MD11G1216600.v1.1

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0015013
Physical Location & Seq
Reverse (-)
31604909 .. 31606021
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1216600.v1.1.491

Sequence Viewer

Length: 1113 bp
ATGGCGATATCCAATTCAATCATGTGGGTATCTGCAAAACCCCTATTTTCCAACACATTTCTCCAAAACCCTAAACCCCTTTTGCCCCAAATCTCACCCCAACCTCTCTGTTCTCGATCTTCAGCAACCCGCTGCGGTCTGCGTAAGCTCCGAGTGCGAATCGATTCCATAAAAAATACCCAGAAAATCACCGAAGCCATGAAGCTCGTGGCGGCTGCCAGGGTTCGAAGGGGCCAGGAAGCAGTCATCAATGGCCGACCCTTTGCTGAGACGCTTGTGGAGGTCCTGTACGACATCAATGAGCGGCTTCAGTGTGAAGACATTGACGTCCCTCTCACAAATATTAGACCCGTCAGGAAAGTTGCCATTGTCGTCATCACAGCCGACCGAGGCCTCTGCGGCGGCTTCAACAACTCCGTGGTCAAAAAGACCGAGGCCCGAATCACGGAATTGAAGAAACTTGGGTTGGATTTCACTTTGATCAGTGTTGGCAAAAAGGGTAACTCGTATTTCATGCGTAGGCCTGAGATTTGTGTTGATAGGTTTATTGAAGGTGGGTTGTTTGCAACAACGAAAGAGGCTCAGGTCATTGCTGATGACGTTTTTTCGCTGTTTGTTAGCGAAGAGGTTGATAAAGTTGAGCTTGTGTACACTAAATTTGTGTCGTTGGTGAAATCTGAACCGGTTATTCATACATTGCTTCCATTGTTGCCAAGGGGAGAGGTTGTTGATGTGAATGGGAATAGTGTCGATGCAACGGAGGATGATTTCTTTAGGTTGACAACTAAAAAAGGCAAACTGAGTATGGAGAGGGGGAGTGTGAAGATAAAGAGGGAAGGGCTTTCGCCGGTTATGGAATTCGAACAGGACCCTGTTCAGATTCTTGATGCCATGATGCCTCTCTACTTGAACAGCCAGATTCTGAAGGCACTACAGGAATCAACAGCAAGTGAGCTCGCAGCAAGAATGAATGCTATGAGTAATGCCACTGACAATGCAGTTGACTTGACGAAGTCTCTTTCAAATGTTTACAACCGGCAACGACAGGGAAAGATTACAGGGGAGATATTGGAGATTGTTGCTGGAGCCGAGGCACTAAAGGAGTTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

371

Amino Acids

41.11

Weight (kDa)

8.68

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 47 - 366 8.6e-89 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15700
fragaria_vesca FvH4_3g22880
malus_domestica MD06G1240800.v1.1 MD11G1216600.v1.1
prunus_persica Prupe.4G214800_v2.0.a1
pyrus_communis pycom06g21580 pycom11g19070
rosa_chinensis RchiOBHm_Chr5g0040181
rosa_laevigata RLG00000033963
rosa_roxburghii Rroxscaffold_1G00041100
rosa_rugosa Rorug05G0183900
rosa_samantha Rh5BG274100 Rh5CG307000 Rh5DG282300
rosa_wichuraiana Rw5G025290 Rw5G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 326
AatII GACGTC 1 cut(s) 330
AccBSI CCGCTC 1 cut(s) 304
AciI CCGC 6 cut(s) 130, 135, 212, 304, 399, 402
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 2 cut(s) 656, 857
AcuI CTGAAG 3 cut(s) 105, 293, 944
AcyI GRCGYC 1 cut(s) 327
AfaI GTAC 2 cut(s) 290, 650
AfiI CCNNNNNNNGG 1 cut(s) 445
AgeI ACCGGT 1 cut(s) 682
AgsI TTSAA 6 cut(s) 18, 409, 454, 551, 910, 1023
AjnI CCWGG 2 cut(s) 218, 234
AjuI GAANNNNNNNTTGG 2 cut(s) 449, 481
AluBI AGCT 4 cut(s) 148, 205, 643, 955
AluI AGCT 4 cut(s) 148, 205, 643, 955
Alw21I GWGCWC 1 cut(s) 957
Alw26I GTCTC 2 cut(s) 263, 1020
AlwNI CAGNNNCTG 1 cut(s) 922
AoxI GGCC 5 cut(s) 232, 253, 391, 435, 521
ApeKI GCWGC 3 cut(s) 132, 215, 959
ApoI RAATTY 2 cut(s) 656, 857
AsiGI ACCGGT 1 cut(s) 682
Asp700I GAANNNNTTC 1 cut(s) 163
AspS9I GGNCC 4 cut(s) 232, 283, 436, 868
AsuHPI GGTGA 3 cut(s) 87, 181, 682
AsuII TTCGAA 2 cut(s) 226, 861
AvaII GGWCC 2 cut(s) 283, 868
BanII GRGCYC 1 cut(s) 957
BauI CACGAG 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 324
Bbv12I GWGCWC 1 cut(s) 957
BbvI GCAGC 3 cut(s) 119, 202, 971
BcgI CGANNNNNNTGC 2 cut(s) 378, 412
BciT130I CCWGG 2 cut(s) 220, 236
BclI TGATCA 1 cut(s) 480
BcoDI GTCTC 2 cut(s) 263, 1020
BfmI CTRYAG 1 cut(s) 932
BglI GCCNNNNNGGC 1 cut(s) 399
BisI GCNGC 7 cut(s) 133, 213, 216, 305, 400, 403, 960
BlsI GCNGC 7 cut(s) 134, 214, 217, 306, 401, 404, 961
Bme1390I CCNGG 2 cut(s) 220, 236
Bme18I GGWCC 2 cut(s) 283, 868
BmgT120I GGNCC 4 cut(s) 232, 283, 436, 868
BmiI GGNNCC 3 cut(s) 233, 870, 1087
BmrFI CCNGG 2 cut(s) 220, 236
BmsI GCATC 3 cut(s) 742, 877, 885
BpiI GAAGAC 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 1104
Bpu10I CCTNAGC 1 cut(s) 582
Bpu14I TTCGAA 2 cut(s) 226, 861
Bsa29I ATCGAT 1 cut(s) 162
BsaHI GRCGYC 1 cut(s) 327
BsaJI CCNNGG 6 cut(s) 219, 388, 417, 432, 713, 1089
BsaWI WCCGGW 1 cut(s) 682
BsaXI ACNNNNNCTCC 5 cut(s) 272, 302, 711, 741, 1094
Bsc4I CCNNNNNNNGG 1 cut(s) 445
Bse118I RCCGGY 3 cut(s) 682, 847, 1035
Bse3DI GCAATG 2 cut(s) 588, 695
BseBI CCWGG 2 cut(s) 220, 236
BseCI ATCGAT 1 cut(s) 162
BseDI CCNNGG 6 cut(s) 219, 388, 417, 432, 713, 1089
BseGI GGATG 1 cut(s) 769
BseLI CCNNNNNNNGG 1 cut(s) 445
BseMI GCAATG 2 cut(s) 588, 695
BseMII CTCAG 4 cut(s) 258, 516, 596, 791
BseXI GCAGC 3 cut(s) 119, 202, 971
Bsh1285I CGRYCG 1 cut(s) 388
BshFI GGCC 5 cut(s) 234, 255, 393, 437, 523
BshTI ACCGGT 1 cut(s) 682
BshVI ATCGAT 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 388
BsiHKAI GWGCWC 1 cut(s) 957
BsiSI CCGG 3 cut(s) 683, 848, 1036
BslFI GGGAC 1 cut(s) 314
BslI CCNNNNNNNGG 1 cut(s) 445
BsmAI GTCTC 2 cut(s) 263, 1020
BsmBI CGTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 314
BsmI GAATGC 1 cut(s) 976
BsnI GGCC 5 cut(s) 234, 255, 393, 437, 523
Bsp119I TTCGAA 2 cut(s) 226, 861
Bsp1286I GDGCHC 1 cut(s) 957
Bsp1407I TGTACA 1 cut(s) 648
Bsp143I GATC 2 cut(s) 116, 480
BspACI CCGC 6 cut(s) 130, 135, 212, 304, 399, 402
BspANI GGCC 5 cut(s) 234, 255, 393, 437, 523
BspCNI CTCAG 4 cut(s) 259, 517, 595, 792
BspDI ATCGAT 1 cut(s) 162
BspLI GGNNCC 3 cut(s) 233, 870, 1087
BspT104I TTCGAA 2 cut(s) 226, 861
BsrBI CCGCTC 1 cut(s) 304
BsrDI GCAATG 2 cut(s) 588, 695
BsrFI RCCGGY 3 cut(s) 682, 847, 1035
BsrGI TGTACA 1 cut(s) 648
BssAI RCCGGY 3 cut(s) 682, 847, 1035
BssECI CCNNGG 6 cut(s) 219, 388, 417, 432, 713, 1089
BssMI GATC 2 cut(s) 116, 480
BssNI GRCGYC 1 cut(s) 327
BssSI CACGAG 1 cut(s) 206
BssT1I CCWWGG 1 cut(s) 713
Bst2BI CACGAG 1 cut(s) 206
Bst2UI CCWGG 2 cut(s) 220, 236
Bst6I CTCTTC 1 cut(s) 618
BstACI GRCGYC 1 cut(s) 327
BstAUI TGTACA 1 cut(s) 648
BstBI TTCGAA 2 cut(s) 226, 861
BstC8I GCNNGC 1 cut(s) 957
BstDEI CTNAG 4 cut(s) 267, 525, 582, 800
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 769
BstKTI GATC 2 cut(s) 119, 483
BstMAI GTCTC 2 cut(s) 263, 1020
BstMBI GATC 2 cut(s) 116, 480
BstMCI CGRYCG 1 cut(s) 388
BstMWI GCNNNNNNNGC 2 cut(s) 154, 399
BstNI CCWGG 2 cut(s) 220, 236
BstSCI CCNGG 2 cut(s) 218, 234
BstSFI CTRYAG 1 cut(s) 932
BstV1I GCAGC 3 cut(s) 119, 202, 971
BstV2I GAAGAC 1 cut(s) 324
Bsu15I ATCGAT 1 cut(s) 162
BsuRI GGCC 5 cut(s) 234, 255, 393, 437, 523
BsuTUI ATCGAT 1 cut(s) 162
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 769
BtsIMutI CAGTG 3 cut(s) 317, 490, 987
Cac8I GCNNGC 1 cut(s) 957
CaiI CAGNNNCTG 1 cut(s) 922
Cfr10I RCCGGY 3 cut(s) 682, 847, 1035
Cfr13I GGNCC 4 cut(s) 232, 283, 436, 868
ClaI ATCGAT 1 cut(s) 162
CseI GACGC 1 cut(s) 280
Csp6I GTAC 2 cut(s) 289, 649
CspAI ACCGGT 1 cut(s) 682
CviAII CATG 4 cut(s) 22, 199, 514, 892
CviQI GTAC 2 cut(s) 289, 649
DdeI CTNAG 4 cut(s) 267, 525, 582, 800
DpnI GATC 2 cut(s) 118, 482
DpnII GATC 2 cut(s) 116, 480
DrdI GACNNNNNNGTC 1 cut(s) 326
DseDI GACNNNNNNGTC 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 253
Eam1104I CTCTTC 1 cut(s) 618
EarI CTCTTC 1 cut(s) 618
Ecl136II GAGCTC 1 cut(s) 955
Eco130I CCWWGG 1 cut(s) 713
Eco147I AGGCCT 2 cut(s) 393, 523
Eco24I GRGCYC 1 cut(s) 957
Eco32I GATATC 1 cut(s) 9
Eco47I GGWCC 2 cut(s) 283, 868
Eco53kI GAGCTC 1 cut(s) 955
Eco57I CTGAAG 3 cut(s) 105, 293, 944
EcoICRI GAGCTC 1 cut(s) 955
EcoO109I RGGNCCY 2 cut(s) 283, 868
EcoRI GAATTC 1 cut(s) 857
EcoRII CCWGG 2 cut(s) 218, 234
EcoRV GATATC 1 cut(s) 9
EcoT14I CCWWGG 1 cut(s) 713
EcoT38I GRGCYC 1 cut(s) 957
ErhI CCWWGG 1 cut(s) 713
Esp3I CGTCTC 1 cut(s) 263
FaeI CATG 4 cut(s) 25, 202, 517, 895
FaiI YATR 9 cut(s) 23, 170, 200, 515, 693, 806, 854, 893, 977
FalI AAGNNNNNCTT 2 cut(s) 627, 659
FaqI GGGAC 1 cut(s) 314
FatI CATG 4 cut(s) 21, 198, 513, 891
FauI CCCGC 1 cut(s) 137
FbaI TGATCA 1 cut(s) 480
Fnu4HI GCNGC 7 cut(s) 133, 213, 216, 305, 400, 403, 960
FokI GGATG 1 cut(s) 776
FriOI GRGCYC 1 cut(s) 957
Fsp4HI GCNGC 7 cut(s) 133, 213, 216, 305, 400, 403, 960
GluI GCNGC 7 cut(s) 133, 213, 216, 305, 400, 403, 960
GsuI CTGGAG 1 cut(s) 1104
HaeIII GGCC 5 cut(s) 234, 255, 393, 437, 523
HapII CCGG 3 cut(s) 683, 848, 1036
HgaI GACGC 1 cut(s) 280
Hin1I GRCGYC 1 cut(s) 327
Hin1II CATG 4 cut(s) 25, 202, 517, 895
HincII GTYRAC 2 cut(s) 780, 1003
HindII GTYRAC 2 cut(s) 780, 1003
HinfI GANTC 6 cut(s) 159, 164, 441, 880, 919, 938
HpaII CCGG 3 cut(s) 683, 848, 1036
HphI GGTGA 3 cut(s) 87, 181, 682
Hpy166II GTNNAC 5 cut(s) 649, 651, 780, 1003, 1030
Hpy188I TCNGA 4 cut(s) 152, 679, 879, 924
Hpy188III TCNNGA 3 cut(s) 114, 355, 884
Hpy8I GTNNAC 5 cut(s) 649, 651, 780, 1003, 1030
HpyAV CCTTC 4 cut(s) 222, 545, 830, 919
HpyCH4IV ACGT 2 cut(s) 327, 600
HpyCH4V TGCA 4 cut(s) 35, 566, 755, 998
HpyF10VI GCNNNNNNNGC 2 cut(s) 154, 399
HpyF3I CTNAG 4 cut(s) 267, 525, 582, 800
HpySE526I ACGT 2 cut(s) 327, 600
Hsp92I GRCGYC 1 cut(s) 327
Hsp92II CATG 4 cut(s) 25, 202, 517, 895
Ksp22I TGATCA 1 cut(s) 480
Kzo9I GATC 2 cut(s) 116, 480
LmnI GCTCC 2 cut(s) 153, 1085
Lsp1109I GCAGC 3 cut(s) 119, 202, 971
LweI GCATC 3 cut(s) 742, 877, 885
MaeII ACGT 2 cut(s) 327, 600
MaeIII GTNAC 1 cut(s) 500
MalI GATC 2 cut(s) 118, 482
MbiI CCGCTC 1 cut(s) 304
MboI GATC 2 cut(s) 116, 480
MboII GAAGA 5 cut(s) 111, 329, 466, 635, 835
MhlI GDGCHC 1 cut(s) 957
MluCI AATT 4 cut(s) 13, 449, 656, 857
MmeI TCCRAC 2 cut(s) 75, 447
MroXI GAANNNNTTC 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 132
MspI CCGG 3 cut(s) 683, 848, 1036
MspR9I CCNGG 2 cut(s) 220, 236
Mva1269I GAATGC 1 cut(s) 976
MvaI CCWGG 2 cut(s) 220, 236
MwoI GCNNNNNNNGC 2 cut(s) 154, 399
NdeII GATC 2 cut(s) 116, 480
NlaIII CATG 4 cut(s) 25, 202, 517, 895
NlaIV GGNNCC 3 cut(s) 233, 870, 1087
NspV TTCGAA 2 cut(s) 226, 861
PceI AGGCCT 2 cut(s) 393, 523
PctI GAATGC 1 cut(s) 976
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 6 cut(s) 159, 164, 441, 880, 919, 938
PflFI GACNNNGTC 1 cut(s) 1012
PinAI ACCGGT 1 cut(s) 682
PkrI GCNGC 7 cut(s) 134, 214, 217, 306, 401, 404, 961
PpuMI RGGWCCY 2 cut(s) 283, 868
Psp124BI GAGCTC 1 cut(s) 957
Psp5II RGGWCCY 2 cut(s) 283, 868
Psp6I CCWGG 2 cut(s) 218, 234
PspGI CCWGG 2 cut(s) 218, 234
PspN4I GGNNCC 3 cut(s) 233, 870, 1087
PspPI GGNCC 4 cut(s) 232, 283, 436, 868
PspPPI RGGWCCY 2 cut(s) 283, 868
PstNI CAGNNNCTG 1 cut(s) 922
PsyI GACNNNGTC 1 cut(s) 1012
RsaI GTAC 2 cut(s) 290, 650
RsaNI GTAC 2 cut(s) 289, 649
SacI GAGCTC 1 cut(s) 957
SatI GCNGC 7 cut(s) 133, 213, 216, 305, 400, 403, 960
Sau3AI GATC 2 cut(s) 116, 480
Sau96I GGNCC 4 cut(s) 232, 283, 436, 868
ScrFI CCNGG 2 cut(s) 220, 236
SduI GDGCHC 1 cut(s) 957
SfaNI GCATC 3 cut(s) 742, 877, 885
SfcI CTRYAG 1 cut(s) 932
SfuI TTCGAA 2 cut(s) 226, 861
SinI GGWCC 2 cut(s) 283, 868
Sse9I AATT 4 cut(s) 13, 449, 656, 857
SseBI AGGCCT 2 cut(s) 393, 523
SsiI CCGC 6 cut(s) 130, 135, 212, 304, 399, 402
SspI AATATT 1 cut(s) 343
SstI GAGCTC 1 cut(s) 957
StuI AGGCCT 2 cut(s) 393, 523
StyD4I CCNGG 2 cut(s) 218, 234
StyI CCWWGG 1 cut(s) 713
TaiI ACGT 2 cut(s) 330, 603
TaqI TCGA 5 cut(s) 115, 162, 226, 750, 861
TaqII GACCGA 2 cut(s) 402, 446
TasI AATT 4 cut(s) 13, 449, 656, 857
TatI WGTACW 1 cut(s) 648
TauI GCSGC 4 cut(s) 215, 307, 402, 405
TfiI GAWTC 6 cut(s) 159, 164, 441, 880, 919, 938
TscAI CASTG 3 cut(s) 317, 490, 994
TseI GCWGC 3 cut(s) 132, 215, 959
TspDTI ATGAA 4 cut(s) 215, 502, 680, 983
TspGWI ACGGA 3 cut(s) 406, 461, 773
TspRI CASTG 3 cut(s) 317, 490, 994
Tth111I GACNNNGTC 1 cut(s) 1012
VpaK11BI GGWCC 2 cut(s) 283, 868
XapI RAATTY 2 cut(s) 656, 857
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
XmnI GAANNNNTTC 1 cut(s) 163
ZraI GACGTC 1 cut(s) 328
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.