MD06G1240800.v1.1

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0015013
Physical Location & Seq
Forward (+)
37046193 .. 37047305
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1240800.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGCTGTGTCCAATTCAATCCTGTGGGTCTCTGCAAAACCCCCAATTTCTAACATATTTCTCCAAAACCCTAAACACCTTTTGCCCCAAATCTCACCCCAACCTCTCCGTTTTCAATCTTCAGCAATCCACTGCGGTCTGCGTGAGATCCGGGTCCGAATTGATTCCATAAAAAATACCCATAAAATCACCGAAGCCATGAAGCTCGTGGCGGCTGCCAGGGTTCGGAGGGCCCAGGAAGCAGTCATCAATGGCAGACCCTTTGCTGAGACGCTTGTGGAGGTCCTGTACGACATAAATGAGCGGCTTCAGTGTGAAGACATTGATGTCCCTCTCACAAATGTTAGGCCTGTGAAGAAAGTTGCCATTGTTGTGATCACCGCTGATCGAGGCCTCTGCGGCGGCTTCAACAACTTGGTGGTAAAAAAGGCCGAGGCCCGAATCGCGGAATTGAAGAAACTTGGGTTAGATATCACTCTGATCAGTGTTGGAAAAAAGGGTAACTCGTATTTTATGCGTAGGCCTGAGATTTGTGTTGATAGGTTTATTGAAGGTGGGTTATTTGCAACAACAAAAGAGGCTCAGGTCATTGCTGATGATGTTTTTTCGCTGTTTGTTAGCGAAGAGGTTGATAAAGTTGAGCTTGTGTACACTAAATTTGTGTCGTTGGTGAAATCTGAGCCGGTTATACATACATTGCTTCCATTGTCTCCGAAGGGGGAGGTTGTTGATGTGAATGGGAATAGTGTTGATGCAATTGAGGATGAGTTCTTTAGGCTGACAACTAAGGAAGGTAAACTGAGTGTGGAGAGGGAGAGTGTGAAGATAAAGAGGGAAGGGCTTTTGCCGGTTATGGAATTTGAACAAGACCCTGTTCAGATCCTTGATGCCATGATGCCTCTCTACTTGAACAGTCAGATTTTGAGGGCATTGCAGGAATCAACGGCAAGTGAACTCGCGGCGAGAATGAATGCTATGAGCAATGCCACCGACAATGCAGTTGACTTGACGAAGACTCTTTCAAATGTTTACAATCGGCAACGACAAGCAAAGATTACAGGGGAGATATTGGAGATTGTTGCTGGAGCCGAAGCACTAAAGGAGTTTGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

371

Amino Acids

41.17

Weight (kDa)

6.22

Isoelectric Point (pI)

41.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 47 - 366 3.6e-91 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15700
fragaria_vesca FvH4_3g22880
malus_domestica MD06G1240800.v1.1 MD11G1216600.v1.1
prunus_persica Prupe.4G214800_v2.0.a1
pyrus_communis pycom06g21580 pycom11g19070
rosa_chinensis RchiOBHm_Chr5g0040181
rosa_laevigata RLG00000033963
rosa_roxburghii Rroxscaffold_1G00041100
rosa_rugosa Rorug05G0183900
rosa_samantha Rh5BG274100 Rh5CG307000 Rh5DG282300
rosa_wichuraiana Rw5G025290 Rw5G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 304
AccII CGCG 2 cut(s) 446, 959
AciI CCGC 8 cut(s) 135, 212, 304, 381, 399, 402, 446, 959
AclWI GGATC 2 cut(s) 142, 874
AcsI RAATTY 2 cut(s) 656, 857
AcuI CTGAAG 2 cut(s) 105, 293
AfaI GTAC 2 cut(s) 290, 650
AfiI CCNNNNNNNGG 2 cut(s) 225, 445
AgsI TTSAA 8 cut(s) 18, 116, 409, 454, 551, 863, 910, 1023
AjnI CCWGG 2 cut(s) 218, 234
AluBI AGCT 2 cut(s) 205, 643
AluI AGCT 2 cut(s) 205, 643
Alw26I GTCTC 3 cut(s) 34, 263, 714
AlwI GGATC 2 cut(s) 142, 874
AoxI GGCC 6 cut(s) 231, 347, 391, 429, 435, 521
ApaI GGGCCC 1 cut(s) 235
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 2 cut(s) 656, 857
Asp700I GAANNNNTTC 1 cut(s) 163
AspS9I GGNCC 5 cut(s) 154, 231, 232, 283, 436
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 4 cut(s) 87, 181, 370, 682
AvaII GGWCC 2 cut(s) 154, 283
BaeGI GKGCMC 1 cut(s) 235
BanII GRGCYC 1 cut(s) 235
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 2 cut(s) 324, 1019
BbvI GCAGC 1 cut(s) 202
BceAI ACGGC 1 cut(s) 960
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BciT130I CCWGG 2 cut(s) 220, 236
BclI TGATCA 2 cut(s) 375, 480
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 3 cut(s) 34, 263, 714
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 6 cut(s) 213, 216, 305, 400, 403, 960
BlsI GCNGC 6 cut(s) 214, 217, 306, 401, 404, 961
Bme1390I CCNGG 3 cut(s) 152, 220, 236
Bme18I GGWCC 2 cut(s) 154, 283
BmgT120I GGNCC 5 cut(s) 154, 231, 232, 283, 436
BmiI GGNNCC 3 cut(s) 155, 233, 1087
BmrFI CCNGG 3 cut(s) 152, 220, 236
BmsI GCATC 3 cut(s) 742, 877, 885
BpiI GAAGAC 2 cut(s) 324, 1019
BpmI CTGGAG 1 cut(s) 1104
Bpu10I CCTNAGC 1 cut(s) 582
BpuMI CCSGG 1 cut(s) 152
BsaI GGTCTC 1 cut(s) 34
BsaJI CCNNGG 3 cut(s) 219, 234, 432
BsaXI ACNNNNNCTCC 3 cut(s) 272, 302, 1094
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 445
Bse118I RCCGGY 2 cut(s) 682, 847
Bse3DI GCAATG 4 cut(s) 588, 695, 929, 988
BseBI CCWGG 2 cut(s) 220, 236
BseDI CCNNGG 3 cut(s) 219, 234, 432
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 2 cut(s) 225, 445
BseMI GCAATG 4 cut(s) 588, 695, 929, 988
BseMII CTCAG 5 cut(s) 258, 516, 596, 669, 791
BseSI GKGCMC 1 cut(s) 235
BseXI GCAGC 1 cut(s) 202
Bsh1236I CGCG 2 cut(s) 446, 959
BshFI GGCC 6 cut(s) 233, 349, 393, 431, 437, 523
BsiSI CCGG 3 cut(s) 151, 683, 848
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 2 cut(s) 225, 445
BsmAI GTCTC 3 cut(s) 34, 263, 714
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 6 cut(s) 233, 349, 393, 431, 437, 523
Bso31I GGTCTC 1 cut(s) 34
Bsp120I GGGCCC 1 cut(s) 231
Bsp1286I GDGCHC 1 cut(s) 235
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 5 cut(s) 147, 375, 385, 480, 879
BspACI CCGC 8 cut(s) 135, 212, 304, 381, 399, 402, 446, 959
BspANI GGCC 6 cut(s) 233, 349, 393, 431, 437, 523
BspCNI CTCAG 5 cut(s) 259, 517, 595, 670, 792
BspFNI CGCG 2 cut(s) 446, 959
BspLI GGNNCC 3 cut(s) 155, 233, 1087
BspPI GGATC 2 cut(s) 142, 874
BspTNI GGTCTC 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 304
BsrDI GCAATG 4 cut(s) 588, 695, 929, 988
BsrFI RCCGGY 2 cut(s) 682, 847
BsrGI TGTACA 1 cut(s) 648
BssAI RCCGGY 2 cut(s) 682, 847
BssECI CCNNGG 3 cut(s) 219, 234, 432
BssMI GATC 5 cut(s) 147, 375, 385, 480, 879
BssSI CACGAG 1 cut(s) 206
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 220, 236
Bst4CI ACNGT 1 cut(s) 914
Bst6I CTCTTC 1 cut(s) 618
BstAUI TGTACA 1 cut(s) 648
BstDEI CTNAG 6 cut(s) 267, 525, 582, 678, 786, 800
BstF5I GGATG 1 cut(s) 769
BstFNI CGCG 2 cut(s) 446, 959
BstKTI GATC 5 cut(s) 150, 378, 388, 483, 882
BstMAI GTCTC 3 cut(s) 34, 263, 714
BstMBI GATC 5 cut(s) 147, 375, 385, 480, 879
BstMWI GCNNNNNNNGC 3 cut(s) 239, 399, 443
BstNI CCWGG 2 cut(s) 220, 236
BstSCI CCNGG 3 cut(s) 150, 218, 234
BstSLI GKGCMC 1 cut(s) 235
BstUI CGCG 2 cut(s) 446, 959
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 2 cut(s) 324, 1019
BstX2I RGATCY 2 cut(s) 147, 879
BstYI RGATCY 2 cut(s) 147, 879
BsuRI GGCC 6 cut(s) 233, 349, 393, 431, 437, 523
BtsCI GGATG 1 cut(s) 769
BtsI GCAGTG 1 cut(s) 130
BtsIMutI CAGTG 3 cut(s) 130, 317, 490
Cfr10I RCCGGY 2 cut(s) 682, 847
Cfr13I GGNCC 5 cut(s) 154, 231, 232, 283, 436
CseI GACGC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 289, 649
CviAII CATG 2 cut(s) 199, 892
CviQI GTAC 2 cut(s) 289, 649
DdeI CTNAG 6 cut(s) 267, 525, 582, 678, 786, 800
DpnI GATC 5 cut(s) 149, 377, 387, 482, 881
DpnII GATC 5 cut(s) 147, 375, 385, 480, 879
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Eco147I AGGCCT 3 cut(s) 349, 393, 523
Eco24I GRGCYC 1 cut(s) 235
Eco31I GGTCTC 1 cut(s) 34
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 2 cut(s) 154, 283
Eco57I CTGAAG 2 cut(s) 105, 293
EcoO109I RGGNCCY 2 cut(s) 231, 283
EcoRII CCWGG 2 cut(s) 218, 234
EcoRV GATATC 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 235
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 2 cut(s) 202, 895
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 198, 891
FbaI TGATCA 2 cut(s) 375, 480
Fnu4HI GCNGC 6 cut(s) 213, 216, 305, 400, 403, 960
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 235
Fsp4HI GCNGC 6 cut(s) 213, 216, 305, 400, 403, 960
GluI GCNGC 6 cut(s) 213, 216, 305, 400, 403, 960
GsuI CTGGAG 1 cut(s) 1104
HaeIII GGCC 6 cut(s) 233, 349, 393, 431, 437, 523
HapII CCGG 3 cut(s) 151, 683, 848
HgaI GACGC 1 cut(s) 280
Hin1II CATG 2 cut(s) 202, 895
HincII GTYRAC 1 cut(s) 1003
HindII GTYRAC 1 cut(s) 1003
HinfI GANTC 4 cut(s) 164, 441, 938, 1015
HpaII CCGG 3 cut(s) 151, 683, 848
HphI GGTGA 4 cut(s) 87, 181, 370, 682
Hpy166II GTNNAC 6 cut(s) 649, 651, 797, 953, 1003, 1030
Hpy188I TCNGA 7 cut(s) 158, 228, 480, 679, 714, 879, 918
Hpy8I GTNNAC 6 cut(s) 649, 651, 797, 953, 1003, 1030
HpyAV CCTTC 4 cut(s) 545, 709, 785, 830
HpyCH4III ACNGT 1 cut(s) 914
HpyCH4V TGCA 5 cut(s) 35, 566, 755, 934, 998
HpyF10VI GCNNNNNNNGC 3 cut(s) 239, 399, 443
HpyF3I CTNAG 6 cut(s) 267, 525, 582, 678, 786, 800
Hsp92II CATG 2 cut(s) 202, 895
Ksp22I TGATCA 2 cut(s) 375, 480
Kzo9I GATC 5 cut(s) 147, 375, 385, 480, 879
LmnI GCTCC 1 cut(s) 1085
Lsp1109I GCAGC 1 cut(s) 202
LweI GCATC 3 cut(s) 742, 877, 885
MaeIII GTNAC 1 cut(s) 500
MalI GATC 5 cut(s) 149, 377, 387, 482, 881
MbiI CCGCTC 1 cut(s) 304
MboI GATC 5 cut(s) 147, 375, 385, 480, 879
MboII GAAGA 7 cut(s) 111, 329, 367, 466, 635, 835, 1024
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 2 cut(s) 147, 879
MhlI GDGCHC 1 cut(s) 235
MluCI AATT 7 cut(s) 13, 45, 159, 449, 656, 756, 857
MlyI GAGTC 1 cut(s) 1009
MmeI TCCRAC 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 163
MslI CAYNNNNRTG 1 cut(s) 371
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 3 cut(s) 151, 683, 848
MspR9I CCNGG 3 cut(s) 152, 220, 236
MunI CAATTG 1 cut(s) 756
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 2 cut(s) 220, 236
MvnI CGCG 2 cut(s) 446, 959
MwoI GCNNNNNNNGC 3 cut(s) 239, 399, 443
NciI CCSGG 1 cut(s) 152
NdeII GATC 5 cut(s) 147, 375, 385, 480, 879
NlaIII CATG 2 cut(s) 202, 895
NlaIV GGNNCC 3 cut(s) 155, 233, 1087
NmeAIII GCCGAG 1 cut(s) 457
PceI AGGCCT 3 cut(s) 349, 393, 523
PctI GAATGC 1 cut(s) 976
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 3 cut(s) 164, 441, 938
PkrI GCNGC 6 cut(s) 214, 217, 306, 401, 404, 961
PleI GAGTC 1 cut(s) 1009
PpsI GAGTC 1 cut(s) 1009
PpuMI RGGWCCY 1 cut(s) 283
Psp5II RGGWCCY 1 cut(s) 283
Psp6I CCWGG 2 cut(s) 218, 234
PspGI CCWGG 2 cut(s) 218, 234
PspN4I GGNNCC 3 cut(s) 155, 233, 1087
PspOMI GGGCCC 1 cut(s) 231
PspPI GGNCC 5 cut(s) 154, 231, 232, 283, 436
PspPPI RGGWCCY 1 cut(s) 283
PsuI RGATCY 2 cut(s) 147, 879
RsaI GTAC 2 cut(s) 290, 650
RsaNI GTAC 2 cut(s) 289, 649
RseI CAYNNNNRTG 1 cut(s) 371
SatI GCNGC 6 cut(s) 213, 216, 305, 400, 403, 960
Sau3AI GATC 5 cut(s) 147, 375, 385, 480, 879
Sau96I GGNCC 5 cut(s) 154, 231, 232, 283, 436
SchI GAGTC 1 cut(s) 1009
ScrFI CCNGG 3 cut(s) 152, 220, 236
SduI GDGCHC 1 cut(s) 235
SfaNI GCATC 3 cut(s) 742, 877, 885
SinI GGWCC 2 cut(s) 154, 283
SmiMI CAYNNNNRTG 1 cut(s) 371
Sse9I AATT 7 cut(s) 13, 45, 159, 449, 656, 756, 857
SseBI AGGCCT 3 cut(s) 349, 393, 523
SsiI CCGC 8 cut(s) 135, 212, 304, 381, 399, 402, 446, 959
StuI AGGCCT 3 cut(s) 349, 393, 523
StyD4I CCNGG 3 cut(s) 150, 218, 234
TaaI ACNGT 1 cut(s) 914
TaqI TCGA 1 cut(s) 388
TasI AATT 7 cut(s) 13, 45, 159, 449, 656, 756, 857
TatI WGTACW 1 cut(s) 648
TauI GCSGC 5 cut(s) 215, 307, 402, 405, 962
TfiI GAWTC 3 cut(s) 164, 441, 938
TscAI CASTG 3 cut(s) 137, 317, 490
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 215, 983
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 3 cut(s) 137, 317, 490
VpaK11BI GGWCC 2 cut(s) 154, 283
XapI RAATTY 2 cut(s) 656, 857
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.