Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0006873

Physical Location & Seq

Genomic Coordinates Reverse (-)

3444736 .. 3445497

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g04660.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTTACTTCCATTTCATTTTGGACTATTTTCTTAAAAAACCACCAAACCCTTCACCTACAAAGCTTCAGAGATCAAAAGCGCAAAAGCTGCTTTTCAATGGGCAGGCAAAGTGCTTCTGATCCAACCTTGGTTTCAGTTTCCTCCATTGCTCTACTGCAAGAAAGGTTCAGGCAGCTGCAGAAAGTGAAGGAGAGGAGGGAGGAGCAGCAGCTTCTGAAGAAGTTATCAGAGACTGATCACCAACGGGTTGTTTGTACAACAAGGCATTTTGATCATCAGCCTGCAAAGTTCTCATTCGAATCCGATATCGTCGTTCCGGTTAGGCCAAGTGCTCCTCCAGATCACTCACTCTCTCTCGGGCTTAATTTGCAGCCATATTCCACAAACTCATGGCCCAACAACACAAAAGCACCTGCTGCCGCAGCAAGTGCTTCTGCAAAAAGTTTTGACAACTCAGACCTTATTGACACCTCTCTTCATCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

163

Amino Acids

18.36

Weight (kDa)

9.47

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16447
fragaria_vesca	FvH4_3g24120 FvH4_6g41090 FvH4_6g41090
prunus_persica	Prupe.3G201300_v2.0.a1 Prupe.4G234900_v2.0.a1
pyrus_communis	pycom09g04660 pycom17g10490
rosa_chinensis	RchiOBHm_Chr2g0156651 RchiOBHm_Chr5g0042781
rosa_laevigata	RLG00000020928 RLG00000034151
rosa_multiflora	Rmu_sc0002079.1_g000001 Rmu_sc0018228.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037840 Rroxscaffold_2G00092870
rosa_rugosa	Rorug02G0455000
rosa_samantha	Rh2AG520700 Rh2BG533900 Rh2CG505700 Rh2DG542700 Rh5AG289400 Rh5BG293500 Rh5CG326100 Rh5DG303500
rosa_wichuraiana	Rw2G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	1 cut(s)	423
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	2 cut(s)	52, 239
AfaI	GTAC	1 cut(s)	259
AgsI	TTSAA	1 cut(s)	99
AjuI	GAANNNNNNNTTGG	2 cut(s)	118, 150
AluBI	AGCT	4 cut(s)	66, 90, 178, 214
AluI	AGCT	4 cut(s)	66, 90, 178, 214
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	2 cut(s)	217, 236
Ama87I	CYCGRG	1 cut(s)	359
AoxI	GGCC	2 cut(s)	326, 395
ApeKI	GCWGC	8 cut(s)	90, 175, 178, 208, 211, 373, 419, 425
AspLEI	GCGC	1 cut(s)	84
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	47, 233
AsuII	TTCGAA	1 cut(s)	300
AvaI	CYCGRG	1 cut(s)	359
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	8 cut(s)	77, 165, 187, 220, 223, 385, 406, 437
BclI	TGATCA	2 cut(s)	238, 274
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	179, 485
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	9 cut(s)	91, 176, 179, 209, 212, 374, 420, 423, 426
BlsI	GCNGC	9 cut(s)	92, 177, 180, 210, 213, 375, 421, 424, 427
BmeT110I	CYCGRG	1 cut(s)	359
BmgT120I	GGNCC	1 cut(s)	396
BpmI	CTGGAG	1 cut(s)	324
Bpu14I	TTCGAA	1 cut(s)	300
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	1 cut(s)	319
Bse3DI	GCAATG	1 cut(s)	147
BseDI	CCNNGG	1 cut(s)	129
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	471
BseRI	GAGGAG	3 cut(s)	211, 218, 327
BseXI	GCAGC	8 cut(s)	77, 165, 187, 220, 223, 385, 406, 437
BshFI	GGCC	2 cut(s)	328, 397
BsiHKAI	GWGCWC	1 cut(s)	337
BsiHKCI	CYCGRG	1 cut(s)	359
BsiSI	CCGG	1 cut(s)	320
BsmAI	GTCTC	1 cut(s)	227
BsnI	GGCC	2 cut(s)	328, 397
BsoBI	CYCGRG	1 cut(s)	359
Bsp119I	TTCGAA	1 cut(s)	300
Bsp1286I	GDGCHC	1 cut(s)	337
Bsp1407I	TGTACA	1 cut(s)	257
Bsp143I	GATC	5 cut(s)	73, 121, 238, 274, 343
BspACI	CCGC	1 cut(s)	423
BspANI	GGCC	2 cut(s)	328, 397
BspCNI	CTCAG	1 cut(s)	470
BspMAI	CTGCAG	1 cut(s)	183
BspMI	ACCTGC	1 cut(s)	424
BspPI	GGATC	1 cut(s)	116
BspT104I	TTCGAA	1 cut(s)	300
BsrDI	GCAATG	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	257
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	5 cut(s)	73, 121, 238, 274, 343
BssT1I	CCWWGG	1 cut(s)	129
Bst6I	CTCTTC	1 cut(s)	483
BstAPI	GCANNNNNTGC	3 cut(s)	90, 419, 431
BstAUI	TGTACA	1 cut(s)	257
BstBI	TTCGAA	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	107, 285
BstDEI	CTNAG	1 cut(s)	457
BstHHI	GCGC	1 cut(s)	84
BstKTI	GATC	5 cut(s)	76, 124, 241, 277, 346
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	5 cut(s)	73, 121, 238, 274, 343
BstMWI	GCNNNNNNNGC	5 cut(s)	90, 370, 419, 425, 431
BstSFI	CTRYAG	2 cut(s)	179, 485
BstV1I	GCAGC	8 cut(s)	77, 165, 187, 220, 223, 385, 406, 437
BsuRI	GGCC	2 cut(s)	328, 397
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	107, 285
CaiI	CAGNNNCTG	2 cut(s)	217, 236
CfoI	GCGC	1 cut(s)	84
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	1 cut(s)	393
CviJI	RGCY	9 cut(s)	66, 90, 178, 214, 283, 328, 364, 376, 397
CviKI_1	RGCY	9 cut(s)	66, 90, 178, 214, 283, 328, 364, 376, 397
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	457
DpnI	GATC	5 cut(s)	75, 123, 240, 276, 345
DpnII	GATC	5 cut(s)	73, 121, 238, 274, 343
Eam1104I	CTCTTC	1 cut(s)	483
EarI	CTCTTC	1 cut(s)	483
Eco130I	CCWWGG	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	310
Eco57I	CTGAAG	2 cut(s)	52, 239
Eco88I	CYCGRG	1 cut(s)	359
EcoRV	GATATC	1 cut(s)	310
EcoT14I	CCWWGG	1 cut(s)	129
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	396
FaiI	YATR	2 cut(s)	379, 394
FatI	CATG	1 cut(s)	392
FbaI	TGATCA	2 cut(s)	238, 274
Fnu4HI	GCNGC	9 cut(s)	91, 176, 179, 209, 212, 374, 420, 423, 426
Fsp4HI	GCNGC	9 cut(s)	91, 176, 179, 209, 212, 374, 420, 423, 426
GlaI	GCGC	1 cut(s)	83
GluI	GCNGC	9 cut(s)	91, 176, 179, 209, 212, 374, 420, 423, 426
GsuI	CTGGAG	1 cut(s)	324
HaeIII	GGCC	2 cut(s)	328, 397
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	396
Hin6I	GCGC	1 cut(s)	82
HinP1I	GCGC	1 cut(s)	82
HindIII	AAGCTT	1 cut(s)	64
HinfI	GANTC	1 cut(s)	302
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	2 cut(s)	47, 233
Hpy188I	TCNGA	6 cut(s)	71, 121, 219, 232, 307, 460
Hpy188III	TCNNGA	1 cut(s)	341
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	2 cut(s)	62, 184
HpyCH4V	TGCA	5 cut(s)	160, 181, 287, 373, 440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	90, 370, 419, 425, 431
HpyF3I	CTNAG	1 cut(s)	457
Hsp92II	CATG	1 cut(s)	396
HspAI	GCGC	1 cut(s)	82
Ksp22I	TGATCA	2 cut(s)	238, 274
Kzo9I	GATC	5 cut(s)	73, 121, 238, 274, 343
LmnI	GCTCC	2 cut(s)	205, 340
LpnPI	CCDG	6 cut(s)	91, 157, 297, 333, 354, 429
Lsp1109I	GCAGC	8 cut(s)	77, 165, 187, 220, 223, 385, 406, 437
MalI	GATC	5 cut(s)	75, 123, 240, 276, 345
MboI	GATC	5 cut(s)	73, 121, 238, 274, 343
MboII	GAAGA	2 cut(s)	232, 470
MhlI	GDGCHC	1 cut(s)	337
MluCI	AATT	1 cut(s)	367
MmeI	TCCRAC	1 cut(s)	149
MnlI	CCTC	6 cut(s)	154, 189, 192, 196, 348, 484
MseI	TTAA	2 cut(s)	35, 366
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	5 cut(s)	90, 370, 419, 425, 431
NdeII	GATC	5 cut(s)	73, 121, 238, 274, 343
NlaIII	CATG	1 cut(s)	396
NspV	TTCGAA	1 cut(s)	300
PaqCI	CACCTGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	302
PkrI	GCNGC	9 cut(s)	92, 177, 180, 210, 213, 375, 421, 424, 427
PspPI	GGNCC	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	183
PstNI	CAGNNNCTG	2 cut(s)	217, 236
PvuII	CAGCTG	1 cut(s)	178
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SaqAI	TTAA	2 cut(s)	35, 366
SatI	GCNGC	9 cut(s)	91, 176, 179, 209, 212, 374, 420, 423, 426
Sau3AI	GATC	5 cut(s)	73, 121, 238, 274, 343
Sau96I	GGNCC	1 cut(s)	396
SduI	GDGCHC	1 cut(s)	337
SfcI	CTRYAG	2 cut(s)	179, 485
SfuI	TTCGAA	1 cut(s)	300
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	1 cut(s)	423
StyI	CCWWGG	1 cut(s)	129
TaqI	TCGA	1 cut(s)	300
TasI	AATT	1 cut(s)	367
TatI	WGTACW	1 cut(s)	257
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	1 cut(s)	302
Tru1I	TTAA	2 cut(s)	35, 366
Tru9I	TTAA	2 cut(s)	35, 366
TseI	GCWGC	8 cut(s)	90, 175, 178, 208, 211, 373, 419, 425
TspDTI	ATGAA	2 cut(s)	6, 470

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.