Rh5DG279800

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0016792
Physical Location & Seq
Reverse (-)
34262302 .. 34264741
2440 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG279800.1

Sequence Viewer

Length: 747 bp
ATGATTGTGCGTAGATGGGGTGCAGCTCTTTCTGAAGCGGCGAATTTGTCCGGGTGGCCCTTGAAGGATCAGAATGAATCTCGACTTATCAAACGCATCGTTAAAGAGATCGCAGATCAAGTATCTAACCCCAAGTTGTCCCTGGATGAAATCAGGGATCCACTTGTGGTGACAGCTATAGATCTTATTCCAAGACCACCACCTAGTTTGCTGCAAGTCACTTGGTCCCGTCCAGCTGAGGGTTATCTTAAGATAAATTATGATGGCGCCTATACTGTGAGGAAGGGAGGTTTAGGTGTGGTTGCTCGGGATACGAAGGGACGTTTTGTGGCAGCAAAGTGCAGGTTGGTTAATGTTGAATCAGAGGGCGATGTGGTGGCAATGGCAGCATTTGAGGCTCTGTGTCTAGCTAAGGAACTGGGTTGGCCACAAGTTTGCTTTGAGGGTGACTCCGTACGTGTTGTGAATGCTCTGCAAACTTCTACTGCTTCTGATGAGTCCGACACTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCATTTGGTCAGATCATTAGTGCGATTCAATATATGTCACGCAGCTTTCAGCAGACTACATTTTCTCTTGTTCACCAGAAGGCTAATGTTGTTGCTGAGAACCTTGCTACACATGCTTTATCAAACCCCGCAGAGAAACATTGGATTGCTAAGCCCCCTACTTTTATCGACTCCTCTTTGGCTATTGAAAAATATGCTTCTTCTACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

248

Amino Acids

26.91

Weight (kDa)

6.84

Isoelectric Point (pI)

47.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 86 - 218 1.9e-13 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 333
AccB1I GGYRCC 1 cut(s) 266
AciI CCGC 2 cut(s) 38, 666
AclWI GGATC 3 cut(s) 75, 152, 165
AcoI YGGCCR 1 cut(s) 425
AcsI RAATTY 1 cut(s) 43
AcuI CTGAAG 1 cut(s) 54
AcyI GRCGYC 1 cut(s) 267
AfaI GTAC 1 cut(s) 456
AfiI CCNNNNNNNGG 1 cut(s) 239
AflII CTTAAG 1 cut(s) 248
AflIII ACRYGT 1 cut(s) 457
AgsI TTSAA 4 cut(s) 64, 359, 566, 725
AjnI CCWGG 1 cut(s) 141
AluBI AGCT 5 cut(s) 26, 176, 236, 410, 582
AluI AGCT 5 cut(s) 26, 176, 236, 410, 582
AlwI GGATC 3 cut(s) 75, 152, 165
Ama87I CYCGRG 1 cut(s) 306
AoxI GGCC 2 cut(s) 56, 425
ApeKI GCWGC 5 cut(s) 23, 211, 332, 386, 579
ApoI RAATTY 1 cut(s) 43
AspLEI GCGC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 57, 225
AsuC2I CCSGG 1 cut(s) 52
AsuHPI GGTGA 3 cut(s) 181, 458, 602
AvaI CYCGRG 1 cut(s) 306
AvaII GGWCC 1 cut(s) 225
BalI TGGCCA 1 cut(s) 427
BamHI GGATCC 1 cut(s) 157
BanI GGYRCC 1 cut(s) 266
BbvCI CCTCAGC 1 cut(s) 237
BbvI GCAGC 5 cut(s) 35, 198, 344, 398, 591
BccI CCATC 2 cut(s) 9, 257
BciT130I CCWGG 1 cut(s) 143
BciVI GTATCC 1 cut(s) 304
BcnI CCSGG 1 cut(s) 52
BfaI CTAG 2 cut(s) 204, 407
BfmI CTRYAG 1 cut(s) 177
BfoI RGCGCY 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 248
BfuAI ACCTGC 1 cut(s) 333
BfuI GTATCC 1 cut(s) 304
BglII AGATCT 1 cut(s) 181
BisI GCNGC 6 cut(s) 24, 39, 212, 333, 387, 580
BlpI GCTNAGC 1 cut(s) 687
BlsI GCNGC 6 cut(s) 25, 40, 213, 334, 388, 581
Bme1390I CCNGG 2 cut(s) 52, 143
Bme18I GGWCC 1 cut(s) 225
BmeT110I CYCGRG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 57, 225
BmiI GGNNCC 3 cut(s) 159, 227, 268
BmrFI CCNGG 2 cut(s) 52, 143
BmrI ACTGGG 1 cut(s) 428
BmsI GCATC 1 cut(s) 105
BmuI ACTGGG 1 cut(s) 428
BplI GAGNNNNNCTC 2 cut(s) 434, 466
Bpu10I CCTNAGC 2 cut(s) 237, 411
Bpu1102I GCTNAGC 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 52
BsaAI YACGTR 2 cut(s) 458, 744
BsaHI GRCGYC 1 cut(s) 267
BsaJI CCNNGG 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 494, 524
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 423
Bse3DI GCAATG 1 cut(s) 387
BseBI CCWGG 1 cut(s) 143
BseDI CCNNGG 1 cut(s) 141
BseGI GGATG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 239
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 2 cut(s) 228, 624
BseNI ACTGG 1 cut(s) 423
BseXI GCAGC 5 cut(s) 35, 198, 344, 398, 591
BsgI GTGCAG 2 cut(s) 42, 361
BshFI GGCC 2 cut(s) 58, 427
BshNI GGYRCC 1 cut(s) 266
BsiHKCI CYCGRG 1 cut(s) 306
BsiSI CCGG 1 cut(s) 51
BsiWI CGTACG 1 cut(s) 454
BslFI GGGAC 3 cut(s) 124, 211, 333
BslI CCNNNNNNNGG 1 cut(s) 239
BsmFI GGGAC 3 cut(s) 124, 211, 333
BsmI GAATGC 1 cut(s) 472
BsnI GGCC 2 cut(s) 58, 427
BsoBI CYCGRG 1 cut(s) 306
Bsp143I GATC 6 cut(s) 67, 108, 115, 157, 181, 549
Bsp1720I GCTNAGC 1 cut(s) 687
BspACI CCGC 2 cut(s) 38, 666
BspANI GGCC 2 cut(s) 58, 427
BspCNI CTCAG 2 cut(s) 229, 625
BspLI GGNNCC 3 cut(s) 159, 227, 268
BspMI ACCTGC 1 cut(s) 333
BspPI GGATC 3 cut(s) 75, 152, 165
BspT107I GGYRCC 1 cut(s) 266
BspTI CTTAAG 1 cut(s) 248
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 423
BssECI CCNNGG 1 cut(s) 141
BssMI GATC 6 cut(s) 67, 108, 115, 157, 181, 549
BssNI GRCGYC 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 143
Bst4CI ACNGT 1 cut(s) 277
BstACI GRCGYC 1 cut(s) 267
BstAFI CTTAAG 1 cut(s) 248
BstBAI YACGTR 2 cut(s) 458, 744
BstDEI CTNAG 4 cut(s) 237, 411, 633, 687
BstF5I GGATG 1 cut(s) 151
BstH2I RGCGCY 1 cut(s) 270
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 6 cut(s) 70, 111, 118, 160, 184, 552
BstMBI GATC 6 cut(s) 67, 108, 115, 157, 181, 549
BstMWI GCNNNNNNNGC 3 cut(s) 386, 395, 650
BstNI CCWGG 1 cut(s) 143
BstNSI RCATGY 1 cut(s) 653
BstSCI CCNGG 2 cut(s) 50, 141
BstSFI CTRYAG 1 cut(s) 177
BstSNI TACGTA 1 cut(s) 744
BstV1I GCAGC 5 cut(s) 35, 198, 344, 398, 591
BstX2I RGATCY 2 cut(s) 157, 181
BstYI RGATCY 2 cut(s) 157, 181
BsuI GTATCC 1 cut(s) 304
BsuRI GGCC 2 cut(s) 58, 427
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 1 cut(s) 151
BveI ACCTGC 1 cut(s) 333
CfoI GCGC 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 57, 225
Csp6I GTAC 1 cut(s) 455
CspCI CAANNNNNGTGG 2 cut(s) 189, 224
CviAII CATG 1 cut(s) 650
CviQI GTAC 1 cut(s) 455
DdeI CTNAG 4 cut(s) 237, 411, 633, 687
DinI GGCGCC 1 cut(s) 268
DpnI GATC 6 cut(s) 69, 110, 117, 159, 183, 551
DpnII GATC 6 cut(s) 67, 108, 115, 157, 181, 549
EaeI YGGCCR 1 cut(s) 425
Eco105I TACGTA 1 cut(s) 744
Eco47I GGWCC 1 cut(s) 225
Eco57I CTGAAG 1 cut(s) 54
Eco88I CYCGRG 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 141
EgeI GGCGCC 1 cut(s) 268
EheI GGCGCC 1 cut(s) 268
FaeI CATG 1 cut(s) 653
FaiI YATR 7 cut(s) 179, 261, 273, 570, 572, 651, 732
FaqI GGGAC 3 cut(s) 124, 211, 333
FatI CATG 1 cut(s) 649
FauI CCCGC 1 cut(s) 673
Fnu4HI GCNGC 6 cut(s) 24, 39, 212, 333, 387, 580
FokI GGATG 1 cut(s) 158
Fsp4HI GCNGC 6 cut(s) 24, 39, 212, 333, 387, 580
FspBI CTAG 2 cut(s) 204, 407
GlaI GCGC 1 cut(s) 268
GluI GCNGC 6 cut(s) 24, 39, 212, 333, 387, 580
HaeII RGCGCY 1 cut(s) 270
HaeIII GGCC 2 cut(s) 58, 427
HapII CCGG 1 cut(s) 51
HhaI GCGC 1 cut(s) 269
Hin1I GRCGYC 1 cut(s) 267
Hin1II CATG 1 cut(s) 653
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HinfI GANTC 6 cut(s) 77, 359, 449, 497, 562, 707
HpaII CCGG 1 cut(s) 51
HphI GGTGA 3 cut(s) 181, 458, 602
Hpy166II GTNNAC 1 cut(s) 610
Hpy188I TCNGA 6 cut(s) 34, 72, 364, 493, 502, 549
Hpy188III TCNNGA 2 cut(s) 81, 308
Hpy8I GTNNAC 1 cut(s) 610
HpyAV CCTTC 4 cut(s) 58, 277, 310, 610
HpyCH4III ACNGT 1 cut(s) 277
HpyCH4IV ACGT 3 cut(s) 322, 457, 743
HpyCH4V TGCA 4 cut(s) 23, 214, 342, 475
HpyF10VI GCNNNNNNNGC 3 cut(s) 386, 395, 650
HpyF3I CTNAG 4 cut(s) 237, 411, 633, 687
HpySE526I ACGT 3 cut(s) 322, 457, 743
Hsp92I GRCGYC 1 cut(s) 267
Hsp92II CATG 1 cut(s) 653
HspAI GCGC 1 cut(s) 267
KasI GGCGCC 1 cut(s) 266
Kzo9I GATC 6 cut(s) 67, 108, 115, 157, 181, 549
LpnPI CCDG 8 cut(s) 64, 128, 139, 155, 246, 328, 404, 626
Lsp1109I GCAGC 5 cut(s) 35, 198, 344, 398, 591
LweI GCATC 1 cut(s) 105
MaeI CTAG 2 cut(s) 204, 407
MaeII ACGT 3 cut(s) 322, 457, 743
MaeIII GTNAC 4 cut(s) 169, 217, 446, 573
MalI GATC 6 cut(s) 69, 110, 117, 159, 183, 551
MboI GATC 6 cut(s) 67, 108, 115, 157, 181, 549
MboII GAAGA 1 cut(s) 729
MflI RGATCY 2 cut(s) 157, 181
MlsI TGGCCA 1 cut(s) 427
MluCI AATT 2 cut(s) 43, 256
MluNI TGGCCA 1 cut(s) 427
Mly113I GGCGCC 1 cut(s) 267
MlyI GAGTC 3 cut(s) 443, 506, 701
MmeI TCCRAC 1 cut(s) 525
Mox20I TGGCCA 1 cut(s) 427
MscI TGGCCA 1 cut(s) 427
MseI TTAA 3 cut(s) 102, 249, 351
Msp20I TGGCCA 1 cut(s) 427
MspA1I CMGCKG 1 cut(s) 236
MspCI CTTAAG 1 cut(s) 248
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 2 cut(s) 52, 143
Mva1269I GAATGC 1 cut(s) 472
MvaI CCWGG 1 cut(s) 143
MwoI GCNNNNNNNGC 3 cut(s) 386, 395, 650
NarI GGCGCC 1 cut(s) 267
NciI CCSGG 1 cut(s) 52
NdeII GATC 6 cut(s) 67, 108, 115, 157, 181, 549
NlaIII CATG 1 cut(s) 653
NlaIV GGNNCC 3 cut(s) 159, 227, 268
NmuCI GTSAC 4 cut(s) 169, 217, 446, 573
NspI RCATGY 1 cut(s) 653
PctI GAATGC 1 cut(s) 472
PfeI GAWTC 3 cut(s) 77, 359, 562
Pfl23II CGTACG 1 cut(s) 454
PkrI GCNGC 6 cut(s) 25, 40, 213, 334, 388, 581
PleI GAGTC 3 cut(s) 443, 505, 701
PluTI GGCGCC 1 cut(s) 270
PpsI GAGTC 3 cut(s) 443, 505, 701
Ppu21I YACGTR 2 cut(s) 458, 744
Psp6I CCWGG 1 cut(s) 141
PspGI CCWGG 1 cut(s) 141
PspLI CGTACG 1 cut(s) 454
PspN4I GGNNCC 3 cut(s) 159, 227, 268
PspPI GGNCC 2 cut(s) 57, 225
PsuI RGATCY 2 cut(s) 157, 181
PvuII CAGCTG 1 cut(s) 236
RsaI GTAC 1 cut(s) 456
RsaNI GTAC 1 cut(s) 455
SaqAI TTAA 3 cut(s) 102, 249, 351
SatI GCNGC 6 cut(s) 24, 39, 212, 333, 387, 580
Sau3AI GATC 6 cut(s) 67, 108, 115, 157, 181, 549
Sau96I GGNCC 2 cut(s) 57, 225
SchI GAGTC 3 cut(s) 443, 506, 701
ScrFI CCNGG 2 cut(s) 52, 143
SfaNI GCATC 1 cut(s) 105
SfcI CTRYAG 1 cut(s) 177
SfoI GGCGCC 1 cut(s) 268
SinI GGWCC 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 248
SmoI CTYRAG 1 cut(s) 248
SnaBI TACGTA 1 cut(s) 744
Sse9I AATT 2 cut(s) 43, 256
SsiI CCGC 2 cut(s) 38, 666
SspDI GGCGCC 1 cut(s) 266
SspMI CTAG 2 cut(s) 204, 407
StyD4I CCNGG 2 cut(s) 50, 141
TaaI ACNGT 1 cut(s) 277
TaiI ACGT 3 cut(s) 325, 460, 746
TaqI TCGA 2 cut(s) 82, 705
TasI AATT 2 cut(s) 43, 256
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 77, 359, 562
Tru1I TTAA 3 cut(s) 102, 249, 351
Tru9I TTAA 3 cut(s) 102, 249, 351
TseFI GTSAC 4 cut(s) 169, 217, 446, 573
TseI GCWGC 5 cut(s) 23, 211, 332, 386, 579
Tsp45I GTSAC 4 cut(s) 169, 217, 446, 573
TspDTI ATGAA 2 cut(s) 90, 162
TspGWI ACGGA 1 cut(s) 442
Vha464I CTTAAG 1 cut(s) 248
VpaK11BI GGWCC 1 cut(s) 225
XapI RAATTY 1 cut(s) 43
XceI RCATGY 1 cut(s) 653
XcmI CCANNNNNNNNNTGG 1 cut(s) 139
XspI CTAG 2 cut(s) 204, 407
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.