pycom11g19070

ATP synthase gamma chain

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
Physical Location & Seq
Reverse (-)
21344959 .. 21346301
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g19070.1

Sequence Viewer

Length: 1146 bp
ATGCTCATTCTGCAAAACCAAAACCAGAACCCAATGGCGATGTCCAATTCAATCATGTGGGTATCTGCAAAACCCCTATTTTCCCACACATTTCTCCAAAACCCTAAACCCCTTTTGCCCCAAATCTCACCCCAACCTCTCCGTTCTCGATCTTCAGCAACCCGCTGCGGTCTGCGTGAGCTCCGAGGCCGAATCGATTCCATAAAAAATACCCAGAAAATCACCGAAGCCATGAAGCTCGTGGCGGCTGCCAGGGTTCGAAGGGCCCAGGAAGCAGTCATCAATGGCCGACCCTTTGCTGAGACGCTTGTGGAGGTCCTGTACGACATCAATGAGCGGCTTCAGTGTGAAGACATTGACGTCCGTCTCACAAATGTTAGACCCGTCAGGAAAGTTGCCATTGTCGTCATCACAGCCGACCGAGGCCTCTGCGGCGGCTTCAACAACTCCGTGGTCAAAAAGACCGAGGCCCGAATCGCGGAATTGAAGAAACTTGGGTTGGATTTCACTCTGATCAGTGTTGGCAAAAAGGGTAACTCGTATTTCATGCGTAGGCCTGAGATTTGTGTTGATAGGTTTATTGAAGGTGGGTTGTTTGCAACAGCAAAAGAGGCTCAGGTCATTGCTGATGACGTTTTTTCGCTGTTTGTTAGCGAAGAGGTTGATAAAGTTGAGCTTGTGTACACTAAATTCGTGTCGTTGGTGAAATCCGAACCGGTTATTCATACATTGCTTCCATTGTCGCCGAGGGGAGAGGTTGTTGATGTGAATGGGAGTAGCGTCGATGCAATGGAGGATGAGTTCTTTAGGTTGACAACTAAAAAAGGCAAACTGAGTGTGGAGAGGGAGAGTGTGAAGATAAAGAGGGAAGGGCTTTCGCCGGTTATGGAATTTGAACAAGACCCTGTTCAGATCCTTGATGCCATGATGCCTCTCTACTTGAACAGCCAGATTCTGAAGGCACTACAGGAATCAACAGCAAGTGAGCTCGCAGCGAGAATGAATGCTATGAGTAATGCCACTGAGAATGCAGTCGACTTGACGAAGACTCTTTCGAATGTTTACAATCGGCAACGACAGGGAAAGATTACAGGGGAGATATTGGAGATTGTTGCTGGAGCTGAGGCACTCAAGGAGTTTGAGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

382

Amino Acids

42.51

Weight (kDa)

8.54

Isoelectric Point (pI)

39.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 58 - 377 3.1e-90 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15700
fragaria_vesca FvH4_3g22880
malus_domestica MD06G1240800.v1.1 MD11G1216600.v1.1
prunus_persica Prupe.4G214800_v2.0.a1
pyrus_communis pycom06g21580 pycom11g19070
rosa_chinensis RchiOBHm_Chr5g0040181
rosa_laevigata RLG00000033963
rosa_roxburghii Rroxscaffold_1G00041100
rosa_rugosa Rorug05G0183900
rosa_samantha Rh5BG274100 Rh5CG307000 Rh5DG282300
rosa_wichuraiana Rw5G025290 Rw5G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 359
AatII GACGTC 1 cut(s) 363
AccBSI CCGCTC 1 cut(s) 337
AccI GTMKAC 1 cut(s) 1035
AccII CGCG 1 cut(s) 479
AciI CCGC 7 cut(s) 163, 168, 245, 337, 432, 435, 479
AclWI GGATC 1 cut(s) 907
AcoI YGGCCR 1 cut(s) 286
AcsI RAATTY 2 cut(s) 689, 890
AcuI CTGAAG 3 cut(s) 138, 326, 977
AcyI GRCGYC 1 cut(s) 360
AfaI GTAC 2 cut(s) 323, 683
AfiI CCNNNNNNNGG 1 cut(s) 478
AgeI ACCGGT 1 cut(s) 715
AgsI TTSAA 6 cut(s) 51, 442, 487, 584, 896, 943
AjnI CCWGG 2 cut(s) 251, 267
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AloI GAACNNNNNNTCC 2 cut(s) 785, 817
AluBI AGCT 5 cut(s) 181, 238, 676, 988, 1121
AluI AGCT 5 cut(s) 181, 238, 676, 988, 1121
Alw21I GWGCWC 2 cut(s) 183, 990
Alw26I GTCTC 2 cut(s) 296, 371
AlwI GGATC 1 cut(s) 907
AlwNI CAGNNNCTG 1 cut(s) 955
AoxI GGCC 6 cut(s) 187, 264, 286, 424, 468, 554
ApaI GGGCCC 1 cut(s) 268
ApeKI GCWGC 3 cut(s) 165, 248, 992
ApoI RAATTY 2 cut(s) 689, 890
AsiGI ACCGGT 1 cut(s) 715
Asp700I GAANNNNTTC 1 cut(s) 196
AspS9I GGNCC 4 cut(s) 264, 265, 316, 469
AsuHPI GGTGA 3 cut(s) 120, 214, 715
AsuII TTCGAA 2 cut(s) 259, 1055
AvaII GGWCC 1 cut(s) 316
BaeGI GKGCMC 1 cut(s) 268
BanII GRGCYC 3 cut(s) 183, 268, 990
BauI CACGAG 1 cut(s) 239
BbsI GAAGAC 2 cut(s) 357, 1052
Bbv12I GWGCWC 2 cut(s) 183, 990
BbvCI CCTCAGC 1 cut(s) 1122
BbvI GCAGC 3 cut(s) 152, 235, 1004
BcgI CGANNNNNNTGC 2 cut(s) 411, 445
BciT130I CCWGG 2 cut(s) 253, 269
BclI TGATCA 1 cut(s) 513
BcoDI GTCTC 2 cut(s) 296, 371
BfmI CTRYAG 1 cut(s) 965
BglI GCCNNNNNGGC 1 cut(s) 432
BisI GCNGC 7 cut(s) 166, 246, 249, 338, 433, 436, 993
BlsI GCNGC 7 cut(s) 167, 247, 250, 339, 434, 437, 994
Bme1390I CCNGG 2 cut(s) 253, 269
Bme18I GGWCC 1 cut(s) 316
BmgT120I GGNCC 4 cut(s) 264, 265, 316, 469
BmiI GGNNCC 1 cut(s) 266
BmrFI CCNGG 2 cut(s) 253, 269
BmsI GCATC 3 cut(s) 775, 910, 918
BoxI GACNNNNGTC 1 cut(s) 363
BpiI GAAGAC 2 cut(s) 357, 1052
BpmI CTGGAG 1 cut(s) 1137
Bpu10I CCTNAGC 2 cut(s) 615, 1122
Bpu14I TTCGAA 2 cut(s) 259, 1055
BpuEI CTTGAG 1 cut(s) 1115
Bsa29I ATCGAT 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 360
BsaJI CCNNGG 7 cut(s) 184, 252, 267, 421, 450, 465, 746
BsaWI WCCGGW 1 cut(s) 715
BsaXI ACNNNNNCTCC 7 cut(s) 305, 335, 744, 774, 785, 815, 1127
Bsc4I CCNNNNNNNGG 1 cut(s) 478
Bse118I RCCGGY 2 cut(s) 715, 880
Bse3DI GCAATG 3 cut(s) 621, 728, 795
BseBI CCWGG 2 cut(s) 253, 269
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 7 cut(s) 184, 252, 267, 421, 450, 465, 746
BseGI GGATG 1 cut(s) 802
BseLI CCNNNNNNNGG 1 cut(s) 478
BseMI GCAATG 3 cut(s) 621, 728, 795
BseMII CTCAG 6 cut(s) 291, 549, 629, 824, 1014, 1113
BseSI GKGCMC 1 cut(s) 268
BseXI GCAGC 3 cut(s) 152, 235, 1004
Bsh1236I CGCG 1 cut(s) 479
Bsh1285I CGRYCG 1 cut(s) 421
BshFI GGCC 6 cut(s) 189, 266, 288, 426, 470, 556
BshTI ACCGGT 1 cut(s) 715
BshVI ATCGAT 1 cut(s) 195
BsiEI CGRYCG 1 cut(s) 421
BsiHKAI GWGCWC 2 cut(s) 183, 990
BsiSI CCGG 2 cut(s) 716, 881
BslI CCNNNNNNNGG 1 cut(s) 478
BsmAI GTCTC 2 cut(s) 296, 371
BsmBI CGTCTC 2 cut(s) 296, 371
BsmI GAATGC 2 cut(s) 1009, 1033
BsnI GGCC 6 cut(s) 189, 266, 288, 426, 470, 556
Bsp119I TTCGAA 2 cut(s) 259, 1055
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 3 cut(s) 183, 268, 990
Bsp1407I TGTACA 1 cut(s) 681
Bsp143I GATC 3 cut(s) 149, 513, 912
BspACI CCGC 7 cut(s) 163, 168, 245, 337, 432, 435, 479
BspANI GGCC 6 cut(s) 189, 266, 288, 426, 470, 556
BspCNI CTCAG 6 cut(s) 292, 550, 628, 825, 1015, 1114
BspDI ATCGAT 1 cut(s) 195
BspFNI CGCG 1 cut(s) 479
BspLI GGNNCC 1 cut(s) 266
BspPI GGATC 1 cut(s) 907
BspT104I TTCGAA 2 cut(s) 259, 1055
BsrBI CCGCTC 1 cut(s) 337
BsrDI GCAATG 3 cut(s) 621, 728, 795
BsrFI RCCGGY 2 cut(s) 715, 880
BsrGI TGTACA 1 cut(s) 681
BssAI RCCGGY 2 cut(s) 715, 880
BssECI CCNNGG 7 cut(s) 184, 252, 267, 421, 450, 465, 746
BssMI GATC 3 cut(s) 149, 513, 912
BssNI GRCGYC 1 cut(s) 360
BssSI CACGAG 1 cut(s) 239
Bst2BI CACGAG 1 cut(s) 239
Bst2UI CCWGG 2 cut(s) 253, 269
Bst6I CTCTTC 1 cut(s) 651
BstACI GRCGYC 1 cut(s) 360
BstAUI TGTACA 1 cut(s) 681
BstBI TTCGAA 2 cut(s) 259, 1055
BstC8I GCNNGC 1 cut(s) 990
BstDEI CTNAG 6 cut(s) 300, 558, 615, 833, 1023, 1122
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 802
BstFNI CGCG 1 cut(s) 479
BstKTI GATC 3 cut(s) 152, 516, 915
BstMAI GTCTC 2 cut(s) 296, 371
BstMBI GATC 3 cut(s) 149, 513, 912
BstMCI CGRYCG 1 cut(s) 421
BstMWI GCNNNNNNNGC 5 cut(s) 10, 272, 432, 476, 611
BstNI CCWGG 2 cut(s) 253, 269
BstPAI GACNNNNGTC 1 cut(s) 363
BstSCI CCNGG 2 cut(s) 251, 267
BstSFI CTRYAG 1 cut(s) 965
BstSLI GKGCMC 1 cut(s) 268
BstUI CGCG 1 cut(s) 479
BstV1I GCAGC 3 cut(s) 152, 235, 1004
BstV2I GAAGAC 2 cut(s) 357, 1052
BstX2I RGATCY 1 cut(s) 912
BstYI RGATCY 1 cut(s) 912
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 6 cut(s) 189, 266, 288, 426, 470, 556
BsuTUI ATCGAT 1 cut(s) 195
BtgI CCRYGG 1 cut(s) 450
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 1 cut(s) 802
BtsIMutI CAGTG 3 cut(s) 350, 523, 1020
Cac8I GCNNGC 1 cut(s) 990
CaiI CAGNNNCTG 1 cut(s) 955
Cfr10I RCCGGY 2 cut(s) 715, 880
Cfr13I GGNCC 4 cut(s) 264, 265, 316, 469
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 2 cut(s) 313, 769
Csp6I GTAC 2 cut(s) 322, 682
CspAI ACCGGT 1 cut(s) 715
CviAII CATG 4 cut(s) 55, 232, 547, 925
CviQI GTAC 2 cut(s) 322, 682
DdeI CTNAG 6 cut(s) 300, 558, 615, 833, 1023, 1122
DpnI GATC 3 cut(s) 151, 515, 914
DpnII GATC 3 cut(s) 149, 513, 912
DrdI GACNNNNNNGTC 1 cut(s) 359
DseDI GACNNNNNNGTC 1 cut(s) 359
EaeI YGGCCR 1 cut(s) 286
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Ecl136II GAGCTC 2 cut(s) 181, 988
Eco147I AGGCCT 2 cut(s) 426, 556
Eco24I GRGCYC 3 cut(s) 183, 268, 990
Eco47I GGWCC 1 cut(s) 316
Eco53kI GAGCTC 2 cut(s) 181, 988
Eco57I CTGAAG 3 cut(s) 138, 326, 977
EcoICRI GAGCTC 2 cut(s) 181, 988
EcoO109I RGGNCCY 2 cut(s) 264, 316
EcoRII CCWGG 2 cut(s) 251, 267
EcoT38I GRGCYC 3 cut(s) 183, 268, 990
Esp3I CGTCTC 2 cut(s) 296, 371
FaeI CATG 4 cut(s) 58, 235, 550, 928
FaiI YATR 8 cut(s) 56, 203, 233, 548, 726, 887, 926, 1010
FalI AAGNNNNNCTT 2 cut(s) 660, 692
FatI CATG 4 cut(s) 54, 231, 546, 924
FauI CCCGC 1 cut(s) 170
FbaI TGATCA 1 cut(s) 513
FblI GTMKAC 1 cut(s) 1035
Fnu4HI GCNGC 7 cut(s) 166, 246, 249, 338, 433, 436, 993
FokI GGATG 1 cut(s) 809
FriOI GRGCYC 3 cut(s) 183, 268, 990
Fsp4HI GCNGC 7 cut(s) 166, 246, 249, 338, 433, 436, 993
GluI GCNGC 7 cut(s) 166, 246, 249, 338, 433, 436, 993
GsuI CTGGAG 1 cut(s) 1137
HaeIII GGCC 6 cut(s) 189, 266, 288, 426, 470, 556
HapII CCGG 2 cut(s) 716, 881
HgaI GACGC 2 cut(s) 313, 769
Hin1I GRCGYC 1 cut(s) 360
Hin1II CATG 4 cut(s) 58, 235, 550, 928
HincII GTYRAC 2 cut(s) 813, 1036
HindII GTYRAC 2 cut(s) 813, 1036
HinfI GANTC 6 cut(s) 192, 197, 474, 952, 971, 1048
HpaII CCGG 2 cut(s) 716, 881
HphI GGTGA 3 cut(s) 120, 214, 715
Hpy166II GTNNAC 5 cut(s) 682, 684, 813, 1036, 1063
Hpy188I TCNGA 5 cut(s) 185, 513, 712, 912, 957
Hpy188III TCNNGA 2 cut(s) 147, 388
Hpy8I GTNNAC 5 cut(s) 682, 684, 813, 1036, 1063
Hpy99I CGWCG 1 cut(s) 785
HpyAV CCTTC 4 cut(s) 255, 578, 863, 952
HpyCH4IV ACGT 2 cut(s) 360, 633
HpyCH4V TGCA 5 cut(s) 13, 68, 599, 788, 1031
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 272, 432, 476, 611
HpyF3I CTNAG 6 cut(s) 300, 558, 615, 833, 1023, 1122
HpySE526I ACGT 2 cut(s) 360, 633
Hsp92I GRCGYC 1 cut(s) 360
Hsp92II CATG 4 cut(s) 58, 235, 550, 928
Ksp22I TGATCA 1 cut(s) 513
Kzo9I GATC 3 cut(s) 149, 513, 912
LmnI GCTCC 2 cut(s) 186, 1118
Lsp1109I GCAGC 3 cut(s) 152, 235, 1004
LweI GCATC 3 cut(s) 775, 910, 918
MaeII ACGT 2 cut(s) 360, 633
MaeIII GTNAC 1 cut(s) 533
MalI GATC 3 cut(s) 151, 515, 914
MbiI CCGCTC 1 cut(s) 337
MboI GATC 3 cut(s) 149, 513, 912
MboII GAAGA 6 cut(s) 144, 362, 499, 668, 868, 1057
MflI RGATCY 1 cut(s) 912
MhlI GDGCHC 3 cut(s) 183, 268, 990
MluCI AATT 4 cut(s) 46, 482, 689, 890
MlyI GAGTC 1 cut(s) 1042
MmeI TCCRAC 1 cut(s) 480
MroXI GAANNNNTTC 1 cut(s) 196
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 2 cut(s) 716, 881
MspR9I CCNGG 2 cut(s) 253, 269
Mva1269I GAATGC 2 cut(s) 1009, 1033
MvaI CCWGG 2 cut(s) 253, 269
MvnI CGCG 1 cut(s) 479
MwoI GCNNNNNNNGC 5 cut(s) 10, 272, 432, 476, 611
NdeII GATC 3 cut(s) 149, 513, 912
NlaIII CATG 4 cut(s) 58, 235, 550, 928
NlaIV GGNNCC 1 cut(s) 266
NmeAIII GCCGAG 1 cut(s) 771
NspV TTCGAA 2 cut(s) 259, 1055
PceI AGGCCT 2 cut(s) 426, 556
PctI GAATGC 2 cut(s) 1009, 1033
PdmI GAANNNNTTC 1 cut(s) 196
PfeI GAWTC 5 cut(s) 192, 197, 474, 952, 971
PinAI ACCGGT 1 cut(s) 715
PkrI GCNGC 7 cut(s) 167, 247, 250, 339, 434, 437, 994
PleI GAGTC 1 cut(s) 1042
PpsI GAGTC 1 cut(s) 1042
PpuMI RGGWCCY 1 cut(s) 316
PshAI GACNNNNGTC 1 cut(s) 363
Psp124BI GAGCTC 2 cut(s) 183, 990
Psp5II RGGWCCY 1 cut(s) 316
Psp6I CCWGG 2 cut(s) 251, 267
PspGI CCWGG 2 cut(s) 251, 267
PspN4I GGNNCC 1 cut(s) 266
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 4 cut(s) 264, 265, 316, 469
PspPPI RGGWCCY 1 cut(s) 316
PstNI CAGNNNCTG 1 cut(s) 955
PsuI RGATCY 1 cut(s) 912
RsaI GTAC 2 cut(s) 323, 683
RsaNI GTAC 2 cut(s) 322, 682
SacI GAGCTC 2 cut(s) 183, 990
SalI GTCGAC 1 cut(s) 1034
SatI GCNGC 7 cut(s) 166, 246, 249, 338, 433, 436, 993
Sau3AI GATC 3 cut(s) 149, 513, 912
Sau96I GGNCC 4 cut(s) 264, 265, 316, 469
SchI GAGTC 1 cut(s) 1042
ScrFI CCNGG 2 cut(s) 253, 269
SduI GDGCHC 3 cut(s) 183, 268, 990
SfaNI GCATC 3 cut(s) 775, 910, 918
SfcI CTRYAG 1 cut(s) 965
SfuI TTCGAA 2 cut(s) 259, 1055
SinI GGWCC 1 cut(s) 316
SmlI CTYRAG 1 cut(s) 1130
SmoI CTYRAG 1 cut(s) 1130
Sse9I AATT 4 cut(s) 46, 482, 689, 890
SseBI AGGCCT 2 cut(s) 426, 556
SsiI CCGC 7 cut(s) 163, 168, 245, 337, 432, 435, 479
SstI GAGCTC 2 cut(s) 183, 990
StuI AGGCCT 2 cut(s) 426, 556
StyD4I CCNGG 2 cut(s) 251, 267
TaiI ACGT 2 cut(s) 363, 636
TaqI TCGA 6 cut(s) 148, 195, 259, 783, 1035, 1055
TaqII GACCGA 2 cut(s) 435, 479
TasI AATT 4 cut(s) 46, 482, 689, 890
TatI WGTACW 1 cut(s) 681
TauI GCSGC 4 cut(s) 248, 340, 435, 438
TfiI GAWTC 5 cut(s) 192, 197, 474, 952, 971
TscAI CASTG 3 cut(s) 350, 523, 1027
TseI GCWGC 3 cut(s) 165, 248, 992
TspDTI ATGAA 4 cut(s) 248, 535, 713, 1016
TspGWI ACGGA 3 cut(s) 131, 353, 439
TspRI CASTG 3 cut(s) 350, 523, 1027
VpaK11BI GGWCC 1 cut(s) 316
XapI RAATTY 2 cut(s) 689, 890
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 1035
XmnI GAANNNNTTC 1 cut(s) 196
ZraI GACGTC 1 cut(s) 361
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.