Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018228.1

Orthogroup ID

OG0006873

Physical Location & Seq

Genomic Coordinates Reverse (-)

5342 .. 7542

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018228.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

atgggtaggcacagctctgatccgattatggttagttcttccattgctctcttgcaagagaggttcagacagttgcagaaagtgaaggagaggagggaggagcaacagcttctgcagtttttgtccgagacagaaagggttgcaccctcaacgaggcattttgagcctgcaaggccctctttccaatccgatatggtgcttcctctcaggccgtgtactcctgcagcagactcatcactctctctggggctcaatttgcagcctaaacaagttgattattgtgtcatgaagactgcacatccattctcaacctcatcaaccacaacaagtgcttcaagaaaatatgacaattcagagcttgatacctctcttcatctagagagaagtcaccttccaccttgctgtgctccggtgacgagtggccggcgcggtctccggcgaccgatgactggaatccggaatccggctattattgccccccacgaaggtggtataccggattgtgactcagagacgaagattcatgttccggcaattcaggacctcgactcattcatgaagaacttccggcgatggaggacgatctctgatccatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

198

Amino Acids

22.29

Weight (kDa)

8.93

Isoelectric Point (pI)

74.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16447
fragaria_vesca	FvH4_3g24120 FvH4_6g41090 FvH4_6g41090
prunus_persica	Prupe.3G201300_v2.0.a1 Prupe.4G234900_v2.0.a1
pyrus_communis	pycom09g04660 pycom17g10490
rosa_chinensis	RchiOBHm_Chr2g0156651 RchiOBHm_Chr5g0042781
rosa_laevigata	RLG00000020928 RLG00000034151
rosa_multiflora	Rmu_sc0002079.1_g000001 Rmu_sc0018228.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037840 Rroxscaffold_2G00092870
rosa_rugosa	Rorug02G0455000
rosa_samantha	Rh2AG520700 Rh2BG533900 Rh2CG505700 Rh2DG542700 Rh5AG289400 Rh5BG293500 Rh5CG326100 Rh5DG303500
rosa_wichuraiana	Rw2G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	493
AccII	CGCG	1 cut(s)	429
AccIII	TCCGGA	1 cut(s)	456
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	2 cut(s)	14, 584
AcoI	YGGCCR	1 cut(s)	421
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	4 cut(s)	153, 449, 463, 485
AgsI	TTSAA	1 cut(s)	336
AleI	CACNNNNGTG	1 cut(s)	486
AluBI	AGCT	3 cut(s)	15, 109, 358
AluI	AGCT	3 cut(s)	15, 109, 358
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	3 cut(s)	122, 437, 506
AlwI	GGATC	2 cut(s)	14, 584
AlwNI	CAGNNNCTG	1 cut(s)	112
Aor13HI	TCCGGA	1 cut(s)	456
AoxI	GGCC	3 cut(s)	173, 209, 421
ApeKI	GCWGC	2 cut(s)	224, 259
Asp700I	GAANNNNTTC	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	429
AspS9I	GGNCC	2 cut(s)	174, 541
AsuHPI	GGTGA	2 cut(s)	380, 424
AvaII	GGWCC	1 cut(s)	541
BanII	GRGCYC	1 cut(s)	252
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BbsI	GAAGAC	1 cut(s)	296
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	2 cut(s)	236, 271
BccI	CCATC	1 cut(s)	567
BceAI	ACGGC	1 cut(s)	196
BcoDI	GTCTC	3 cut(s)	122, 437, 506
BfaI	CTAG	1 cut(s)	377
BfmI	CTRYAG	2 cut(s)	113, 222
BglI	GCCNNNNNGGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	225, 260
BlsI	GCNGC	2 cut(s)	226, 261
Bme18I	GGWCC	1 cut(s)	541
BmgT120I	GGNCC	2 cut(s)	174, 541
BpiI	GAAGAC	1 cut(s)	296
BsaI	GGTCTC	1 cut(s)	437
BsaWI	WCCGGW	3 cut(s)	409, 456, 496
Bsc4I	CCNNNNNNNGG	4 cut(s)	153, 449, 463, 485
Bse118I	RCCGGY	1 cut(s)	423
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	42
BseAI	TCCGGA	1 cut(s)	456
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	4 cut(s)	153, 449, 463, 485
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	2 cut(s)	220, 522
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	2 cut(s)	106, 113
BseXI	GCAGC	2 cut(s)	236, 271
BsgI	GTGCAG	1 cut(s)	279
Bsh1236I	CGCG	1 cut(s)	429
Bsh1285I	CGRYCG	1 cut(s)	443
BshFI	GGCC	3 cut(s)	175, 211, 423
BsiEI	CGRYCG	1 cut(s)	443
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	8 cut(s)	410, 424, 436, 457, 464, 497, 530, 568
BslI	CCNNNNNNNGG	4 cut(s)	153, 449, 463, 485
BsmAI	GTCTC	3 cut(s)	122, 437, 506
BsmBI	CGTCTC	1 cut(s)	506
BsnI	GGCC	3 cut(s)	175, 211, 423
Bso31I	GGTCTC	1 cut(s)	437
Bsp1286I	GDGCHC	2 cut(s)	252, 409
Bsp13I	TCCGGA	1 cut(s)	456
Bsp143I	GATC	3 cut(s)	19, 582, 589
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	3 cut(s)	175, 211, 423
BspCNI	CTCAG	2 cut(s)	219, 521
BspEI	TCCGGA	1 cut(s)	456
BspFNI	CGCG	1 cut(s)	429
BspHI	TCATGA	2 cut(s)	285, 555
BspMAI	CTGCAG	2 cut(s)	117, 226
BspPI	GGATC	2 cut(s)	14, 584
BspTNI	GGTCTC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	42
BsrFI	RCCGGY	1 cut(s)	423
BsrI	ACTGG	1 cut(s)	454
BssAI	RCCGGY	1 cut(s)	423
BssMI	GATC	3 cut(s)	19, 582, 589
BssNAI	GTATAC	1 cut(s)	494
Bst1107I	GTATAC	1 cut(s)	494
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	375
BstC8I	GCNNGC	2 cut(s)	168, 425
BstDEI	CTNAG	2 cut(s)	206, 508
BstENI	CCTNNNNNAGG	1 cut(s)	151
BstF5I	GGATG	1 cut(s)	298
BstFNI	CGCG	1 cut(s)	429
BstHHI	GCGC	1 cut(s)	429
BstKTI	GATC	3 cut(s)	22, 585, 592
BstMAI	GTCTC	3 cut(s)	122, 437, 506
BstMBI	GATC	3 cut(s)	19, 582, 589
BstMCI	CGRYCG	1 cut(s)	443
BstMWI	GCNNNNNNNGC	4 cut(s)	163, 172, 256, 473
BstSFI	CTRYAG	2 cut(s)	113, 222
BstUI	CGCG	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	236, 271
BstV2I	GAAGAC	1 cut(s)	296
BstXI	CCANNNNNNTGG	1 cut(s)	488
BstZ17I	GTATAC	1 cut(s)	494
BsuRI	GGCC	3 cut(s)	175, 211, 423
BtgZI	GCGATG	1 cut(s)	586
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	168, 425
CaiI	CAGNNNCTG	1 cut(s)	112
CciI	TCATGA	2 cut(s)	285, 555
CfoI	GCGC	1 cut(s)	429
Cfr10I	RCCGGY	1 cut(s)	423
Cfr13I	GGNCC	2 cut(s)	174, 541
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	4 cut(s)	286, 524, 556, 594
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	206, 508
DpnI	GATC	3 cut(s)	21, 584, 591
DpnII	GATC	3 cut(s)	19, 582, 589
EaeI	YGGCCR	1 cut(s)	421
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	252
Eco31I	GGTCTC	1 cut(s)	437
Eco47I	GGWCC	1 cut(s)	541
EcoNI	CCTNNNNNAGG	1 cut(s)	151
EcoO109I	RGGNCCY	2 cut(s)	174, 541
EcoT38I	GRGCYC	1 cut(s)	252
Esp3I	CGTCTC	1 cut(s)	506
FaeI	CATG	4 cut(s)	289, 527, 559, 597
FaiI	YATR	8 cut(s)	29, 194, 287, 345, 494, 525, 557, 595
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	4 cut(s)	285, 523, 555, 593
FblI	GTMKAC	1 cut(s)	493
Fnu4HI	GCNGC	2 cut(s)	225, 260
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	225, 260
FspBI	CTAG	1 cut(s)	377
GlaI	GCGC	1 cut(s)	428
GluI	GCNGC	2 cut(s)	225, 260
HaeIII	GGCC	3 cut(s)	175, 211, 423
HapII	CCGG	8 cut(s)	410, 424, 436, 457, 464, 497, 530, 568
HhaI	GCGC	1 cut(s)	429
Hin1II	CATG	4 cut(s)	289, 527, 559, 597
Hin6I	GCGC	1 cut(s)	427
HinP1I	GCGC	1 cut(s)	427
HinfI	GANTC	6 cut(s)	230, 453, 460, 506, 520, 548
HpaII	CCGG	8 cut(s)	410, 424, 436, 457, 464, 497, 530, 568
HphI	GGTGA	2 cut(s)	380, 424
Hpy166II	GTNNAC	2 cut(s)	216, 494
Hpy188I	TCNGA	8 cut(s)	19, 24, 68, 127, 190, 355, 511, 589
Hpy188III	TCNNGA	6 cut(s)	286, 336, 377, 457, 539, 556
Hpy8I	GTNNAC	2 cut(s)	216, 494
HpyAV	CCTTC	3 cut(s)	79, 401, 479
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	8 cut(s)	55, 76, 115, 143, 170, 224, 259, 296
HpyF10VI	GCNNNNNNNGC	4 cut(s)	163, 172, 256, 473
HpyF3I	CTNAG	2 cut(s)	206, 508
Hsp92II	CATG	4 cut(s)	289, 527, 559, 597
HspAI	GCGC	1 cut(s)	427
Kpn2I	TCCGGA	1 cut(s)	456
KroI	GCCGGC	1 cut(s)	423
KroNI	GCCGGC	1 cut(s)	425
Kzo9I	GATC	3 cut(s)	19, 582, 589
LmnI	GCTCC	2 cut(s)	100, 412
Lsp1109I	GCAGC	2 cut(s)	236, 271
MaeI	CTAG	1 cut(s)	377
MaeIII	GTNAC	3 cut(s)	386, 412, 503
MalI	GATC	3 cut(s)	21, 584, 591
MboI	GATC	3 cut(s)	19, 582, 589
MboII	GAAGA	5 cut(s)	30, 301, 362, 529, 571
MhlI	GDGCHC	2 cut(s)	252, 409
MluCI	AATT	3 cut(s)	253, 349, 534
MlyI	GAGTC	3 cut(s)	224, 500, 542
MroI	TCCGGA	1 cut(s)	456
MroNI	GCCGGC	1 cut(s)	423
MroXI	GAANNNNTTC	1 cut(s)	563
MslI	CAYNNNNRTG	1 cut(s)	486
MspI	CCGG	8 cut(s)	410, 424, 436, 457, 464, 497, 530, 568
MvnI	CGCG	1 cut(s)	429
MwoI	GCNNNNNNNGC	4 cut(s)	163, 172, 256, 473
NaeI	GCCGGC	1 cut(s)	425
NdeII	GATC	3 cut(s)	19, 582, 589
NgoMIV	GCCGGC	1 cut(s)	423
NlaIII	CATG	4 cut(s)	289, 527, 559, 597
NmuCI	GTSAC	3 cut(s)	386, 412, 503
OliI	CACNNNNGTG	1 cut(s)	486
PagI	TCATGA	2 cut(s)	285, 555
PdiI	GCCGGC	1 cut(s)	425
PdmI	GAANNNNTTC	1 cut(s)	563
PfeI	GAWTC	3 cut(s)	453, 460, 520
PkrI	GCNGC	2 cut(s)	226, 261
PleI	GAGTC	3 cut(s)	224, 500, 542
PpsI	GAGTC	3 cut(s)	224, 500, 542
PpuMI	RGGWCCY	1 cut(s)	541
Psp5II	RGGWCCY	1 cut(s)	541
PspPI	GGNCC	2 cut(s)	174, 541
PspPPI	RGGWCCY	1 cut(s)	541
PstI	CTGCAG	2 cut(s)	117, 226
PstNI	CAGNNNCTG	1 cut(s)	112
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
RseI	CAYNNNNRTG	1 cut(s)	486
SatI	GCNGC	2 cut(s)	225, 260
Sau3AI	GATC	3 cut(s)	19, 582, 589
Sau96I	GGNCC	2 cut(s)	174, 541
SchI	GAGTC	3 cut(s)	224, 500, 542
SduI	GDGCHC	2 cut(s)	252, 409
SfcI	CTRYAG	2 cut(s)	113, 222
SinI	GGWCC	1 cut(s)	541
SmiMI	CAYNNNNRTG	1 cut(s)	486
Sse9I	AATT	3 cut(s)	253, 349, 534
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	72
TaqI	TCGA	1 cut(s)	546
TaqII	GACCGA	1 cut(s)	457
TasI	AATT	3 cut(s)	253, 349, 534
TatI	WGTACW	1 cut(s)	215
TfiI	GAWTC	3 cut(s)	453, 460, 520
TseFI	GTSAC	3 cut(s)	386, 412, 503
TseI	GCWGC	2 cut(s)	224, 259
Tsp45I	GTSAC	3 cut(s)	386, 412, 503
TspDTI	ATGAA	5 cut(s)	302, 362, 512, 544, 572
VpaK11BI	GGWCC	1 cut(s)	541
XagI	CCTNNNNNAGG	1 cut(s)	151
XbaI	TCTAGA	1 cut(s)	376
XmiI	GTMKAC	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	563
XspI	CTAG	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.