, 1027, 1064, 1109
NlaIV	GGNNCC	3 cut(s)	66, 692, 733
NmeAIII	GCCGAG	1 cut(s)	1114
NsbI	TGCGCA	2 cut(s)	155, 461
NspI	RCATGY	1 cut(s)	1109
OliI	CACNNNNGTG	1 cut(s)	289
PctI	GAATGC	1 cut(s)	940
PfeI	GAWTC	5 cut(s)	329, 527, 650, 1015, 1145
PkrI	GCNGC	7 cut(s)	40, 475, 490, 799, 856, 1034, 1037
PleI	GAGTC	2 cut(s)	247, 911
PpsI	GAGTC	2 cut(s)	247, 911
Ppu21I	YACGTR	1 cut(s)	926
Psp6I	CCWGG	2 cut(s)	592, 873
PspGI	CCWGG	2 cut(s)	592, 873
PspN4I	GGNNCC	3 cut(s)	66, 692, 733
PspPI	GGNCC	3 cut(s)	12, 64, 690
PsuI	RGATCY	1 cut(s)	312
PvuII	CAGCTG	1 cut(s)	701
RsaI	GTAC	2 cut(s)	143, 400
RsaNI	GTAC	2 cut(s)	142, 399
RseI	CAYNNNNRTG	1 cut(s)	289
SacII	CCGCGG	1 cut(s)	1073
SalI	GTCGAC	1 cut(s)	891
SaqAI	TTAA	3 cut(s)	168, 575, 816
SatI	GCNGC	7 cut(s)	39, 474, 489, 798, 855, 1033, 1036
Sau3AI	GATC	6 cut(s)	312, 558, 565, 964, 997, 1002
Sau96I	GGNCC	3 cut(s)	12, 64, 690
SchI	GAGTC	2 cut(s)	248, 911
ScrFI	CCNGG	3 cut(s)	594, 875, 1122
SfaNI	GCATC	2 cut(s)	400, 669
Sfr303I	CCGCGG	1 cut(s)	1073
SgrBI	CCGCGG	1 cut(s)	1073
SinI	GGWCC	3 cut(s)	12, 64, 690
SmiMI	CAYNNNNRTG	1 cut(s)	289
SmlI	CTYRAG	1 cut(s)	18
SmoI	CTYRAG	1 cut(s)	18
Sse9I	AATT	9 cut(s)	124, 165, 493, 533, 599, 614, 633, 721, 1174
SsiI	CCGC	3 cut(s)	1045, 1070, 1072
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	3 cut(s)	592, 873, 1120
StyI	CCWWGG	2 cut(s)	287, 316
TaaI	ACNGT	2 cut(s)	643, 742
TaiI	ACGT	2 cut(s)	790, 928
TaqI	TCGA	4 cut(s)	432, 892, 909, 996
TaqII	GACCGA	2 cut(s)	52, 367
TasI	AATT	9 cut(s)	124, 165, 493, 533, 599, 614, 633, 721, 1174
TatI	WGTACW	1 cut(s)	141
TfiI	GAWTC	5 cut(s)	329, 527, 650, 1015, 1145
Tru1I	TTAA	3 cut(s)	168, 575, 816
Tru9I	TTAA	3 cut(s)	168, 575, 816
TscAI	CASTG	1 cut(s)	864
TseI	GCWGC	7 cut(s)	38, 473, 488, 797, 854, 1032, 1035
TspDTI	ATGAA	5 cut(s)	63, 166, 441, 502, 540
TspRI	CASTG	1 cut(s)	864
VpaK11BI	GGWCC	3 cut(s)	12, 64, 690
XagI	CCTNNNNNAGG	1 cut(s)	878
XapI	RAATTY	2 cut(s)	493, 599
XceI	RCATGY	1 cut(s)	1109
XmiI	GTMKAC	1 cut(s)	892
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.