FvH4_3g22880

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0015013
Physical Location & Seq
Forward (+)
16027282 .. 16028819
1538 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g22880.t1

Sequence Viewer

Length: 1104 bp
ATGGCTTTCTCCATCTGGGTCTCTCCAAAACCTTCATTTCTCCAAAACCCAAATCCCCTTTTCCCTCAAATCTCACGCCAAACTCGTCATTCCCAATCTTCCAGAACCCAATCAATCCAATGTGGTCTACGTGAGCTCCGGGAGCGAATTGACTCCATCAAAAGCACCCAGAAAATCACAGAAGCCATGAAGCTTGTAGCAGTTGCCAGAGTCCGAAGAGCCCAAGACGCAGTCATCAATGGCAGACCATTTTCAGAGACCCTTGTGGAGGTTCTATACGACATCAATGGGCAGCTTCAAGGTGAAGATATTGATATACCTTTGACGAATGTGAGAGCTGTGAAGAGAGTAGCCATTGTTGTTATTAGCAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAGACCCGAATTGGGGAGCTGAAGAAGCTTGGATTGGAGGTGGTATTGATCAGTGTTGGGAAGAAGGGTAACTCTTATTTTATGCGTAGGCCGGAGATTAAGGTGGATAGGTTGATGGAAGGAGGGACGTTTCCGACTGCCAAAGAGGCTCAGGTGATTGCTGATGATGTGTTTTCGCTTTTTGTTAGTGAGGAGGTTGATAAAGTTGAGCTTGTGTACACTAAATTCGTGTCGTTAGTGAAGTCCGAGCCGGTGATTCAGACATTGCTGCCATTGTCACCTAGGGATGAGGTTGTTGATGTGAATGGGAATTGTGTTGATGCAATTGGGGATGAGATGTTTAGGCTGACTAGTAAAGAAGGGAAGTTGGCTTTGGAGAGGGGGAGTGTGAAGAAGAAAGAGAGGAAGGAAATGTCGCCCCTTATGGAATTTGAGCAGGACCCTGTTCAGATTCTTGATGCCATGATGCCTCTCTATTTGAACAGTCAGATTCTGAGGGCATTGCAGGAGTCAGCAGCTAGTGAGCTCGCTGCGAGAATGAATGCTATGAGTAATGCCACGGATAATGCAGATGAGTTGAAGAAGACCCTTTCGAGATCTTATAATCGAGCTAGGCAGGCAAAGATTACTGGGGAGTTGTTGGAGATTGTTGCTGGAGCTGAGGCACTAAGAGAGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

368

Amino Acids

40.87

Weight (kDa)

8.6

Isoelectric Point (pI)

39.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 43 - 363 1.4e-94 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15700
fragaria_vesca FvH4_3g22880
malus_domestica MD06G1240800.v1.1 MD11G1216600.v1.1
prunus_persica Prupe.4G214800_v2.0.a1
pyrus_communis pycom06g21580 pycom11g19070
rosa_chinensis RchiOBHm_Chr5g0040181
rosa_laevigata RLG00000033963
rosa_roxburghii Rroxscaffold_1G00041100
rosa_rugosa Rorug05G0183900
rosa_samantha Rh5BG274100 Rh5CG307000 Rh5DG282300
rosa_wichuraiana Rw5G025290 Rw5G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AccI GTMKAC 1 cut(s) 127
AcsI RAATTY 2 cut(s) 644, 848
AcuI CTGAAG 1 cut(s) 461
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 3 cut(s) 268, 432, 433
AgsI TTSAA 4 cut(s) 299, 397, 901, 1000
AhlI ACTAGT 1 cut(s) 770
AjuI GAANNNNNNNTTGG 4 cut(s) 437, 469, 776, 808
Alw21I GWGCWC 2 cut(s) 138, 948
Alw26I GTCTC 2 cut(s) 25, 251
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 1 cut(s) 509
ApeKI GCWGC 4 cut(s) 292, 688, 935, 950
ApoI RAATTY 2 cut(s) 644, 848
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 421
AspS9I GGNCC 1 cut(s) 859
AsuC2I CCSGG 1 cut(s) 140
AsuHPI GGTGA 4 cut(s) 314, 586, 685, 690
AvaII GGWCC 1 cut(s) 859
AvrII CCTAGG 1 cut(s) 701
BanII GRGCYC 3 cut(s) 138, 223, 948
BbsI GAAGAC 1 cut(s) 1010
Bbv12I GWGCWC 2 cut(s) 138, 948
BbvCI CCTCAGC 1 cut(s) 1080
BbvI GCAGC 4 cut(s) 304, 675, 937, 947
BccI CCATC 3 cut(s) 20, 164, 529
BclI TGATCA 1 cut(s) 468
BcnI CCSGG 1 cut(s) 140
BcoDI GTCTC 2 cut(s) 25, 251
BcuI ACTAGT 1 cut(s) 770
BfaI CTAG 4 cut(s) 702, 771, 939, 1032
BglI GCCNNNNNGGC 1 cut(s) 566
BglII AGATCT 1 cut(s) 1016
BisI GCNGC 4 cut(s) 293, 689, 936, 951
BlnI CCTAGG 1 cut(s) 701
BlsI GCNGC 4 cut(s) 294, 690, 937, 952
Bme1390I CCNGG 1 cut(s) 140
Bme18I GGWCC 1 cut(s) 859
BmgT120I GGNCC 1 cut(s) 859
BmiI GGNNCC 1 cut(s) 861
BmrFI CCNGG 1 cut(s) 140
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 3 cut(s) 730, 868, 876
BmuI ACTGGG 1 cut(s) 1059
BpiI GAAGAC 1 cut(s) 1010
BpmI CTGGAG 1 cut(s) 1095
Bpu10I CCTNAGC 2 cut(s) 570, 1080
BpuMI CCSGG 1 cut(s) 140
BsaAI YACGTR 1 cut(s) 131
BsaI GGTCTC 2 cut(s) 25, 251
BsaJI CCNNGG 2 cut(s) 701, 978
BsaXI ACNNNNNCTCC 2 cut(s) 120, 150
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 432, 433
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 1 cut(s) 1054
Bse3DI GCAATG 2 cut(s) 683, 920
BseDI CCNNGG 2 cut(s) 701, 978
BseGI GGATG 2 cut(s) 712, 757
BseLI CCNNNNNNNGG 3 cut(s) 268, 432, 433
BseMI GCAATG 2 cut(s) 683, 920
BseMII CTCAG 4 cut(s) 584, 905, 1071, 1089
BseNI ACTGG 1 cut(s) 1054
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 4 cut(s) 304, 675, 937, 947
BshFI GGCC 1 cut(s) 511
BsiHKAI GWGCWC 2 cut(s) 138, 948
BsiSI CCGG 3 cut(s) 139, 512, 671
BslFI GGGAC 1 cut(s) 559
BslI CCNNNNNNNGG 3 cut(s) 268, 432, 433
BsmAI GTCTC 2 cut(s) 25, 251
BsmFI GGGAC 1 cut(s) 559
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 1 cut(s) 511
Bso31I GGTCTC 2 cut(s) 25, 251
Bsp1286I GDGCHC 3 cut(s) 138, 223, 948
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 468, 1016
BspANI GGCC 1 cut(s) 511
BspCNI CTCAG 4 cut(s) 583, 906, 1072, 1090
BspLI GGNNCC 1 cut(s) 861
BspQI GCTCTTC 1 cut(s) 211
BspTNI GGTCTC 2 cut(s) 25, 251
BsrDI GCAATG 2 cut(s) 683, 920
BsrFI RCCGGY 1 cut(s) 670
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 1054
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 2 cut(s) 701, 978
BssMI GATC 2 cut(s) 468, 1016
BssT1I CCWWGG 1 cut(s) 701
Bst4CI ACNGT 1 cut(s) 905
Bst6I CTCTTC 2 cut(s) 211, 338
BstAUI TGTACA 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 131
BstC8I GCNNGC 2 cut(s) 948, 1038
BstDEI CTNAG 6 cut(s) 411, 570, 914, 1080, 1088, 1098
BstDSI CCRYGG 1 cut(s) 978
BstENI CCTNNNNNAGG 1 cut(s) 266
BstF5I GGATG 2 cut(s) 712, 757
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 2 cut(s) 471, 1019
BstMAI GTCTC 2 cut(s) 25, 251
BstMBI GATC 2 cut(s) 468, 1016
BstMWI GCNNNNNNNGC 5 cut(s) 142, 227, 445, 566, 1037
BstSCI CCNGG 1 cut(s) 138
BstV1I GCAGC 4 cut(s) 304, 675, 937, 947
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 1 cut(s) 1016
BstYI RGATCY 1 cut(s) 1016
BsuRI GGCC 1 cut(s) 511
BtgI CCRYGG 1 cut(s) 978
BtsCI GGATG 2 cut(s) 712, 757
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 2 cut(s) 376, 478
Cac8I GCNNGC 2 cut(s) 948, 1038
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 670
Cfr13I GGNCC 1 cut(s) 859
CseI GACGC 1 cut(s) 236
Csp6I GTAC 1 cut(s) 637
CviAII CATG 2 cut(s) 187, 883
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 6 cut(s) 411, 570, 914, 1080, 1088, 1098
DpnI GATC 2 cut(s) 470, 1018
DpnII GATC 2 cut(s) 468, 1016
Eam1104I CTCTTC 2 cut(s) 211, 338
EarI CTCTTC 2 cut(s) 211, 338
Ecl136II GAGCTC 2 cut(s) 136, 946
Eco130I CCWWGG 1 cut(s) 701
Eco24I GRGCYC 3 cut(s) 138, 223, 948
Eco31I GGTCTC 2 cut(s) 25, 251
Eco47I GGWCC 1 cut(s) 859
Eco53kI GAGCTC 2 cut(s) 136, 946
Eco57I CTGAAG 1 cut(s) 461
EcoICRI GAGCTC 2 cut(s) 136, 946
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoO109I RGGNCCY 1 cut(s) 859
EcoT14I CCWWGG 1 cut(s) 701
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 3 cut(s) 138, 223, 948
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 2 cut(s) 190, 886
FaiI YATR 8 cut(s) 188, 277, 317, 503, 845, 884, 968, 1023
FalI AAGNNNNNCTT 2 cut(s) 615, 647
FaqI GGGAC 1 cut(s) 559
FatI CATG 2 cut(s) 186, 882
FbaI TGATCA 1 cut(s) 468
FblI GTMKAC 1 cut(s) 127
Fnu4HI GCNGC 4 cut(s) 293, 689, 936, 951
FokI GGATG 2 cut(s) 719, 764
FriOI GRGCYC 3 cut(s) 138, 223, 948
Fsp4HI GCNGC 4 cut(s) 293, 689, 936, 951
FspBI CTAG 4 cut(s) 702, 771, 939, 1032
GlaI GCGC 1 cut(s) 420
GluI GCNGC 4 cut(s) 293, 689, 936, 951
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 1 cut(s) 511
HapII CCGG 3 cut(s) 139, 512, 671
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 421
Hin1II CATG 2 cut(s) 190, 886
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HindIII AAGCTT 2 cut(s) 191, 446
HinfI GANTC 7 cut(s) 152, 210, 676, 871, 910, 929, 1094
HpaII CCGG 3 cut(s) 139, 512, 671
HphI GGTGA 4 cut(s) 314, 586, 685, 690
Hpy166II GTNNAC 3 cut(s) 128, 637, 639
Hpy188I TCNGA 9 cut(s) 215, 256, 555, 667, 681, 870, 909, 915, 1099
Hpy188III TCNNGA 3 cut(s) 102, 875, 1014
Hpy8I GTNNAC 3 cut(s) 128, 637, 639
HpyAV CCTTC 5 cut(s) 42, 478, 533, 773, 820
HpyCH4III ACNGT 1 cut(s) 905
HpyCH4IV ACGT 2 cut(s) 130, 548
HpyCH4V TGCA 4 cut(s) 404, 743, 925, 989
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 227, 445, 566, 1037
HpyF3I CTNAG 6 cut(s) 411, 570, 914, 1080, 1088, 1098
HpySE526I ACGT 2 cut(s) 130, 548
Hsp92II CATG 2 cut(s) 190, 886
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 2 cut(s) 468, 1016
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 4 cut(s) 141, 142, 436, 1076
Lsp1109I GCAGC 4 cut(s) 304, 675, 937, 947
LweI GCATC 3 cut(s) 730, 868, 876
MaeI CTAG 4 cut(s) 702, 771, 939, 1032
MaeII ACGT 2 cut(s) 130, 548
MaeIII GTNAC 2 cut(s) 488, 696
MalI GATC 2 cut(s) 470, 1018
MboI GATC 2 cut(s) 468, 1016
MfeI CAATTG 1 cut(s) 744
MflI RGATCY 1 cut(s) 1016
MhlI GDGCHC 3 cut(s) 138, 223, 948
MluCI AATT 6 cut(s) 147, 429, 644, 730, 744, 848
MlyI GAGTC 4 cut(s) 146, 219, 938, 1103
MmeI TCCRAC 2 cut(s) 578, 1041
Mph1103I ATGCAT 1 cut(s) 406
MseI TTAA 1 cut(s) 519
MspI CCGG 3 cut(s) 139, 512, 671
MspR9I CCNGG 1 cut(s) 140
MunI CAATTG 1 cut(s) 744
Mva1269I GAATGC 1 cut(s) 967
MwoI GCNNNNNNNGC 5 cut(s) 142, 227, 445, 566, 1037
NciI CCSGG 1 cut(s) 140
NdeII GATC 2 cut(s) 468, 1016
NlaIII CATG 2 cut(s) 190, 886
NlaIV GGNNCC 1 cut(s) 861
NmuCI GTSAC 1 cut(s) 696
NsiI ATGCAT 1 cut(s) 406
PciSI GCTCTTC 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 967
PfeI GAWTC 3 cut(s) 676, 871, 910
PflFI GACNNNGTC 1 cut(s) 230
PfoI TCCNGGA 1 cut(s) 138
PkrI GCNGC 4 cut(s) 294, 690, 937, 952
PleI GAGTC 4 cut(s) 146, 218, 937, 1102
PpsI GAGTC 4 cut(s) 146, 218, 937, 1102
Ppu21I YACGTR 1 cut(s) 131
PpuMI RGGWCCY 1 cut(s) 859
PsiI TTATAA 1 cut(s) 1023
Psp124BI GAGCTC 2 cut(s) 138, 948
Psp5II RGGWCCY 1 cut(s) 859
PspN4I GGNNCC 1 cut(s) 861
PspPI GGNCC 1 cut(s) 859
PspPPI RGGWCCY 1 cut(s) 859
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 1016
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 2 cut(s) 138, 948
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 1 cut(s) 519
SatI GCNGC 4 cut(s) 293, 689, 936, 951
Sau3AI GATC 2 cut(s) 468, 1016
Sau96I GGNCC 1 cut(s) 859
SchI GAGTC 4 cut(s) 146, 219, 938, 1103
ScrFI CCNGG 1 cut(s) 140
SduI GDGCHC 3 cut(s) 138, 223, 948
SfaNI GCATC 3 cut(s) 730, 868, 876
SinI GGWCC 1 cut(s) 859
SpeI ACTAGT 1 cut(s) 770
Sse9I AATT 6 cut(s) 147, 429, 644, 730, 744, 848
SspMI CTAG 4 cut(s) 702, 771, 939, 1032
SstI GAGCTC 2 cut(s) 138, 948
StyD4I CCNGG 1 cut(s) 138
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 1 cut(s) 905
TaiI ACGT 2 cut(s) 133, 551
TaqI TCGA 2 cut(s) 1013, 1027
TasI AATT 6 cut(s) 147, 429, 644, 730, 744, 848
TatI WGTACW 1 cut(s) 636
TfiI GAWTC 3 cut(s) 676, 871, 910
Tru1I TTAA 1 cut(s) 519
Tru9I TTAA 1 cut(s) 519
TscAI CASTG 2 cut(s) 376, 478
TseFI GTSAC 1 cut(s) 696
TseI GCWGC 4 cut(s) 292, 688, 935, 950
Tsp45I GTSAC 1 cut(s) 696
TspDTI ATGAA 3 cut(s) 24, 203, 974
TspGWI ACGGA 1 cut(s) 995
TspRI CASTG 2 cut(s) 376, 478
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 859
XagI CCTNNNNNAGG 1 cut(s) 266
XapI RAATTY 2 cut(s) 644, 848
XmaJI CCTAGG 1 cut(s) 701
XmiI GTMKAC 1 cut(s) 127
XspI CTAG 4 cut(s) 702, 771, 939, 1032
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.