Prupe.4G214800_v2.0.a1

ATP synthase gamma chain

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
13433190 .. 13434941
1752 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G214800.1

Sequence Viewer

Length: 1122 bp
ATGACTTTGTCCAATTCAATCATGTGGGTCTCTGCAAAACCTTCATTTTCTAGCTCATTTCTCCAAAACCCTAAACCCCTTTTGCCCCAAATCTCATGCCCAAGTCTCCATTCTCAATCTTCACTAACCCCAACAATCCACTGTGGTCTGCGTGAGCTCCGAGTGCGAATTGATTCCATAAAGAGTACCCAGAAAATCACCGAAGCCATGAAGCTCGTCGCCGCTGCCAGAGTTCGAAGAGCCCAAGAAGCAGTCATCAATGGCCGACCCTTTGCCGAGACCCTCGCGGAGGTCCTTTACGACATCAATGAGAGGCTTCAAGGTGAAGCCATAGATGTGCCCCTGACAAATGTTAGACCCGTCAAAAAAGTTGCTCTTGTGGTCATCACCAGCGACCGCGGTCTCTGTGGTGGTTTCAACAACTTAGTGATAAAAAAGACCCAGACCCGGATCGCCGAATTGAAGAAACTTGGATTGGATGTCACTGTGATCAGTGTCGGCAAAAAGGGTAACTTCTATTTTAAGCGTAGGCCTGAAATTAGCGTTGATAGGTTTATAGAAGGTGGCCTATTTGCAACAACAAAAGAGGCTCAGGCCATTGCGGATGATGTTTTTTCACTTTTTATTAGCGAGGAGGTTGATAAAGTTGAACTTATGTACTCTAAATTTGTGTCATTGGTGAAATCCCAACCGGTTATTCAAACCTTGCTTCCATTGTCACCGAGGGGCGAGGTTGTTGATGGGAATGGGAATTGCGTTGATGCAATGGAGGATGAGTTCTTTAGGCTGACAACAAAGGGAGGCAAACTGAGTGTGGAGAGGGATAGCGTGAAGAAAAAGAGGGAAGGGCTTTCGCCGGTTATGGAATTTGAACAAGACCCTGTTCAGATTATTGATGCCATGATGCCTCTCTACTTGAACAGTCAGATTTTGAGGGCATTGCAGGAATCAACAGCCAGTGAGCTCGCAGCGAGAATGAATGCTATGAGTAATGCGACCGACAATGCAGATGACTTGAAGAAGACTCTTTCAAATTCTTACAATCGTGAACGTCAGGCAAAGATTACAGGGGAGATATTGGAGATTGTTGCTGGAGCTGAGGCACTAAAAGATTTTGAGTAA
Functional Annotation
Pfam Domains
Protein Families

Protein Analysis

374

Amino Acids

41.27

Weight (kDa)

8.21

Isoelectric Point (pI)

38.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15700
fragaria_vesca FvH4_3g22880
malus_domestica MD06G1240800.v1.1 MD11G1216600.v1.1
prunus_persica Prupe.4G214800_v2.0.a1
pyrus_communis pycom06g21580 pycom11g19070
rosa_chinensis RchiOBHm_Chr5g0040181
rosa_laevigata RLG00000033963
rosa_roxburghii Rroxscaffold_1G00041100
rosa_rugosa Rorug05G0183900
rosa_samantha Rh5BG274100 Rh5CG307000 Rh5DG282300
rosa_wichuraiana Rw5G025290 Rw5G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 287, 399
AciI CCGC 5 cut(s) 222, 287, 397, 399, 602
AclWI GGATC 1 cut(s) 458
AcoI YGGCCR 1 cut(s) 262
AcsI RAATTY 3 cut(s) 665, 866, 1033
AfaI GTAC 2 cut(s) 187, 659
AfiI CCNNNNNNNGG 2 cut(s) 289, 447
AgeI ACCGGT 1 cut(s) 691
AjuI GAANNNNNNNTTGG 6 cut(s) 94, 126, 458, 490, 681, 713
AloI GAACNNNNNNTCC 2 cut(s) 761, 793
AluBI AGCT 5 cut(s) 54, 157, 214, 964, 1097
AluI AGCT 5 cut(s) 54, 157, 214, 964, 1097
Alw21I GWGCWC 2 cut(s) 159, 966
Alw26I GTCTC 4 cut(s) 34, 110, 272, 407
AlwI GGATC 1 cut(s) 458
AoxI GGCC 4 cut(s) 262, 530, 565, 594
ApeKI GCWGC 2 cut(s) 224, 968
ApoI RAATTY 3 cut(s) 665, 866, 1033
AsiGI ACCGGT 1 cut(s) 691
Asp700I GAANNNNTTC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 292
AsuC2I CCSGG 1 cut(s) 448
AsuHPI GGTGA 5 cut(s) 190, 335, 379, 691, 711
AsuII TTCGAA 1 cut(s) 235
AvaII GGWCC 1 cut(s) 292
BaeGI GKGCMC 1 cut(s) 342
BanII GRGCYC 3 cut(s) 159, 244, 966
BbsI GAAGAC 1 cut(s) 1028
Bbv12I GWGCWC 2 cut(s) 159, 966
BbvCI CCTCAGC 1 cut(s) 1098
BbvI GCAGC 2 cut(s) 211, 980
BccI CCATC 1 cut(s) 734
BclI TGATCA 1 cut(s) 489
BcnI CCSGG 1 cut(s) 448
BcoDI GTCTC 4 cut(s) 34, 110, 272, 407
BfaI CTAG 1 cut(s) 51
BisI GCNGC 3 cut(s) 222, 225, 969
BlsI GCNGC 3 cut(s) 223, 226, 970
Bme1390I CCNGG 1 cut(s) 448
Bme18I GGWCC 1 cut(s) 292
BmgT120I GGNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 448
BmsI GCATC 3 cut(s) 751, 886, 894
BoxI GACNNNNGTC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 1028
BpmI CTGGAG 1 cut(s) 1113
Bpu10I CCTNAGC 2 cut(s) 591, 1098
Bpu14I TTCGAA 1 cut(s) 235
BpuMI CCSGG 1 cut(s) 448
BsaI GGTCTC 3 cut(s) 34, 272, 407
BsaJI CCNNGG 2 cut(s) 397, 722
BsaWI WCCGGW 1 cut(s) 691
BsaXI ACNNNNNCTCC 2 cut(s) 761, 791
Bsc4I CCNNNNNNNGG 2 cut(s) 289, 447
Bse118I RCCGGY 2 cut(s) 691, 856
Bse1I ACTGG 1 cut(s) 957
Bse3DI GCAATG 3 cut(s) 597, 771, 938
BseDI CCNNGG 2 cut(s) 397, 722
BseGI GGATG 3 cut(s) 484, 610, 778
BseLI CCNNNNNNNGG 2 cut(s) 289, 447
BseMI GCAATG 3 cut(s) 597, 771, 938
BseMII CTCAG 3 cut(s) 605, 800, 1089
BseNI ACTGG 1 cut(s) 957
BseRI GAGGAG 1 cut(s) 647
BseSI GKGCMC 1 cut(s) 342
BseXI GCAGC 2 cut(s) 211, 980
Bsh1236I CGCG 2 cut(s) 287, 399
Bsh1285I CGRYCG 2 cut(s) 397, 999
BshFI GGCC 4 cut(s) 264, 532, 567, 596
BshTI ACCGGT 1 cut(s) 691
BsiEI CGRYCG 2 cut(s) 397, 999
BsiHKAI GWGCWC 2 cut(s) 159, 966
BsiSI CCGG 3 cut(s) 448, 692, 857
BslI CCNNNNNNNGG 2 cut(s) 289, 447
BsmAI GTCTC 4 cut(s) 34, 110, 272, 407
BsmI GAATGC 1 cut(s) 985
BsnI GGCC 4 cut(s) 264, 532, 567, 596
Bso31I GGTCTC 3 cut(s) 34, 272, 407
Bsp119I TTCGAA 1 cut(s) 235
Bsp1286I GDGCHC 4 cut(s) 159, 244, 342, 966
Bsp143I GATC 2 cut(s) 450, 489
BspACI CCGC 5 cut(s) 222, 287, 397, 399, 602
BspANI GGCC 4 cut(s) 264, 532, 567, 596
BspCNI CTCAG 3 cut(s) 604, 801, 1090
BspFNI CGCG 2 cut(s) 287, 399
BspPI GGATC 1 cut(s) 458
BspQI GCTCTTC 1 cut(s) 232
BspT104I TTCGAA 1 cut(s) 235
BspTNI GGTCTC 3 cut(s) 34, 272, 407
BsrDI GCAATG 3 cut(s) 597, 771, 938
BsrFI RCCGGY 2 cut(s) 691, 856
BsrI ACTGG 1 cut(s) 957
BssAI RCCGGY 2 cut(s) 691, 856
BssECI CCNNGG 2 cut(s) 397, 722
BssMI GATC 2 cut(s) 450, 489
Bst4CI ACNGT 3 cut(s) 143, 487, 923
Bst6I CTCTTC 1 cut(s) 232
BstBI TTCGAA 1 cut(s) 235
BstC8I GCNNGC 1 cut(s) 966
BstDEI CTNAG 4 cut(s) 424, 591, 809, 1098
BstDSI CCRYGG 1 cut(s) 397
BstENI CCTNNNNNAGG 1 cut(s) 287
BstF5I GGATG 3 cut(s) 484, 610, 778
BstFNI CGCG 2 cut(s) 287, 399
BstKTI GATC 2 cut(s) 453, 492
BstMAI GTCTC 4 cut(s) 34, 110, 272, 407
BstMBI GATC 2 cut(s) 450, 489
BstMCI CGRYCG 2 cut(s) 397, 999
BstMWI GCNNNNNNNGC 2 cut(s) 163, 248
BstPAI GACNNNNGTC 1 cut(s) 399
BstSCI CCNGG 1 cut(s) 446
BstSLI GKGCMC 1 cut(s) 342
BstUI CGCG 2 cut(s) 287, 399
BstV1I GCAGC 2 cut(s) 211, 980
BstV2I GAAGAC 1 cut(s) 1028
BsuRI GGCC 4 cut(s) 264, 532, 567, 596
BtgI CCRYGG 1 cut(s) 397
BtsCI GGATG 3 cut(s) 484, 610, 778
BtsIMutI CAGTG 4 cut(s) 139, 483, 499, 964
Cac8I GCNNGC 1 cut(s) 966
Cfr10I RCCGGY 2 cut(s) 691, 856
Cfr13I GGNCC 1 cut(s) 292
Cfr42I CCGCGG 1 cut(s) 400
Csp6I GTAC 2 cut(s) 186, 658
CspAI ACCGGT 1 cut(s) 691
CviAII CATG 4 cut(s) 22, 96, 208, 901
CviQI GTAC 2 cut(s) 186, 658
DdeI CTNAG 4 cut(s) 424, 591, 809, 1098
DpnI GATC 2 cut(s) 452, 491
DpnII GATC 2 cut(s) 450, 489
EaeI YGGCCR 1 cut(s) 262
Eam1104I CTCTTC 1 cut(s) 232
EarI CTCTTC 1 cut(s) 232
Ecl136II GAGCTC 2 cut(s) 157, 964
Eco147I AGGCCT 1 cut(s) 532
Eco24I GRGCYC 3 cut(s) 159, 244, 966
Eco31I GGTCTC 3 cut(s) 34, 272, 407
Eco47I GGWCC 1 cut(s) 292
Eco53kI GAGCTC 2 cut(s) 157, 964
EcoICRI GAGCTC 2 cut(s) 157, 964
EcoNI CCTNNNNNAGG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 292
EcoT38I GRGCYC 3 cut(s) 159, 244, 966
FaeI CATG 4 cut(s) 25, 99, 211, 904
FalI AAGNNNNNCTT 6 cut(s) 360, 392, 497, 529, 636, 668
FatI CATG 4 cut(s) 21, 95, 207, 900
FbaI TGATCA 1 cut(s) 489
Fnu4HI GCNGC 3 cut(s) 222, 225, 969
FokI GGATG 3 cut(s) 491, 617, 785
FriOI GRGCYC 3 cut(s) 159, 244, 966
Fsp4HI GCNGC 3 cut(s) 222, 225, 969
FspBI CTAG 1 cut(s) 51
GluI GCNGC 3 cut(s) 222, 225, 969
GsuI CTGGAG 1 cut(s) 1113
HaeIII GGCC 4 cut(s) 264, 532, 567, 596
HapII CCGG 3 cut(s) 448, 692, 857
Hin1II CATG 4 cut(s) 25, 99, 211, 904
HinfI GANTC 3 cut(s) 173, 947, 1024
HpaII CCGG 3 cut(s) 448, 692, 857
HphI GGTGA 5 cut(s) 190, 335, 379, 691, 711
Hpy166II GTNNAC 1 cut(s) 1049
Hpy188I TCNGA 3 cut(s) 161, 888, 927
Hpy188III TCNNGA 1 cut(s) 1046
Hpy8I GTNNAC 1 cut(s) 1049
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 3 cut(s) 51, 554, 839
HpyCH4III ACNGT 3 cut(s) 143, 487, 923
HpyCH4IV ACGT 1 cut(s) 1051
HpyCH4V TGCA 5 cut(s) 35, 575, 764, 943, 1007
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 248
HpyF3I CTNAG 4 cut(s) 424, 591, 809, 1098
HpySE526I ACGT 1 cut(s) 1051
Hsp92II CATG 4 cut(s) 25, 99, 211, 904
Ksp22I TGATCA 1 cut(s) 489
KspI CCGCGG 1 cut(s) 400
Kzo9I GATC 2 cut(s) 450, 489
LguI GCTCTTC 1 cut(s) 232
LmnI GCTCC 2 cut(s) 162, 1094
Lsp1109I GCAGC 2 cut(s) 211, 980
LweI GCATC 3 cut(s) 751, 886, 894
MaeI CTAG 1 cut(s) 51
MaeII ACGT 1 cut(s) 1051
MaeIII GTNAC 3 cut(s) 481, 509, 717
MalI GATC 2 cut(s) 452, 491
MboI GATC 2 cut(s) 450, 489
MboII GAAGA 6 cut(s) 111, 249, 475, 844, 1030, 1033
MhlI GDGCHC 4 cut(s) 159, 244, 342, 966
MluCI AATT 8 cut(s) 13, 168, 458, 537, 665, 751, 866, 1033
MlyI GAGTC 1 cut(s) 1018
MroXI GAANNNNTTC 1 cut(s) 172
MseI TTAA 1 cut(s) 522
MslI CAYNNNNRTG 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 224, 399
MspI CCGG 3 cut(s) 448, 692, 857
MspR9I CCNGG 1 cut(s) 448
Mva1269I GAATGC 1 cut(s) 985
MvnI CGCG 2 cut(s) 287, 399
MwoI GCNNNNNNNGC 2 cut(s) 163, 248
NciI CCSGG 1 cut(s) 448
NdeII GATC 2 cut(s) 450, 489
NlaIII CATG 4 cut(s) 25, 99, 211, 904
NmeAIII GCCGAG 1 cut(s) 301
NmuCI GTSAC 2 cut(s) 481, 717
NspV TTCGAA 1 cut(s) 235
PceI AGGCCT 1 cut(s) 532
PciSI GCTCTTC 1 cut(s) 232
PctI GAATGC 1 cut(s) 985
PdmI GAANNNNTTC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 173, 947
PflFI GACNNNGTC 1 cut(s) 7
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 3 cut(s) 223, 226, 970
PleI GAGTC 1 cut(s) 1018
PpsI GAGTC 1 cut(s) 1018
PpuMI RGGWCCY 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 399
Psp124BI GAGCTC 2 cut(s) 159, 966
Psp5II RGGWCCY 1 cut(s) 292
PspPI GGNCC 1 cut(s) 292
PspPPI RGGWCCY 1 cut(s) 292
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 2 cut(s) 187, 659
RsaNI GTAC 2 cut(s) 186, 658
RseI CAYNNNNRTG 1 cut(s) 335
SacI GAGCTC 2 cut(s) 159, 966
SacII CCGCGG 1 cut(s) 400
SapI GCTCTTC 1 cut(s) 232
SaqAI TTAA 1 cut(s) 522
SatI GCNGC 3 cut(s) 222, 225, 969
Sau3AI GATC 2 cut(s) 450, 489
Sau96I GGNCC 1 cut(s) 292
SchI GAGTC 1 cut(s) 1018
ScrFI CCNGG 1 cut(s) 448
SduI GDGCHC 4 cut(s) 159, 244, 342, 966
SfaNI GCATC 3 cut(s) 751, 886, 894
Sfr303I CCGCGG 1 cut(s) 400
SfuI TTCGAA 1 cut(s) 235
SgrBI CCGCGG 1 cut(s) 400
SinI GGWCC 1 cut(s) 292
SmiMI CAYNNNNRTG 1 cut(s) 335
Sse9I AATT 8 cut(s) 13, 168, 458, 537, 665, 751, 866, 1033
SseBI AGGCCT 1 cut(s) 532
SsiI CCGC 5 cut(s) 222, 287, 397, 399, 602
SspMI CTAG 1 cut(s) 51
SstI GAGCTC 2 cut(s) 159, 966
StuI AGGCCT 1 cut(s) 532
StyD4I CCNGG 1 cut(s) 446
TaaI ACNGT 3 cut(s) 143, 487, 923
TaiI ACGT 1 cut(s) 1054
TaqI TCGA 1 cut(s) 235
TaqII GACCGA 1 cut(s) 1013
TasI AATT 8 cut(s) 13, 168, 458, 537, 665, 751, 866, 1033
TatI WGTACW 1 cut(s) 657
TauI GCSGC 1 cut(s) 224
TfiI GAWTC 2 cut(s) 173, 947
Tru1I TTAA 1 cut(s) 522
Tru9I TTAA 1 cut(s) 522
TscAI CASTG 4 cut(s) 146, 490, 499, 964
TseFI GTSAC 2 cut(s) 481, 717
TseI GCWGC 2 cut(s) 224, 968
Tsp45I GTSAC 2 cut(s) 481, 717
TspDTI ATGAA 3 cut(s) 33, 224, 992
TspRI CASTG 4 cut(s) 146, 490, 499, 964
Tth111I GACNNNGTC 1 cut(s) 7
VpaK11BI GGWCC 1 cut(s) 292
XagI CCTNNNNNAGG 1 cut(s) 287
XapI RAATTY 3 cut(s) 665, 866, 1033
XmnI GAANNNNTTC 1 cut(s) 172
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.