FvH4_3g24120

receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006873
Physical Location & Seq
Forward (+)
17132163 .. 17132833
671 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g24120.t1

Sequence Viewer

Length: 363 bp
ATGGCCAGATCACAGAACCTTAATGATGGAACAGTCAAAGTTCATTCTTCCATTGCCTTGTTGCAGGAGAGATTTAAGCAACTGCAGAGAGCTAAGGAGATGAGGGAGGAGAGAGAGCTCTTGAGGCAGCTCATAGCCGAATCTGCGGAGAGGGCTAATCAAACTCATCAAGCCGCCGCACATTTTGAGCCGAAGGAGTTGGTGTTTCAATCTGAAATGACAGGCTCTCAGTGTAAGCAACAACCCCAAGTCTCAATGTATCTCCAACCCAGTTACTTGCAGAGCAAGCAAAATTATCAAGCAGCCATGCGCAGACCGAGCAAACTTGATGATTCGGATGTGGATACTTCTCTTCACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_4 LRR_6 LRR_8

Protein Analysis

121

Amino Acids

13.86

Weight (kDa)

7.92

Isoelectric Point (pI)

63.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 311
AciI CCGC 3 cut(s) 146, 174, 177
AcoI YGGCCR 1 cut(s) 3
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 3 cut(s) 92, 118, 130
AluI AGCT 3 cut(s) 92, 118, 130
Alw21I GWGCWC 1 cut(s) 120
Alw26I GTCTC 1 cut(s) 256
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 127, 302
AspLEI GCGC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 347
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 139, 314
BccI CCATC 1 cut(s) 20
BciVI GTATCC 1 cut(s) 337
BcoDI GTCTC 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 83
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 4 cut(s) 128, 174, 177, 303
BlsI GCNGC 4 cut(s) 129, 175, 178, 304
BmrI ACTGGG 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 264
Bpu10I CCTNAGC 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 142
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 51
BseGI GGATG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 139, 314
BshFI GGCC 1 cut(s) 5
BsiHKAI GWGCWC 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 256
BsnI GGCC 1 cut(s) 5
Bsp1286I GDGCHC 1 cut(s) 120
Bsp143I GATC 1 cut(s) 8
BspACI CCGC 3 cut(s) 146, 174, 177
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 241
BspMAI CTGCAG 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 270
BssMI GATC 1 cut(s) 8
Bst4CI ACNGT 1 cut(s) 34
Bst6I CTCTTC 1 cut(s) 357
BstC8I GCNNGC 1 cut(s) 287
BstDEI CTNAG 2 cut(s) 93, 228
BstF5I GGATG 1 cut(s) 343
BstHHI GCGC 1 cut(s) 312
BstKTI GATC 1 cut(s) 11
BstMAI GTCTC 1 cut(s) 256
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 5 cut(s) 124, 143, 152, 286, 318
BstSFI CTRYAG 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 139, 314
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 1 cut(s) 5
BtsCI GGATG 1 cut(s) 343
BtsIMutI CAGTG 1 cut(s) 236
Cac8I GCNNGC 1 cut(s) 287
CfoI GCGC 1 cut(s) 312
CviAII CATG 1 cut(s) 307
DdeI CTNAG 2 cut(s) 93, 228
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Ecl136II GAGCTC 1 cut(s) 118
Eco24I GRGCYC 1 cut(s) 120
Eco53kI GAGCTC 1 cut(s) 118
EcoICRI GAGCTC 1 cut(s) 118
EcoT38I GRGCYC 1 cut(s) 120
FaeI CATG 1 cut(s) 310
FaiI YATR 2 cut(s) 134, 308
FatI CATG 1 cut(s) 306
Fnu4HI GCNGC 4 cut(s) 128, 174, 177, 303
FokI GGATG 1 cut(s) 350
FriOI GRGCYC 1 cut(s) 120
Fsp4HI GCNGC 4 cut(s) 128, 174, 177, 303
FspI TGCGCA 1 cut(s) 311
GlaI GCGC 1 cut(s) 311
GluI GCNGC 4 cut(s) 128, 174, 177, 303
HaeIII GGCC 1 cut(s) 5
HhaI GCGC 1 cut(s) 312
Hin1II CATG 1 cut(s) 310
Hin6I GCGC 1 cut(s) 310
HinP1I GCGC 1 cut(s) 310
HinfI GANTC 2 cut(s) 140, 332
HphI GGTGA 1 cut(s) 347
Hpy188I TCNGA 2 cut(s) 214, 337
Hpy188III TCNNGA 1 cut(s) 121
HpyAV CCTTC 1 cut(s) 187
HpyCH4III ACNGT 1 cut(s) 34
HpyCH4V TGCA 3 cut(s) 64, 85, 280
HpyF10VI GCNNNNNNNGC 5 cut(s) 124, 143, 152, 286, 318
HpyF3I CTNAG 2 cut(s) 93, 228
Hsp92II CATG 1 cut(s) 310
HspAI GCGC 1 cut(s) 310
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 4 cut(s) 19, 50, 207, 283
Lsp1109I GCAGC 2 cut(s) 139, 314
MaeIII GTNAC 1 cut(s) 272
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 2 cut(s) 39, 344
MhlI GDGCHC 1 cut(s) 120
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 292
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 1 cut(s) 289
MnlI CCTC 4 cut(s) 96, 100, 117, 144
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 21, 75
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 5 cut(s) 124, 143, 152, 286, 318
NdeII GATC 1 cut(s) 8
NlaIII CATG 1 cut(s) 310
NsbI TGCGCA 1 cut(s) 311
PfeI GAWTC 2 cut(s) 140, 332
PkrI GCNGC 4 cut(s) 129, 175, 178, 304
Psp124BI GAGCTC 1 cut(s) 120
PstI CTGCAG 1 cut(s) 87
SacI GAGCTC 1 cut(s) 120
SaqAI TTAA 2 cut(s) 21, 75
SatI GCNGC 4 cut(s) 128, 174, 177, 303
Sau3AI GATC 1 cut(s) 8
SduI GDGCHC 1 cut(s) 120
SetI ASST 5 cut(s) 21, 94, 120, 132, 360
SfcI CTRYAG 1 cut(s) 83
SmlI CTYRAG 1 cut(s) 121
SmoI CTYRAG 1 cut(s) 121
Sse9I AATT 1 cut(s) 292
SsiI CCGC 3 cut(s) 146, 174, 177
SstI GAGCTC 1 cut(s) 120
TaaI ACNGT 1 cut(s) 34
TaqII GACCGA 1 cut(s) 331
TasI AATT 1 cut(s) 292
TauI GCSGC 2 cut(s) 176, 179
TfiI GAWTC 2 cut(s) 140, 332
Tru1I TTAA 2 cut(s) 21, 75
Tru9I TTAA 2 cut(s) 21, 75
TscAI CASTG 1 cut(s) 236
TseI GCWGC 2 cut(s) 127, 302
TspDTI ATGAA 1 cut(s) 32
TspRI CASTG 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.