Rroxscaffold_1G00041550

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0016792
Physical Location & Seq
Forward (+)
59430660 .. 59431010
351 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00041550.1

Sequence Viewer

Length: 351 bp
ATGGCAGCATTTGAGGCTCTGTGTCTAGCTAAGGAACTGGGTTGGCCACGAGTTTGCTTTGAGGGTGACTCCGTACGTGTTGTGAATGCTCTGCAAACTTCTACTACTTCTGATGAGTCCGACACTCCTTCTCCTCCTCCTCATTTGGTCAGATCATTAGTGCGATTCAATATATGTCACGCTGCTTTCCAGCAGACTACATTTTCTCTTGTTCACCAGAAGGCTAATGTTGTTGCTGAGAACCTTGCTACACATGCTTTATCAAACCCCGAAGAGAACCATTGGATTGCTAAGCCCCCTACTTTTATCGACTCCTCTTTGGCTATTGAAAAATATGCTTCTTCAACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04020 ko04022 ko04270 ko04371 ko04510 ko04611 ko04810 ko04921 ko04971 map04020 map04022 map04270 map04371 map04510 map04611 map04810 map04921 map04971
Pfam Domains
Protein Families
DUF4283 Exo_endo_phos_2 RVT_1 RVT_3

Protein Analysis

116

Amino Acids

12.71

Weight (kDa)

5.64

Isoelectric Point (pI)

56.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 2 - 86 1.1e-06 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 44
AfaI GTAC 1 cut(s) 75
AflIII ACRYGT 1 cut(s) 76
AgsI TTSAA 3 cut(s) 169, 329, 345
AluBI AGCT 1 cut(s) 29
AluI AGCT 1 cut(s) 29
AoxI GGCC 1 cut(s) 44
ApeKI GCWGC 2 cut(s) 5, 182
AsuHPI GGTGA 2 cut(s) 77, 206
BalI TGGCCA 1 cut(s) 46
BauI CACGAG 1 cut(s) 48
BbvI GCAGC 2 cut(s) 17, 169
BfaI CTAG 1 cut(s) 26
BisI GCNGC 2 cut(s) 6, 183
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 2 cut(s) 7, 184
BmrI ACTGGG 1 cut(s) 47
BmuI ACTGGG 1 cut(s) 47
BplI GAGNNNNNCTC 2 cut(s) 53, 85
Bpu10I CCTNAGC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 291
BsaAI YACGTR 1 cut(s) 77
BsaXI ACNNNNNCTCC 2 cut(s) 115, 145
Bse1I ACTGG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 42
BseRI GAGGAG 4 cut(s) 123, 126, 129, 304
BseXI GCAGC 2 cut(s) 17, 169
BshFI GGCC 1 cut(s) 46
BsiWI CGTACG 1 cut(s) 73
BsmI GAATGC 1 cut(s) 91
BsnI GGCC 1 cut(s) 46
Bsp143I GATC 1 cut(s) 152
Bsp1720I GCTNAGC 1 cut(s) 291
BspANI GGCC 1 cut(s) 46
BspCNI CTCAG 1 cut(s) 229
BsrI ACTGG 1 cut(s) 42
BssMI GATC 1 cut(s) 152
BssSI CACGAG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 48
Bst6I CTCTTC 1 cut(s) 267
BstBAI YACGTR 1 cut(s) 77
BstDEI CTNAG 3 cut(s) 30, 237, 291
BstKTI GATC 1 cut(s) 155
BstMBI GATC 1 cut(s) 152
BstMWI GCNNNNNNNGC 2 cut(s) 14, 254
BstNSI RCATGY 1 cut(s) 257
BstV1I GCAGC 2 cut(s) 17, 169
BsuRI GGCC 1 cut(s) 46
Csp6I GTAC 1 cut(s) 74
CviAII CATG 1 cut(s) 254
CviJI RGCY 6 cut(s) 17, 29, 46, 224, 295, 323
CviKI_1 RGCY 6 cut(s) 17, 29, 46, 224, 295, 323
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 3 cut(s) 30, 237, 291
DpnI GATC 1 cut(s) 154
DpnII GATC 1 cut(s) 152
EaeI YGGCCR 1 cut(s) 44
Eam1104I CTCTTC 1 cut(s) 267
EarI CTCTTC 1 cut(s) 267
FaeI CATG 1 cut(s) 257
FaiI YATR 5 cut(s) 173, 175, 255, 336, 349
FatI CATG 1 cut(s) 253
Fnu4HI GCNGC 2 cut(s) 6, 183
Fsp4HI GCNGC 2 cut(s) 6, 183
FspBI CTAG 1 cut(s) 26
GluI GCNGC 2 cut(s) 6, 183
HaeIII GGCC 1 cut(s) 46
Hin1II CATG 1 cut(s) 257
HinfI GANTC 4 cut(s) 68, 116, 165, 311
HphI GGTGA 2 cut(s) 77, 206
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 3 cut(s) 112, 121, 152
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 2 cut(s) 138, 214
HpyCH4IV ACGT 1 cut(s) 76
HpyCH4V TGCA 1 cut(s) 94
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 254
HpyF3I CTNAG 3 cut(s) 30, 237, 291
HpySE526I ACGT 1 cut(s) 76
Hsp92II CATG 1 cut(s) 257
Kzo9I GATC 1 cut(s) 152
LpnPI CCDG 3 cut(s) 23, 203, 230
Lsp1109I GCAGC 2 cut(s) 17, 169
MaeI CTAG 1 cut(s) 26
MaeII ACGT 1 cut(s) 76
MaeIII GTNAC 2 cut(s) 65, 176
MalI GATC 1 cut(s) 154
MboI GATC 1 cut(s) 152
MboII GAAGA 2 cut(s) 284, 333
MlsI TGGCCA 1 cut(s) 46
MluNI TGGCCA 1 cut(s) 46
MlyI GAGTC 3 cut(s) 62, 125, 305
MmeI TCCRAC 1 cut(s) 144
MnlI CCTC 6 cut(s) 7, 55, 144, 147, 150, 325
Mox20I TGGCCA 1 cut(s) 46
MscI TGGCCA 1 cut(s) 46
Msp20I TGGCCA 1 cut(s) 46
Mva1269I GAATGC 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 14, 254
NdeII GATC 1 cut(s) 152
NlaIII CATG 1 cut(s) 257
NmuCI GTSAC 2 cut(s) 65, 176
NspI RCATGY 1 cut(s) 257
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 165
Pfl23II CGTACG 1 cut(s) 73
PkrI GCNGC 2 cut(s) 7, 184
PleI GAGTC 3 cut(s) 62, 124, 305
PpsI GAGTC 3 cut(s) 62, 124, 305
Ppu21I YACGTR 1 cut(s) 77
PspLI CGTACG 1 cut(s) 73
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SatI GCNGC 2 cut(s) 6, 183
Sau3AI GATC 1 cut(s) 152
SchI GAGTC 3 cut(s) 62, 125, 305
SetI ASST 3 cut(s) 31, 79, 246
SspMI CTAG 1 cut(s) 26
TaiI ACGT 1 cut(s) 79
TaqI TCGA 1 cut(s) 309
TfiI GAWTC 1 cut(s) 165
TseFI GTSAC 2 cut(s) 65, 176
TseI GCWGC 2 cut(s) 5, 182
Tsp45I GTSAC 2 cut(s) 65, 176
TspGWI ACGGA 1 cut(s) 61
XceI RCATGY 1 cut(s) 257
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.