Rroxscaffold_2G00092870

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
14326551 .. 14326931
381 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00092870.1

Sequence Viewer

Length: 381 bp
ATGGGTAGGCACAGCTCTGATCCGATTATGGTTAGTTCTTCCATTGCTCTCTTGCAAGAGAGGTTCAGACAGTTGCAGAAAGTGAAGGAGAGGAGGGAGGAGCAACAGCTTCTGCAGTTTTTGTCCGAGACAGAAAGGGTTGCACCCTCAACGAGGCATTTTGAGCCTGCAACCCCCTCTTTCCAATCCGATATGGTGCTTCCTCTCAGGCCGTGTACTCCTGCAGCAGACTCATCACTCTCTCTGGGGCTCAATTTGCAGCCTAAACAAGTTGATTATTGTGTCATGAAGACTGCACATCCATTCTCAACCTCATCAACCACAACAAGTGCTTCAAGAAAATATGACAATTCAGAGGTTGATACCTCTCTTCATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.17

Weight (kDa)

6.9

Isoelectric Point (pI)

69.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 14
AfaI GTAC 1 cut(s) 217
AfiI CCNNNNNNNGG 1 cut(s) 153
AgsI TTSAA 1 cut(s) 336
AluBI AGCT 2 cut(s) 15, 109
AluI AGCT 2 cut(s) 15, 109
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 14
AlwNI CAGNNNCTG 1 cut(s) 112
AoxI GGCC 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 224, 259
BanII GRGCYC 1 cut(s) 252
BbsI GAAGAC 1 cut(s) 296
BbvI GCAGC 2 cut(s) 236, 271
BceAI ACGGC 1 cut(s) 196
BcoDI GTCTC 1 cut(s) 122
BfmI CTRYAG 2 cut(s) 113, 222
BisI GCNGC 2 cut(s) 225, 260
BlsI GCNGC 2 cut(s) 226, 261
BpiI GAAGAC 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 153
Bse3DI GCAATG 1 cut(s) 42
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 153
BseMI GCAATG 1 cut(s) 42
BseMII CTCAG 1 cut(s) 220
BseRI GAGGAG 2 cut(s) 106, 113
BseXI GCAGC 2 cut(s) 236, 271
BsgI GTGCAG 1 cut(s) 279
BshFI GGCC 1 cut(s) 211
BslI CCNNNNNNNGG 1 cut(s) 153
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 1 cut(s) 211
Bsp1286I GDGCHC 1 cut(s) 252
Bsp143I GATC 1 cut(s) 19
BspANI GGCC 1 cut(s) 211
BspCNI CTCAG 1 cut(s) 219
BspHI TCATGA 1 cut(s) 285
BspMAI CTGCAG 2 cut(s) 117, 226
BspPI GGATC 1 cut(s) 14
BsrDI GCAATG 1 cut(s) 42
BssMI GATC 1 cut(s) 19
Bst4CI ACNGT 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 375
BstC8I GCNNGC 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 206
BstENI CCTNNNNNAGG 1 cut(s) 151
BstF5I GGATG 1 cut(s) 298
BstKTI GATC 1 cut(s) 22
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 163, 256
BstSFI CTRYAG 2 cut(s) 113, 222
BstV1I GCAGC 2 cut(s) 236, 271
BstV2I GAAGAC 1 cut(s) 296
BsuRI GGCC 1 cut(s) 211
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 168
CaiI CAGNNNCTG 1 cut(s) 112
CciI TCATGA 1 cut(s) 285
Csp6I GTAC 1 cut(s) 216
CviAII CATG 1 cut(s) 286
CviJI RGCY 6 cut(s) 15, 109, 166, 211, 250, 262
CviKI_1 RGCY 6 cut(s) 15, 109, 166, 211, 250, 262
CviQI GTAC 1 cut(s) 216
DdeI CTNAG 1 cut(s) 206
DpnI GATC 1 cut(s) 21
DpnII GATC 1 cut(s) 19
Eam1104I CTCTTC 1 cut(s) 375
EarI CTCTTC 1 cut(s) 375
Eco24I GRGCYC 1 cut(s) 252
EcoNI CCTNNNNNAGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 252
FaeI CATG 1 cut(s) 289
FaiI YATR 4 cut(s) 29, 194, 287, 345
FatI CATG 1 cut(s) 285
Fnu4HI GCNGC 2 cut(s) 225, 260
FokI GGATG 1 cut(s) 285
FriOI GRGCYC 1 cut(s) 252
Fsp4HI GCNGC 2 cut(s) 225, 260
GluI GCNGC 2 cut(s) 225, 260
HaeIII GGCC 1 cut(s) 211
Hin1II CATG 1 cut(s) 289
HinfI GANTC 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 216
Hpy188I TCNGA 6 cut(s) 19, 24, 68, 127, 190, 355
Hpy188III TCNNGA 2 cut(s) 286, 336
Hpy8I GTNNAC 1 cut(s) 216
HpyAV CCTTC 1 cut(s) 79
HpyCH4III ACNGT 1 cut(s) 72
HpyCH4V TGCA 8 cut(s) 55, 76, 115, 143, 170, 224, 259, 296
HpyF10VI GCNNNNNNNGC 2 cut(s) 163, 256
HpyF3I CTNAG 1 cut(s) 206
Hsp92II CATG 1 cut(s) 289
Kzo9I GATC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 100
LpnPI CCDG 4 cut(s) 180, 193, 230, 234
Lsp1109I GCAGC 2 cut(s) 236, 271
MalI GATC 1 cut(s) 21
MboI GATC 1 cut(s) 19
MboII GAAGA 3 cut(s) 30, 301, 362
MhlI GDGCHC 1 cut(s) 252
MluCI AATT 2 cut(s) 253, 349
MlyI GAGTC 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 163, 256
NdeII GATC 1 cut(s) 19
NlaIII CATG 1 cut(s) 289
PagI TCATGA 1 cut(s) 285
PkrI GCNGC 2 cut(s) 226, 261
PleI GAGTC 1 cut(s) 224
PpsI GAGTC 1 cut(s) 224
PstI CTGCAG 2 cut(s) 117, 226
PstNI CAGNNNCTG 1 cut(s) 112
RsaI GTAC 1 cut(s) 217
RsaNI GTAC 1 cut(s) 216
SatI GCNGC 2 cut(s) 225, 260
Sau3AI GATC 1 cut(s) 19
SchI GAGTC 1 cut(s) 224
SduI GDGCHC 1 cut(s) 252
SetI ASST 6 cut(s) 17, 65, 111, 314, 360, 368
SfcI CTRYAG 2 cut(s) 113, 222
Sse9I AATT 2 cut(s) 253, 349
TaaI ACNGT 1 cut(s) 72
TasI AATT 2 cut(s) 253, 349
TatI WGTACW 1 cut(s) 215
TseI GCWGC 2 cut(s) 224, 259
TspDTI ATGAA 2 cut(s) 302, 362
XagI CCTNNNNNAGG 1 cut(s) 151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.