Rh5AG267800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0016792
Physical Location & Seq
Reverse (-)
35318621 .. 35324334
5714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG267800.1

Sequence Viewer

Length: 999 bp
ATGAAAGAAGAGAAAAGAAAAAGTGATTTCAGAGTGGTGGGTGGTTTGGGGATAGCGCTGAAACTGAGAGGAGTGAAGGAGGAAGTAATTGGGGGATGGAAAATGTTTAAAGGGACTGATTTTGGAGGAGGAGGCGGATTGGGTATAGTGGTGGAGGATGACCGAAATCAACAGTGGATAAAGATGAAGAGAAAAATTAAGACTTTAGACACACAAGTCATTACTGGTTCAGACCTGTACTACTATACTAGGAATGAATCTCGACTTATCAAACGCATCGTTAAAGAGATCGCAGATCAAGTATCTAACCCCAAGTTGTCCCTGGATGAAATCAGGGATCCACTTGTGGTAACAGCTATAGATCTTATTCCAAGACCACCACCTAGTTTGCTGGAAGTCACTTGGTCCCGTCCAGCTGAGGGTTATCTTAAGATAAATTATGATGGTGCCTATACTGTGAGGAAGGGAGGTTTAGGTGTGGTTGCTCGGGATACGAAGGGACGTTTTGTGGCAGCAAAGTGCAGGTTGGTTAATGTTGAATCAGAGGGCGATGTGGTGGCAATGGCAGCATTTGAGGCTCTGTGTCTAGCTAAGGAACTGGGTTGGCCACAAGTTTGCTTTGAGGGTGACTCCGTACGTGTTGTGAATGCTCTGCAAACTTCTACTGCTTCTGATGAGTCCGACACTTCCTCCTCCTCCTCCTCATTTGGTCAGATCATTAGTGCGATTCAATATATGTCACGCAGCTTCCAGCAGACTACATTTTCTCTTGTTCACCAGAAGGCTAATGTTGTTGCTGAGAACCTTGCTACACATGCTTTATCAAACCCCGCAGAGAAACATTGGATTGCTAAGCCCGCAGAGAAACTTTTATCGACTCCTCTTTGGCTATTGAAAAATATGCTTCTTCTACATAGGCAAATGACCATCAACAAAATTGTTTCCTTCATAACTAATATTAAAAATGTTAGCTCAGTGGTTAGAGCACTCACTACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

332

Amino Acids

36.73

Weight (kDa)

9.41

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 146 - 273 4.5e-15 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 215
Acc36I ACCTGC 1 cut(s) 513
AccB1I GGYRCC 1 cut(s) 446
AciI CCGC 3 cut(s) 135, 831, 858
AclWI GGATC 2 cut(s) 332, 345
AcoI YGGCCR 1 cut(s) 605
AfaI GTAC 2 cut(s) 239, 636
AfeI AGCGCT 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 419
AflII CTTAAG 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 637
AgsI TTSAA 3 cut(s) 539, 731, 895
AjnI CCWGG 1 cut(s) 321
AluBI AGCT 5 cut(s) 356, 416, 590, 747, 972
AluI AGCT 5 cut(s) 356, 416, 590, 747, 972
Alw21I GWGCWC 1 cut(s) 988
AlwI GGATC 2 cut(s) 332, 345
Ama87I CYCGRG 1 cut(s) 486
Aor51HI AGCGCT 1 cut(s) 57
AoxI GGCC 1 cut(s) 605
ApeKI GCWGC 3 cut(s) 512, 566, 744
AspLEI GCGC 1 cut(s) 58
AspS9I GGNCC 1 cut(s) 405
AsuHPI GGTGA 2 cut(s) 638, 767
AvaI CYCGRG 1 cut(s) 486
AvaII GGWCC 1 cut(s) 405
BalI TGGCCA 1 cut(s) 607
BamHI GGATCC 1 cut(s) 337
BanI GGYRCC 1 cut(s) 446
Bbv12I GWGCWC 1 cut(s) 988
BbvCI CCTCAGC 1 cut(s) 417
BbvI GCAGC 3 cut(s) 524, 578, 756
BccI CCATC 3 cut(s) 90, 437, 935
BciT130I CCWGG 1 cut(s) 323
BciVI GTATCC 1 cut(s) 484
BfaI CTAG 3 cut(s) 249, 384, 587
BfmI CTRYAG 1 cut(s) 357
BfoI RGCGCY 1 cut(s) 59
BfrI CTTAAG 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 513
BfuI GTATCC 1 cut(s) 484
BglII AGATCT 1 cut(s) 361
BisI GCNGC 3 cut(s) 513, 567, 745
BlpI GCTNAGC 1 cut(s) 852
BlsI GCNGC 3 cut(s) 514, 568, 746
Bme1390I CCNGG 1 cut(s) 323
Bme18I GGWCC 1 cut(s) 405
BmeT110I CYCGRG 1 cut(s) 486
BmgT120I GGNCC 1 cut(s) 405
BmiI GGNNCC 3 cut(s) 339, 407, 448
BmrFI CCNGG 1 cut(s) 323
BmrI ACTGGG 1 cut(s) 608
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 608
BplI GAGNNNNNCTC 2 cut(s) 614, 646
Bpu10I CCTNAGC 2 cut(s) 417, 591
Bpu1102I GCTNAGC 1 cut(s) 852
BsaAI YACGTR 1 cut(s) 638
BsaJI CCNNGG 1 cut(s) 321
BsaXI ACNNNNNCTCC 2 cut(s) 674, 704
Bsc4I CCNNNNNNNGG 1 cut(s) 419
Bse1I ACTGG 2 cut(s) 229, 603
Bse3DI GCAATG 1 cut(s) 567
BseBI CCWGG 1 cut(s) 323
BseDI CCNNGG 1 cut(s) 321
BseGI GGATG 3 cut(s) 101, 163, 331
BseLI CCNNNNNNNGG 1 cut(s) 419
BseMI GCAATG 1 cut(s) 567
BseMII CTCAG 4 cut(s) 56, 408, 789, 987
BseNI ACTGG 2 cut(s) 229, 603
BseRI GAGGAG 8 cut(s) 84, 141, 144, 682, 685, 688, 691, 870
BseXI GCAGC 3 cut(s) 524, 578, 756
BsgI GTGCAG 1 cut(s) 541
BshFI GGCC 1 cut(s) 607
BshNI GGYRCC 1 cut(s) 446
BsiHKAI GWGCWC 1 cut(s) 988
BsiHKCI CYCGRG 1 cut(s) 486
BsiWI CGTACG 1 cut(s) 634
BslFI GGGAC 4 cut(s) 127, 304, 391, 513
BslI CCNNNNNNNGG 1 cut(s) 419
BsmFI GGGAC 4 cut(s) 127, 304, 391, 513
BsmI GAATGC 1 cut(s) 652
BsnI GGCC 1 cut(s) 607
BsoBI CYCGRG 1 cut(s) 486
Bsp1286I GDGCHC 1 cut(s) 988
Bsp143I GATC 5 cut(s) 288, 295, 337, 361, 714
Bsp1720I GCTNAGC 1 cut(s) 852
BspACI CCGC 3 cut(s) 135, 831, 858
BspANI GGCC 1 cut(s) 607
BspCNI CTCAG 4 cut(s) 57, 409, 790, 986
BspLI GGNNCC 3 cut(s) 339, 407, 448
BspMI ACCTGC 1 cut(s) 513
BspPI GGATC 2 cut(s) 332, 345
BspT107I GGYRCC 1 cut(s) 446
BspTI CTTAAG 1 cut(s) 428
BsrDI GCAATG 1 cut(s) 567
BsrI ACTGG 2 cut(s) 229, 603
BssECI CCNNGG 1 cut(s) 321
BssMI GATC 5 cut(s) 288, 295, 337, 361, 714
Bst2UI CCWGG 1 cut(s) 323
Bst4CI ACNGT 2 cut(s) 174, 457
Bst6I CTCTTC 2 cut(s) 3, 182
BstAFI CTTAAG 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 1 cut(s) 858
BstDEI CTNAG 6 cut(s) 65, 417, 591, 798, 852, 973
BstF5I GGATG 3 cut(s) 101, 163, 331
BstH2I RGCGCY 1 cut(s) 59
BstHHI GCGC 1 cut(s) 58
BstKTI GATC 5 cut(s) 291, 298, 340, 364, 717
BstMBI GATC 5 cut(s) 288, 295, 337, 361, 714
BstMWI GCNNNNNNNGC 4 cut(s) 566, 575, 815, 857
BstNI CCWGG 1 cut(s) 323
BstNSI RCATGY 1 cut(s) 818
BstSCI CCNGG 1 cut(s) 321
BstSFI CTRYAG 1 cut(s) 357
BstV1I GCAGC 3 cut(s) 524, 578, 756
BstX2I RGATCY 2 cut(s) 337, 361
BstYI RGATCY 2 cut(s) 337, 361
BsuI GTATCC 1 cut(s) 484
BsuRI GGCC 1 cut(s) 607
BtgZI GCGATG 1 cut(s) 564
BtsCI GGATG 3 cut(s) 101, 163, 331
BtsIMutI CAGTG 2 cut(s) 179, 981
BveI ACCTGC 1 cut(s) 513
Cac8I GCNNGC 1 cut(s) 858
CfoI GCGC 1 cut(s) 58
Cfr13I GGNCC 1 cut(s) 405
Csp6I GTAC 2 cut(s) 238, 635
CspCI CAANNNNNGTGG 2 cut(s) 369, 404
CviAII CATG 1 cut(s) 815
CviQI GTAC 2 cut(s) 238, 635
DdeI CTNAG 6 cut(s) 65, 417, 591, 798, 852, 973
DpnI GATC 5 cut(s) 290, 297, 339, 363, 716
DpnII GATC 5 cut(s) 288, 295, 337, 361, 714
DraI TTTAAA 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 215
DseDI GACNNNNNNGTC 1 cut(s) 215
EaeI YGGCCR 1 cut(s) 605
Eam1104I CTCTTC 2 cut(s) 3, 182
EarI CTCTTC 2 cut(s) 3, 182
EciI GGCGGA 1 cut(s) 150
Eco47I GGWCC 1 cut(s) 405
Eco47III AGCGCT 1 cut(s) 57
Eco88I CYCGRG 1 cut(s) 486
EcoRII CCWGG 1 cut(s) 321
FaeI CATG 1 cut(s) 818
FaqI GGGAC 4 cut(s) 127, 304, 391, 513
FatI CATG 1 cut(s) 814
FauI CCCGC 2 cut(s) 838, 865
Fnu4HI GCNGC 3 cut(s) 513, 567, 745
FokI GGATG 3 cut(s) 108, 170, 338
Fsp4HI GCNGC 3 cut(s) 513, 567, 745
FspBI CTAG 3 cut(s) 249, 384, 587
GlaI GCGC 1 cut(s) 57
GluI GCNGC 3 cut(s) 513, 567, 745
HaeII RGCGCY 1 cut(s) 59
HaeIII GGCC 1 cut(s) 607
HhaI GCGC 1 cut(s) 58
Hin1II CATG 1 cut(s) 818
Hin6I GCGC 1 cut(s) 56
HinP1I GCGC 1 cut(s) 56
HinfI GANTC 6 cut(s) 257, 539, 629, 677, 727, 877
HphI GGTGA 2 cut(s) 638, 767
Hpy166II GTNNAC 1 cut(s) 775
Hpy188I TCNGA 6 cut(s) 32, 232, 544, 673, 682, 714
Hpy188III TCNNGA 2 cut(s) 261, 488
Hpy8I GTNNAC 1 cut(s) 775
HpyAV CCTTC 5 cut(s) 70, 457, 490, 775, 955
HpyCH4III ACNGT 2 cut(s) 174, 457
HpyCH4IV ACGT 2 cut(s) 502, 637
HpyCH4V TGCA 2 cut(s) 522, 655
HpyF10VI GCNNNNNNNGC 4 cut(s) 566, 575, 815, 857
HpyF3I CTNAG 6 cut(s) 65, 417, 591, 798, 852, 973
HpySE526I ACGT 2 cut(s) 502, 637
Hsp92II CATG 1 cut(s) 818
HspAI GCGC 1 cut(s) 56
Kzo9I GATC 5 cut(s) 288, 295, 337, 361, 714
Lsp1109I GCAGC 3 cut(s) 524, 578, 756
LweI GCATC 1 cut(s) 285
MaeI CTAG 3 cut(s) 249, 384, 587
MaeII ACGT 2 cut(s) 502, 637
MaeIII GTNAC 4 cut(s) 349, 397, 626, 738
MalI GATC 5 cut(s) 290, 297, 339, 363, 716
MboI GATC 5 cut(s) 288, 295, 337, 361, 714
MboII GAAGA 3 cut(s) 20, 199, 899
MflI RGATCY 2 cut(s) 337, 361
MhlI GDGCHC 1 cut(s) 988
MlsI TGGCCA 1 cut(s) 607
MluCI AATT 4 cut(s) 87, 195, 436, 936
MluNI TGGCCA 1 cut(s) 607
MlyI GAGTC 3 cut(s) 623, 686, 871
MmeI TCCRAC 1 cut(s) 705
Mox20I TGGCCA 1 cut(s) 607
MscI TGGCCA 1 cut(s) 607
MseI TTAA 6 cut(s) 108, 198, 282, 429, 531, 960
Msp20I TGGCCA 1 cut(s) 607
MspA1I CMGCKG 1 cut(s) 416
MspCI CTTAAG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 323
Mva1269I GAATGC 1 cut(s) 652
MvaI CCWGG 1 cut(s) 323
MwoI GCNNNNNNNGC 4 cut(s) 566, 575, 815, 857
NdeII GATC 5 cut(s) 288, 295, 337, 361, 714
NlaIII CATG 1 cut(s) 818
NlaIV GGNNCC 3 cut(s) 339, 407, 448
NmuCI GTSAC 3 cut(s) 397, 626, 738
NspI RCATGY 1 cut(s) 818
PctI GAATGC 1 cut(s) 652
PfeI GAWTC 3 cut(s) 257, 539, 727
Pfl23II CGTACG 1 cut(s) 634
PkrI GCNGC 3 cut(s) 514, 568, 746
PleI GAGTC 3 cut(s) 623, 685, 871
PpsI GAGTC 3 cut(s) 623, 685, 871
Ppu21I YACGTR 1 cut(s) 638
Psp6I CCWGG 1 cut(s) 321
PspGI CCWGG 1 cut(s) 321
PspLI CGTACG 1 cut(s) 634
PspN4I GGNNCC 3 cut(s) 339, 407, 448
PspPI GGNCC 1 cut(s) 405
PsuI RGATCY 2 cut(s) 337, 361
PvuII CAGCTG 1 cut(s) 416
RsaI GTAC 2 cut(s) 239, 636
RsaNI GTAC 2 cut(s) 238, 635
SaqAI TTAA 6 cut(s) 108, 198, 282, 429, 531, 960
SatI GCNGC 3 cut(s) 513, 567, 745
Sau3AI GATC 5 cut(s) 288, 295, 337, 361, 714
Sau96I GGNCC 1 cut(s) 405
SchI GAGTC 3 cut(s) 623, 686, 871
ScrFI CCNGG 1 cut(s) 323
SduI GDGCHC 1 cut(s) 988
SfaNI GCATC 1 cut(s) 285
SfcI CTRYAG 1 cut(s) 357
SinI GGWCC 1 cut(s) 405
SmlI CTYRAG 1 cut(s) 428
SmoI CTYRAG 1 cut(s) 428
Sse9I AATT 4 cut(s) 87, 195, 436, 936
SsiI CCGC 3 cut(s) 135, 831, 858
SspI AATATT 1 cut(s) 958
SspMI CTAG 3 cut(s) 249, 384, 587
StyD4I CCNGG 1 cut(s) 321
TaaI ACNGT 2 cut(s) 174, 457
TaiI ACGT 2 cut(s) 505, 640
TaqI TCGA 2 cut(s) 262, 875
TaqII GACCGA 1 cut(s) 177
TasI AATT 4 cut(s) 87, 195, 436, 936
TatI WGTACW 1 cut(s) 237
TfiI GAWTC 3 cut(s) 257, 539, 727
Tru1I TTAA 6 cut(s) 108, 198, 282, 429, 531, 960
Tru9I TTAA 6 cut(s) 108, 198, 282, 429, 531, 960
TscAI CASTG 2 cut(s) 179, 981
TseFI GTSAC 3 cut(s) 397, 626, 738
TseI GCWGC 3 cut(s) 512, 566, 744
Tsp45I GTSAC 3 cut(s) 397, 626, 738
TspDTI ATGAA 5 cut(s) 17, 200, 270, 342, 937
TspGWI ACGGA 1 cut(s) 622
TspRI CASTG 2 cut(s) 179, 981
Vha464I CTTAAG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 405
XceI RCATGY 1 cut(s) 818
XcmI CCANNNNNNNNNTGG 1 cut(s) 319
XspI CTAG 3 cut(s) 249, 384, 587
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.