RchiOBHm_Chr5g0040181

ATP synthase gamma chain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0015013
Physical Location & Seq
Forward (+)
34896329 .. 34897796
1468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31870

Sequence Viewer

Length: 1104 bp
ATGGCTTTATCCATGTGGGTCTCTTTAAAACCTTCATTTCTGCAAAACCCAAATCCTCTTTCGCCCCAAATCTCACGCCCAACTCGTCACTCCCAATCTTCACGAACCCCAGCAATCCGCTGTGGTCTGCGTGAGCTCCGAGAGCGAATTGATTCCATTAAGAGCACCCAGAAAATCACAGAGGCCATGAAGCTCGTAGCGGCTGCCAGGGTTCGAAGAGCTCAAGAAGCAGTCATCGATGGCCGACCCTTCTCCGAGACCCTTGTGGAGGTTCTATGCGACATCAATGAGCAGCTTCAAGGTGAAGACGTTGATATCCCTCTCACTAATGTTAGACCTGTCAAGAAAGTAGCCCTTGTGGTCATTACTAGTGATAGAGGTCTGTGTGGTGGTTTCAACAATGCATTGACTAAGAAAGCGCAGACCCGAATTGTGGAGTTGAGGAAATTTGGATTGGAGGTGGTTCTGATCAGCGTTGGGAAGAAGGGTAACTCGTATTTTACGCGTAGGCCGGAGATTAAGGTGGATAGGTTGATGGAAGGAGGGGCGTTTCCGACGGTGAAAGAGGCTCAGGTGATTGCTGATGATGTGTTTTCCCTGTTTGTTGGCGAGGAGGTTGATAAGGTTGAGCTTGTGTACACTAAATTCGTGTCGTTGGTGAAGTCCGAGCCGGTGATTCATACATTGCTTCCATTGTCACCTAGGGGTGAGGTTGTTGATGTGAATGGGAATTGTGTTGATGCAATGGGGGATGAGTTGTTTAGGCTGACTAGTAAGGAAGGGAAGCTGGCATTGAAGAGGGACAGTGATAAGAAGAAAGAGAGAAAAGAAATGTCGCCGCTTATGGAATTTGAACAAGACCCTGTTCAGATTCTTGATGCCATGATGCCTCTCTACTTGAACAGTCAGATTCTGAGGGCATTGCAGGAGTCAACAGCAAGTGAGCTTGCGGCGAGAATGAATGCTATGAGTAATGCCACGGATAATGCAGTTGAGTTGAAGAAGACTCTATCGAGATCTTATAATCGAGCACGACAGGCAAAGGTTACTGGGGAGTTATTGGAGATTGTTGCTGGAGCTGAGGCACTAAGAGAGTCTGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009544 GO:0009579 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0022603 GO:0030234 GO:0031976 GO:0031984 GO:0032991 GO:0034220 GO:0034357 GO:0034641 GO:0034654 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046034 GO:0046390 GO:0046483 GO:0050789 GO:0050790 GO:0050793 GO:0051179 GO:0051234 GO:0051239 GO:0055035 GO:0055085 GO:0055086 GO:0065007 GO:0065009 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098772 GO:0098796 GO:0098807 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600 GO:1905421 GO:2000026 GO:2000067 GO:2000280
KEGG Pathways
Metabolic & Signaling
ko00190 ko00195 ko01100 map00190 map00195 map01100
Pfam Domains
Protein Families
ATP-synt

Protein Analysis

367

Amino Acids

40.82

Weight (kDa)

8.74

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt PF00231 43 - 363 1.9e-93 ATP synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015013)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G15700
fragaria_vesca FvH4_3g22880
malus_domestica MD06G1240800.v1.1 MD11G1216600.v1.1
prunus_persica Prupe.4G214800_v2.0.a1
pyrus_communis pycom06g21580 pycom11g19070
rosa_chinensis RchiOBHm_Chr5g0040181
rosa_laevigata RLG00000033963
rosa_roxburghii Rroxscaffold_1G00041100
rosa_rugosa Rorug05G0183900
rosa_samantha Rh5BG274100 Rh5CG307000 Rh5DG282300
rosa_wichuraiana Rw5G025290 Rw5G025310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1023
AccII CGCG 1 cut(s) 505
AciI CCGC 4 cut(s) 118, 200, 839, 950
AcoI YGGCCR 1 cut(s) 241
AcsI RAATTY 3 cut(s) 446, 644, 848
AfaI GTAC 1 cut(s) 638
AfiI CCNNNNNNNGG 2 cut(s) 268, 433
AflIII ACRYGT 1 cut(s) 503
AgsI TTSAA 6 cut(s) 299, 397, 796, 854, 901, 1000
AhlI ACTAGT 2 cut(s) 368, 770
AjnI CCWGG 1 cut(s) 206
AjuI GAANNNNNNNTTGG 4 cut(s) 43, 75, 437, 469
AluBI AGCT 8 cut(s) 136, 193, 221, 295, 631, 787, 946, 1079
AluI AGCT 8 cut(s) 136, 193, 221, 295, 631, 787, 946, 1079
Alw21I GWGCWC 4 cut(s) 138, 167, 223, 1033
Alw26I GTCTC 2 cut(s) 25, 251
AlwNI CAGNNNCTG 1 cut(s) 913
AoxI GGCC 3 cut(s) 183, 241, 509
ApeKI GCWGC 2 cut(s) 203, 292
ApoI RAATTY 3 cut(s) 446, 644, 848
Asp700I GAANNNNTTC 1 cut(s) 151
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 421
AsuHPI GGTGA 7 cut(s) 314, 571, 586, 670, 685, 690, 719
AsuII TTCGAA 1 cut(s) 214
AvrII CCTAGG 1 cut(s) 701
BanII GRGCYC 2 cut(s) 138, 223
BbsI GAAGAC 2 cut(s) 312, 1010
Bbv12I GWGCWC 4 cut(s) 138, 167, 223, 1033
BbvCI CCTCAGC 1 cut(s) 1080
BbvI GCAGC 2 cut(s) 190, 304
BccI CCATC 2 cut(s) 233, 529
BciT130I CCWGG 1 cut(s) 208
BclI TGATCA 1 cut(s) 468
BcoDI GTCTC 2 cut(s) 25, 251
BcuI ACTAGT 2 cut(s) 368, 770
BfaI CTAG 3 cut(s) 369, 702, 771
BglII AGATCT 1 cut(s) 1016
BisI GCNGC 5 cut(s) 201, 204, 293, 839, 951
BlnI CCTAGG 1 cut(s) 701
BlsI GCNGC 5 cut(s) 202, 205, 294, 840, 952
Bme1390I CCNGG 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 208
BmrI ACTGGG 1 cut(s) 1059
BmsI GCATC 3 cut(s) 730, 868, 876
BmuI ACTGGG 1 cut(s) 1059
BpiI GAAGAC 2 cut(s) 312, 1010
BpmI CTGGAG 1 cut(s) 1095
Bpu10I CCTNAGC 2 cut(s) 570, 1080
Bpu14I TTCGAA 1 cut(s) 214
BpuEI CTTGAG 1 cut(s) 207
Bsa29I ATCGAT 1 cut(s) 237
BsaI GGTCTC 2 cut(s) 25, 251
BsaJI CCNNGG 3 cut(s) 207, 701, 978
Bsc4I CCNNNNNNNGG 2 cut(s) 268, 433
Bse118I RCCGGY 1 cut(s) 670
Bse1I ACTGG 1 cut(s) 1054
Bse3DI GCAATG 3 cut(s) 683, 750, 920
BseBI CCWGG 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 237
BseDI CCNNGG 3 cut(s) 207, 701, 978
BseGI GGATG 1 cut(s) 757
BseLI CCNNNNNNNGG 2 cut(s) 268, 433
BseMI GCAATG 3 cut(s) 683, 750, 920
BseMII CTCAG 4 cut(s) 584, 905, 1071, 1089
BseNI ACTGG 1 cut(s) 1054
BseRI GAGGAG 1 cut(s) 626
BseXI GCAGC 2 cut(s) 190, 304
BseYI CCCAGC 1 cut(s) 109
Bsh1236I CGCG 1 cut(s) 505
BshFI GGCC 3 cut(s) 185, 243, 511
BshVI ATCGAT 1 cut(s) 237
BsiHKAI GWGCWC 4 cut(s) 138, 167, 223, 1033
BsiSI CCGG 2 cut(s) 512, 671
BslFI GGGAC 1 cut(s) 815
BslI CCNNNNNNNGG 2 cut(s) 268, 433
BsmAI GTCTC 2 cut(s) 25, 251
BsmFI GGGAC 1 cut(s) 815
BsmI GAATGC 1 cut(s) 967
BsnI GGCC 3 cut(s) 185, 243, 511
Bso31I GGTCTC 2 cut(s) 25, 251
Bsp119I TTCGAA 1 cut(s) 214
Bsp1286I GDGCHC 4 cut(s) 138, 167, 223, 1033
Bsp1407I TGTACA 1 cut(s) 636
Bsp143I GATC 2 cut(s) 468, 1016
BspACI CCGC 4 cut(s) 118, 200, 839, 950
BspANI GGCC 3 cut(s) 185, 243, 511
BspCNI CTCAG 4 cut(s) 583, 906, 1072, 1090
BspDI ATCGAT 1 cut(s) 237
BspFNI CGCG 1 cut(s) 505
BspQI GCTCTTC 1 cut(s) 211
BspT104I TTCGAA 1 cut(s) 214
BspTNI GGTCTC 2 cut(s) 25, 251
BsrDI GCAATG 3 cut(s) 683, 750, 920
BsrFI RCCGGY 1 cut(s) 670
BsrGI TGTACA 1 cut(s) 636
BsrI ACTGG 1 cut(s) 1054
BssAI RCCGGY 1 cut(s) 670
BssECI CCNNGG 3 cut(s) 207, 701, 978
BssMI GATC 2 cut(s) 468, 1016
BssT1I CCWWGG 1 cut(s) 701
Bst2UI CCWGG 1 cut(s) 208
Bst4CI ACNGT 3 cut(s) 559, 806, 905
Bst6I CTCTTC 2 cut(s) 211, 791
BstAUI TGTACA 1 cut(s) 636
BstBI TTCGAA 1 cut(s) 214
BstC8I GCNNGC 2 cut(s) 789, 948
BstDEI CTNAG 6 cut(s) 411, 570, 914, 1080, 1088, 1098
BstDSI CCRYGG 1 cut(s) 978
BstENI CCTNNNNNAGG 1 cut(s) 266
BstF5I GGATG 1 cut(s) 757
BstFNI CGCG 1 cut(s) 505
BstHHI GCGC 1 cut(s) 421
BstKTI GATC 2 cut(s) 471, 1019
BstMAI GTCTC 2 cut(s) 25, 251
BstMBI GATC 2 cut(s) 468, 1016
BstMWI GCNNNNNNNGC 3 cut(s) 142, 227, 1037
BstNI CCWGG 1 cut(s) 208
BstSCI CCNGG 1 cut(s) 206
BstUI CGCG 1 cut(s) 505
BstV1I GCAGC 2 cut(s) 190, 304
BstV2I GAAGAC 2 cut(s) 312, 1010
BstX2I RGATCY 1 cut(s) 1016
BstYI RGATCY 1 cut(s) 1016
Bsu15I ATCGAT 1 cut(s) 237
BsuRI GGCC 3 cut(s) 185, 243, 511
BsuTUI ATCGAT 1 cut(s) 237
BtgI CCRYGG 1 cut(s) 978
BtsCI GGATG 1 cut(s) 757
BtsIMutI CAGTG 1 cut(s) 811
Cac8I GCNNGC 2 cut(s) 789, 948
CaiI CAGNNNCTG 1 cut(s) 913
CfoI GCGC 1 cut(s) 421
Cfr10I RCCGGY 1 cut(s) 670
ClaI ATCGAT 1 cut(s) 237
Csp6I GTAC 1 cut(s) 637
CviAII CATG 3 cut(s) 13, 187, 883
CviQI GTAC 1 cut(s) 637
DdeI CTNAG 6 cut(s) 411, 570, 914, 1080, 1088, 1098
DpnI GATC 2 cut(s) 470, 1018
DpnII GATC 2 cut(s) 468, 1016
DraI TTTAAA 1 cut(s) 27
EaeI YGGCCR 1 cut(s) 241
Eam1104I CTCTTC 2 cut(s) 211, 791
EarI CTCTTC 2 cut(s) 211, 791
Ecl136II GAGCTC 2 cut(s) 136, 221
Eco130I CCWWGG 1 cut(s) 701
Eco24I GRGCYC 2 cut(s) 138, 223
Eco31I GGTCTC 2 cut(s) 25, 251
Eco32I GATATC 1 cut(s) 316
Eco53kI GAGCTC 2 cut(s) 136, 221
EcoICRI GAGCTC 2 cut(s) 136, 221
EcoNI CCTNNNNNAGG 1 cut(s) 266
EcoRII CCWGG 1 cut(s) 206
EcoRV GATATC 1 cut(s) 316
EcoT14I CCWWGG 1 cut(s) 701
EcoT22I ATGCAT 1 cut(s) 406
EcoT38I GRGCYC 2 cut(s) 138, 223
ErhI CCWWGG 1 cut(s) 701
FaeI CATG 3 cut(s) 16, 190, 886
FaiI YATR 8 cut(s) 14, 188, 277, 681, 845, 884, 968, 1023
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 815
FatI CATG 3 cut(s) 12, 186, 882
FbaI TGATCA 1 cut(s) 468
Fnu4HI GCNGC 5 cut(s) 201, 204, 293, 839, 951
FokI GGATG 1 cut(s) 764
FriOI GRGCYC 2 cut(s) 138, 223
Fsp4HI GCNGC 5 cut(s) 201, 204, 293, 839, 951
FspBI CTAG 3 cut(s) 369, 702, 771
GlaI GCGC 1 cut(s) 420
GluI GCNGC 5 cut(s) 201, 204, 293, 839, 951
GsaI CCCAGC 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 1095
HaeIII GGCC 3 cut(s) 185, 243, 511
HapII CCGG 2 cut(s) 512, 671
HhaI GCGC 1 cut(s) 421
Hin1II CATG 3 cut(s) 16, 190, 886
Hin6I GCGC 1 cut(s) 419
HinP1I GCGC 1 cut(s) 419
HincII GTYRAC 1 cut(s) 933
HindII GTYRAC 1 cut(s) 933
HinfI GANTC 7 cut(s) 152, 676, 871, 910, 929, 1006, 1094
HpaII CCGG 2 cut(s) 512, 671
HphI GGTGA 7 cut(s) 314, 571, 586, 670, 685, 690, 719
Hpy166II GTNNAC 3 cut(s) 637, 639, 933
Hpy188I TCNGA 9 cut(s) 140, 256, 468, 555, 667, 870, 909, 915, 1099
Hpy188III TCNNGA 5 cut(s) 102, 224, 343, 875, 1014
Hpy8I GTNNAC 3 cut(s) 637, 639, 933
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 5 cut(s) 42, 259, 478, 533, 773
HpyCH4III ACNGT 3 cut(s) 559, 806, 905
HpyCH4IV ACGT 1 cut(s) 309
HpyCH4V TGCA 5 cut(s) 43, 404, 743, 925, 989
HpyF10VI GCNNNNNNNGC 3 cut(s) 142, 227, 1037
HpyF3I CTNAG 6 cut(s) 411, 570, 914, 1080, 1088, 1098
HpySE526I ACGT 1 cut(s) 309
Hsp92II CATG 3 cut(s) 16, 190, 886
HspAI GCGC 1 cut(s) 419
Ksp22I TGATCA 1 cut(s) 468
Kzo9I GATC 2 cut(s) 468, 1016
LguI GCTCTTC 1 cut(s) 211
LmnI GCTCC 2 cut(s) 141, 1076
Lsp1109I GCAGC 2 cut(s) 190, 304
LweI GCATC 3 cut(s) 730, 868, 876
MaeI CTAG 3 cut(s) 369, 702, 771
MaeII ACGT 1 cut(s) 309
MaeIII GTNAC 4 cut(s) 86, 488, 696, 1045
MalI GATC 2 cut(s) 470, 1018
MboI GATC 2 cut(s) 468, 1016
MboII GAAGA 8 cut(s) 90, 228, 317, 493, 808, 826, 1012, 1015
MflI RGATCY 1 cut(s) 1016
MhlI GDGCHC 4 cut(s) 138, 167, 223, 1033
MluCI AATT 6 cut(s) 147, 429, 446, 644, 730, 848
MluI ACGCGT 1 cut(s) 503
MlyI GAGTC 3 cut(s) 938, 1000, 1103
MmeI TCCRAC 1 cut(s) 578
Mph1103I ATGCAT 1 cut(s) 406
MroXI GAANNNNTTC 1 cut(s) 151
MseI TTAA 3 cut(s) 26, 159, 519
MspA1I CMGCKG 1 cut(s) 120
MspI CCGG 2 cut(s) 512, 671
MspR9I CCNGG 1 cut(s) 208
Mva1269I GAATGC 1 cut(s) 967
MvaI CCWGG 1 cut(s) 208
MvnI CGCG 1 cut(s) 505
MwoI GCNNNNNNNGC 3 cut(s) 142, 227, 1037
NdeII GATC 2 cut(s) 468, 1016
NlaIII CATG 3 cut(s) 16, 190, 886
NmuCI GTSAC 2 cut(s) 86, 696
NsiI ATGCAT 1 cut(s) 406
NspV TTCGAA 1 cut(s) 214
PciSI GCTCTTC 1 cut(s) 211
PcsI WCGNNNNNNNCGW 1 cut(s) 82
PctI GAATGC 1 cut(s) 967
PdmI GAANNNNTTC 1 cut(s) 151
PfeI GAWTC 4 cut(s) 152, 676, 871, 910
PkrI GCNGC 5 cut(s) 202, 205, 294, 840, 952
PleI GAGTC 3 cut(s) 937, 1000, 1102
PpsI GAGTC 3 cut(s) 937, 1000, 1102
PsiI TTATAA 1 cut(s) 1023
Psp124BI GAGCTC 2 cut(s) 138, 223
Psp6I CCWGG 1 cut(s) 206
PspFI CCCAGC 1 cut(s) 109
PspGI CCWGG 1 cut(s) 206
PstNI CAGNNNCTG 1 cut(s) 913
PsuI RGATCY 1 cut(s) 1016
RsaI GTAC 1 cut(s) 638
RsaNI GTAC 1 cut(s) 637
SacI GAGCTC 2 cut(s) 138, 223
SapI GCTCTTC 1 cut(s) 211
SaqAI TTAA 3 cut(s) 26, 159, 519
SatI GCNGC 5 cut(s) 201, 204, 293, 839, 951
Sau3AI GATC 2 cut(s) 468, 1016
SchI GAGTC 3 cut(s) 938, 1000, 1103
ScrFI CCNGG 1 cut(s) 208
SduI GDGCHC 4 cut(s) 138, 167, 223, 1033
SfaNI GCATC 3 cut(s) 730, 868, 876
SfuI TTCGAA 1 cut(s) 214
SmlI CTYRAG 1 cut(s) 222
SmoI CTYRAG 1 cut(s) 222
SpeI ACTAGT 2 cut(s) 368, 770
Sse9I AATT 6 cut(s) 147, 429, 446, 644, 730, 848
SsiI CCGC 4 cut(s) 118, 200, 839, 950
SspMI CTAG 3 cut(s) 369, 702, 771
SstI GAGCTC 2 cut(s) 138, 223
StyD4I CCNGG 1 cut(s) 206
StyI CCWWGG 1 cut(s) 701
TaaI ACNGT 3 cut(s) 559, 806, 905
TaiI ACGT 1 cut(s) 312
TaqI TCGA 4 cut(s) 214, 237, 1013, 1027
TasI AATT 6 cut(s) 147, 429, 446, 644, 730, 848
TatI WGTACW 1 cut(s) 636
TauI GCSGC 3 cut(s) 203, 841, 953
TfiI GAWTC 4 cut(s) 152, 676, 871, 910
Tru1I TTAA 3 cut(s) 26, 159, 519
Tru9I TTAA 3 cut(s) 26, 159, 519
TscAI CASTG 1 cut(s) 811
TseFI GTSAC 2 cut(s) 86, 696
TseI GCWGC 2 cut(s) 203, 292
Tsp45I GTSAC 2 cut(s) 86, 696
TspDTI ATGAA 4 cut(s) 24, 203, 668, 974
TspGWI ACGGA 1 cut(s) 995
TspRI CASTG 1 cut(s) 811
XagI CCTNNNNNAGG 1 cut(s) 266
XapI RAATTY 3 cut(s) 446, 644, 848
XmaJI CCTAGG 1 cut(s) 701
XmnI GAANNNNTTC 1 cut(s) 151
XspI CTAG 3 cut(s) 369, 702, 771
Zsp2I ATGCAT 1 cut(s) 406
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.