Rh5BG274100

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
OG0015013
Physical Location & Seq
Forward (+)
34544998 .. 34546089
1092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG274100.1

Sequence Viewer

Length: 1092 bp
ATGGCTTTATCCATGTGGGTCTCTTTAAAACCTTCATTTCTGCAAAACCCAAATCCTCTTTCGCCCCAAATCTCAAGCCCAACTCGTCACTCCCCATCAGCAATCCGCTGTGGTCTGCGTGAGCTCCGAGAGCGAATTGATTCCATTAAGAGCACCCAGAAAATCACAGAGGCCATGAAGCTCGTAGCGGCTGCCAGGGTTCGAAGAGCGCAAGAAGCAGTCATCGATGGCCGACCCTTCTCCGAGACCCTTGTGGAGGTCTTATACGACATCAATGAACAGCTTCAAGGTGAAGACGTTGATATCCCTCTGACGAATGTTAGACCTGTCAAGAAAGTAGCCCTTGTGGTCATTACTAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAGACCCGAATTGTGGAGTTGAGGAAATTTGGATTGGAGGTGGTTCTGATCAGCGTTGGGAAGAAGGGTAACTCGTATTTTATGCGTAGGCCGGAGATTAAGGTGGATAGGTTGATGGAAGGAGGGGCGTTTCCGACGGCGAAAGAGGCTCAGGTGATTGCTGATGATGTGTTTTCCCTGTTTGTGAGCGAGGAGGTTGATAAGGTTGAGCTTGTGTACACCAAGTTCGTGTCGTTGGTGAAGTCCGAGCCGGTGATTCATACATTGCTTCCACTGTCACCTAGGGGTGAGGTTGTTGATGTGAATGGGAATTGTGTTGATGCAATGGGGGATGAGTTGTTTAGGCTGACTAGTAAGGAAGGGAAGCTGGCATTGAAGAGGGACAGTGTGAAGAAGAAAGAGAGAAAAGAAATGTCGCCGCTTATGGAATTTGAACAAGACCCTGTTCAGATTCTTGATGCCATGATGCCTCTCTACTTGAACAGTCAGATTCTGAGGGCATTGCAGGAGTCAACAGCAAGTGAGCTTGCGGCGAGAATGAATGCTATGAGTAATGCCACGGATAATGCAGTTGAGTTGAAGAAGACTCTGTCGAGATCTTATAATCGAGCACGACAGGCAAAGGTTACTGGGGAGTTATTGGAGATTGTTGCTGGAGCTGAGGCACTAAGAGAGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

363

Amino Acids

40.36

Weight (kDa)

8.6

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 39 - 359 1.4e-93 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15700
fragaria_vesca FvH4_3g22880
malus_domestica MD06G1240800.v1.1 MD11G1216600.v1.1
prunus_persica Prupe.4G214800_v2.0.a1
pyrus_communis pycom06g21580 pycom11g19070
rosa_chinensis RchiOBHm_Chr5g0040181
rosa_laevigata RLG00000033963
rosa_roxburghii Rroxscaffold_1G00041100
rosa_rugosa Rorug05G0183900
rosa_samantha Rh5BG274100 Rh5CG307000 Rh5DG282300
rosa_wichuraiana Rw5G025290 Rw5G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1011
AciI CCGC 4 cut(s) 106, 188, 827, 938
AcoI YGGCCR 1 cut(s) 229
AcsI RAATTY 2 cut(s) 434, 836
AfaI GTAC 1 cut(s) 626
AfiI CCNNNNNNNGG 2 cut(s) 256, 421
AgsI TTSAA 6 cut(s) 287, 385, 784, 842, 889, 988
AhlI ACTAGT 2 cut(s) 356, 758
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 4 cut(s) 43, 75, 425, 457
AluBI AGCT 7 cut(s) 124, 181, 283, 619, 775, 934, 1067
AluI AGCT 7 cut(s) 124, 181, 283, 619, 775, 934, 1067
Alw21I GWGCWC 3 cut(s) 126, 155, 1021
Alw26I GTCTC 2 cut(s) 25, 239
AlwNI CAGNNNCTG 1 cut(s) 901
AoxI GGCC 3 cut(s) 171, 229, 497
ApeKI GCWGC 1 cut(s) 191
ApoI RAATTY 2 cut(s) 434, 836
Asp700I GAANNNNTTC 2 cut(s) 139, 282
AspA2I CCTAGG 1 cut(s) 689
AspLEI GCGC 2 cut(s) 211, 409
AsuHPI GGTGA 6 cut(s) 302, 574, 658, 673, 678, 707
AsuII TTCGAA 1 cut(s) 202
AvrII CCTAGG 1 cut(s) 689
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 2 cut(s) 300, 998
Bbv12I GWGCWC 3 cut(s) 126, 155, 1021
BbvCI CCTCAGC 1 cut(s) 1068
BbvI GCAGC 1 cut(s) 178
BccI CCATC 3 cut(s) 103, 221, 517
BceAI ACGGC 1 cut(s) 561
BciT130I CCWGG 1 cut(s) 196
BclI TGATCA 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 25, 239
BcuI ACTAGT 2 cut(s) 356, 758
BfaI CTAG 3 cut(s) 357, 690, 759
BglII AGATCT 1 cut(s) 1004
BisI GCNGC 4 cut(s) 189, 192, 827, 939
BlnI CCTAGG 1 cut(s) 689
BlsI GCNGC 4 cut(s) 190, 193, 828, 940
Bme1390I CCNGG 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 196
BmrI ACTGGG 1 cut(s) 1047
BmsI GCATC 3 cut(s) 718, 856, 864
BmuI ACTGGG 1 cut(s) 1047
BpiI GAAGAC 2 cut(s) 300, 998
BpmI CTGGAG 1 cut(s) 1083
Bpu10I CCTNAGC 2 cut(s) 558, 1068
Bpu14I TTCGAA 1 cut(s) 202
BpuEI CTTGAG 1 cut(s) 58
Bsa29I ATCGAT 1 cut(s) 225
BsaI GGTCTC 2 cut(s) 25, 239
BsaJI CCNNGG 3 cut(s) 195, 689, 966
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 421
Bse118I RCCGGY 1 cut(s) 658
Bse1I ACTGG 1 cut(s) 1042
Bse3DI GCAATG 3 cut(s) 671, 738, 908
BseBI CCWGG 1 cut(s) 196
BseCI ATCGAT 1 cut(s) 225
BseDI CCNNGG 3 cut(s) 195, 689, 966
BseGI GGATG 1 cut(s) 745
BseLI CCNNNNNNNGG 2 cut(s) 256, 421
BseMI GCAATG 3 cut(s) 671, 738, 908
BseMII CTCAG 4 cut(s) 572, 893, 1059, 1077
BseNI ACTGG 1 cut(s) 1042
BseRI GAGGAG 1 cut(s) 614
BseXI GCAGC 1 cut(s) 178
BshFI GGCC 3 cut(s) 173, 231, 499
BshVI ATCGAT 1 cut(s) 225
BsiHKAI GWGCWC 3 cut(s) 126, 155, 1021
BsiSI CCGG 2 cut(s) 500, 659
BslFI GGGAC 1 cut(s) 803
BslI CCNNNNNNNGG 2 cut(s) 256, 421
BsmAI GTCTC 2 cut(s) 25, 239
BsmFI GGGAC 1 cut(s) 803
BsmI GAATGC 1 cut(s) 955
BsnI GGCC 3 cut(s) 173, 231, 499
Bso31I GGTCTC 2 cut(s) 25, 239
Bsp119I TTCGAA 1 cut(s) 202
Bsp1286I GDGCHC 3 cut(s) 126, 155, 1021
Bsp1407I TGTACA 1 cut(s) 624
Bsp143I GATC 2 cut(s) 456, 1004
BspACI CCGC 4 cut(s) 106, 188, 827, 938
BspANI GGCC 3 cut(s) 173, 231, 499
BspCNI CTCAG 4 cut(s) 571, 894, 1060, 1078
BspDI ATCGAT 1 cut(s) 225
BspQI GCTCTTC 1 cut(s) 199
BspT104I TTCGAA 1 cut(s) 202
BspTNI GGTCTC 2 cut(s) 25, 239
BsrDI GCAATG 3 cut(s) 671, 738, 908
BsrFI RCCGGY 1 cut(s) 658
BsrGI TGTACA 1 cut(s) 624
BsrI ACTGG 1 cut(s) 1042
BssAI RCCGGY 1 cut(s) 658
BssECI CCNNGG 3 cut(s) 195, 689, 966
BssMI GATC 2 cut(s) 456, 1004
BssT1I CCWWGG 1 cut(s) 689
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 3 cut(s) 684, 794, 893
Bst6I CTCTTC 2 cut(s) 199, 779
BstAUI TGTACA 1 cut(s) 624
BstBI TTCGAA 1 cut(s) 202
BstC8I GCNNGC 2 cut(s) 777, 936
BstDEI CTNAG 6 cut(s) 399, 558, 902, 1068, 1076, 1086
BstDSI CCRYGG 1 cut(s) 966
BstENI CCTNNNNNAGG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 745
BstHHI GCGC 2 cut(s) 211, 409
BstKTI GATC 2 cut(s) 459, 1007
BstMAI GTCTC 2 cut(s) 25, 239
BstMBI GATC 2 cut(s) 456, 1004
BstMWI GCNNNNNNNGC 4 cut(s) 130, 215, 554, 1025
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstV1I GCAGC 1 cut(s) 178
BstV2I GAAGAC 2 cut(s) 300, 998
BstX2I RGATCY 1 cut(s) 1004
BstYI RGATCY 1 cut(s) 1004
Bsu15I ATCGAT 1 cut(s) 225
BsuRI GGCC 3 cut(s) 173, 231, 499
BsuTUI ATCGAT 1 cut(s) 225
BtgI CCRYGG 1 cut(s) 966
BtsCI GGATG 1 cut(s) 745
BtsIMutI CAGTG 2 cut(s) 680, 799
Cac8I GCNNGC 2 cut(s) 777, 936
CaiI CAGNNNCTG 1 cut(s) 901
CfoI GCGC 2 cut(s) 211, 409
Cfr10I RCCGGY 1 cut(s) 658
ClaI ATCGAT 1 cut(s) 225
Csp6I GTAC 1 cut(s) 625
CviAII CATG 3 cut(s) 13, 175, 871
CviQI GTAC 1 cut(s) 625
DdeI CTNAG 6 cut(s) 399, 558, 902, 1068, 1076, 1086
DpnI GATC 2 cut(s) 458, 1006
DpnII GATC 2 cut(s) 456, 1004
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 199, 779
EarI CTCTTC 2 cut(s) 199, 779
Ecl136II GAGCTC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 689
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 2 cut(s) 25, 239
Eco32I GATATC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 124
EcoICRI GAGCTC 1 cut(s) 124
EcoNI CCTNNNNNAGG 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 194
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 689
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 689
FaeI CATG 3 cut(s) 16, 178, 874
FaiI YATR 9 cut(s) 14, 176, 265, 491, 669, 833, 872, 956, 1011
FalI AAGNNNNNCTT 2 cut(s) 327, 359
FaqI GGGAC 1 cut(s) 803
FatI CATG 3 cut(s) 12, 174, 870
FbaI TGATCA 1 cut(s) 456
Fnu4HI GCNGC 4 cut(s) 189, 192, 827, 939
FokI GGATG 1 cut(s) 752
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 4 cut(s) 189, 192, 827, 939
FspBI CTAG 3 cut(s) 357, 690, 759
GlaI GCGC 2 cut(s) 210, 408
GluI GCNGC 4 cut(s) 189, 192, 827, 939
GsuI CTGGAG 1 cut(s) 1083
HaeIII GGCC 3 cut(s) 173, 231, 499
HapII CCGG 2 cut(s) 500, 659
HhaI GCGC 2 cut(s) 211, 409
Hin1II CATG 3 cut(s) 16, 178, 874
Hin6I GCGC 2 cut(s) 209, 407
HinP1I GCGC 2 cut(s) 209, 407
HincII GTYRAC 1 cut(s) 921
HindII GTYRAC 1 cut(s) 921
HinfI GANTC 7 cut(s) 140, 664, 859, 898, 917, 994, 1082
HpaII CCGG 2 cut(s) 500, 659
HphI GGTGA 6 cut(s) 302, 574, 658, 673, 678, 707
Hpy166II GTNNAC 3 cut(s) 625, 627, 921
Hpy188III TCNNGA 3 cut(s) 331, 863, 1002
Hpy8I GTNNAC 3 cut(s) 625, 627, 921
Hpy99I CGWCG 1 cut(s) 547
HpyAV CCTTC 5 cut(s) 42, 247, 466, 521, 761
HpyCH4III ACNGT 3 cut(s) 684, 794, 893
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 5 cut(s) 43, 392, 731, 913, 977
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 215, 554, 1025
HpyF3I CTNAG 6 cut(s) 399, 558, 902, 1068, 1076, 1086
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 3 cut(s) 16, 178, 874
HspAI GCGC 2 cut(s) 209, 407
Ksp22I TGATCA 1 cut(s) 456
Kzo9I GATC 2 cut(s) 456, 1004
LguI GCTCTTC 1 cut(s) 199
LmnI GCTCC 2 cut(s) 129, 1064
Lsp1109I GCAGC 1 cut(s) 178
LweI GCATC 3 cut(s) 718, 856, 864
MaeI CTAG 3 cut(s) 357, 690, 759
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 4 cut(s) 86, 476, 684, 1033
MalI GATC 2 cut(s) 458, 1006
MboI GATC 2 cut(s) 456, 1004
MboII GAAGA 8 cut(s) 216, 305, 481, 796, 811, 814, 1000, 1003
MflI RGATCY 1 cut(s) 1004
MhlI GDGCHC 3 cut(s) 126, 155, 1021
MluCI AATT 5 cut(s) 135, 417, 434, 718, 836
MlyI GAGTC 3 cut(s) 926, 988, 1091
MmeI TCCRAC 1 cut(s) 566
Mph1103I ATGCAT 1 cut(s) 394
MroXI GAANNNNTTC 2 cut(s) 139, 282
MseI TTAA 3 cut(s) 26, 147, 507
MspA1I CMGCKG 1 cut(s) 108
MspI CCGG 2 cut(s) 500, 659
MspR9I CCNGG 1 cut(s) 196
Mva1269I GAATGC 1 cut(s) 955
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 4 cut(s) 130, 215, 554, 1025
NdeII GATC 2 cut(s) 456, 1004
NlaIII CATG 3 cut(s) 16, 178, 874
NmuCI GTSAC 2 cut(s) 86, 684
NsiI ATGCAT 1 cut(s) 394
NspV TTCGAA 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 199
PctI GAATGC 1 cut(s) 955
PdmI GAANNNNTTC 2 cut(s) 139, 282
PfeI GAWTC 4 cut(s) 140, 664, 859, 898
PflFI GACNNNGTC 1 cut(s) 997
PkrI GCNGC 4 cut(s) 190, 193, 828, 940
PleI GAGTC 3 cut(s) 925, 988, 1090
PpsI GAGTC 3 cut(s) 925, 988, 1090
PsiI TTATAA 1 cut(s) 1011
Psp124BI GAGCTC 1 cut(s) 126
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PsrI GAACNNNNNNTAC 2 cut(s) 617, 649
PstNI CAGNNNCTG 1 cut(s) 901
PsuI RGATCY 1 cut(s) 1004
PsyI GACNNNGTC 1 cut(s) 997
RsaI GTAC 1 cut(s) 626
RsaNI GTAC 1 cut(s) 625
SacI GAGCTC 1 cut(s) 126
SapI GCTCTTC 1 cut(s) 199
SaqAI TTAA 3 cut(s) 26, 147, 507
SatI GCNGC 4 cut(s) 189, 192, 827, 939
Sau3AI GATC 2 cut(s) 456, 1004
SchI GAGTC 3 cut(s) 926, 988, 1091
ScrFI CCNGG 1 cut(s) 196
SduI GDGCHC 3 cut(s) 126, 155, 1021
SfaNI GCATC 3 cut(s) 718, 856, 864
SfuI TTCGAA 1 cut(s) 202
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
SpeI ACTAGT 2 cut(s) 356, 758
Sse9I AATT 5 cut(s) 135, 417, 434, 718, 836
SsiI CCGC 4 cut(s) 106, 188, 827, 938
SspMI CTAG 3 cut(s) 357, 690, 759
SstI GAGCTC 1 cut(s) 126
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 689
TaaI ACNGT 3 cut(s) 684, 794, 893
TaiI ACGT 1 cut(s) 300
TaqI TCGA 4 cut(s) 202, 225, 1001, 1015
TasI AATT 5 cut(s) 135, 417, 434, 718, 836
TatI WGTACW 1 cut(s) 624
TauI GCSGC 3 cut(s) 191, 829, 941
TfiI GAWTC 4 cut(s) 140, 664, 859, 898
Tru1I TTAA 3 cut(s) 26, 147, 507
Tru9I TTAA 3 cut(s) 26, 147, 507
TscAI CASTG 2 cut(s) 687, 799
TseFI GTSAC 2 cut(s) 86, 684
TseI GCWGC 1 cut(s) 191
Tsp45I GTSAC 2 cut(s) 86, 684
TspDTI ATGAA 5 cut(s) 24, 191, 291, 656, 962
TspGWI ACGGA 1 cut(s) 983
TspRI CASTG 2 cut(s) 687, 799
Tth111I GACNNNGTC 1 cut(s) 997
XagI CCTNNNNNAGG 1 cut(s) 254
XapI RAATTY 2 cut(s) 434, 836
XmaJI CCTAGG 1 cut(s) 689
XmnI GAANNNNTTC 2 cut(s) 139, 282
XspI CTAG 3 cut(s) 357, 690, 759
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.