Prupe.4G234900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006873
Physical Location & Seq
Forward (+)
15162902 .. 15163613
712 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G234900.1

Sequence Viewer

Length: 408 bp
ATGGCTAGGCAAGGACTTGATGGCACTGTTTCTCATTCTTCCATTGTCCTATTGCAAGAGAGGTTTAGGCAATTGCAGAGAGCAAAGGAGATGAGGGAGGAGAGAGAGCTCTTGAGGCAGATGTTATCTGGATCAGAGAGAATTAACGTTCCAGCCACACATTATGAGCTAACTGGGTTGTTCTTCCAATCTGGTGGCTCTGGTAGCTTGACAGATCCTCATTATAAGCCACCTCCCCAAGGCTCAATGTACGACAAACCTAACTTGCAGAACAAGAATGCTAATTTTCTGCAGGTCTCTGATGATGCGAGTCAAGTCTTGGGAAACATATGTTCAAGTTCAGTATCGGTCGTGAACAGAACAAACAACTTCGATGATTCAGATGTTGACACCTCACTTCACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

15.05

Weight (kDa)

5.74

Isoelectric Point (pI)

53.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 283
AclI AACGTT 1 cut(s) 147
AclWI GGATC 2 cut(s) 139, 209
AfaI GTAC 1 cut(s) 251
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 336
AluBI AGCT 3 cut(s) 109, 169, 207
AluI AGCT 3 cut(s) 109, 169, 207
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 301
AlwI GGATC 2 cut(s) 139, 209
AsuHPI GGTGA 1 cut(s) 392
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BccI CCATC 1 cut(s) 14
BcoDI GTCTC 1 cut(s) 301
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 290
BfuAI ACCTGC 1 cut(s) 283
BmrI ACTGGG 1 cut(s) 183
BmsI GCATC 1 cut(s) 295
BmuI ACTGGG 1 cut(s) 183
BpuEI CTTGAG 1 cut(s) 133
BsaI GGTCTC 1 cut(s) 301
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 178
BseRI GAGGAG 1 cut(s) 113
Bsh1285I CGRYCG 1 cut(s) 351
BsiEI CGRYCG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 111
BslI CCNNNNNNNGG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 301
BsmI GAATGC 1 cut(s) 283
Bso31I GGTCTC 1 cut(s) 301
Bsp1286I GDGCHC 1 cut(s) 111
Bsp143I GATC 2 cut(s) 131, 214
BspMAI CTGCAG 1 cut(s) 294
BspMI ACCTGC 1 cut(s) 283
BspPI GGATC 2 cut(s) 139, 209
BspTNI GGTCTC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 178
BssECI CCNNGG 1 cut(s) 238
BssMI GATC 2 cut(s) 131, 214
BssT1I CCWWGG 1 cut(s) 238
Bst4CI ACNGT 1 cut(s) 28
BstENI CCTNNNNNAGG 1 cut(s) 237
BstKTI GATC 2 cut(s) 134, 217
BstMAI GTCTC 1 cut(s) 301
BstMBI GATC 2 cut(s) 131, 214
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 2 cut(s) 115, 204
BstSFI CTRYAG 1 cut(s) 290
BstX2I RGATCY 1 cut(s) 214
BstXI CCANNNNNNTGG 1 cut(s) 194
BstYI RGATCY 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 24
BveI ACCTGC 1 cut(s) 283
Csp6I GTAC 1 cut(s) 250
CviJI RGCY 8 cut(s) 5, 109, 155, 169, 198, 207, 229, 243
CviKI_1 RGCY 8 cut(s) 5, 109, 155, 169, 198, 207, 229, 243
CviQI GTAC 1 cut(s) 250
DpnI GATC 2 cut(s) 133, 216
DpnII GATC 2 cut(s) 131, 214
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 1 cut(s) 238
Eco24I GRGCYC 1 cut(s) 111
Eco31I GGTCTC 1 cut(s) 301
Eco53kI GAGCTC 1 cut(s) 109
EcoICRI GAGCTC 1 cut(s) 109
EcoNI CCTNNNNNAGG 1 cut(s) 237
EcoT14I CCWWGG 1 cut(s) 238
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 1 cut(s) 238
FaiI YATR 4 cut(s) 165, 225, 329, 331
FauNDI CATATG 1 cut(s) 329
FriOI GRGCYC 1 cut(s) 111
FspBI CTAG 1 cut(s) 6
HincII GTYRAC 1 cut(s) 388
HindII GTYRAC 1 cut(s) 388
HinfI GANTC 2 cut(s) 310, 377
HphI GGTGA 1 cut(s) 392
Hpy166II GTNNAC 2 cut(s) 355, 388
Hpy188I TCNGA 3 cut(s) 136, 301, 382
Hpy188III TCNNGA 3 cut(s) 112, 129, 352
Hpy8I GTNNAC 2 cut(s) 355, 388
HpyCH4III ACNGT 1 cut(s) 28
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 4 cut(s) 55, 76, 268, 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 115, 204
HpySE526I ACGT 1 cut(s) 147
Kzo9I GATC 2 cut(s) 131, 214
LpnPI CCDG 6 cut(s) 114, 159, 165, 177, 186, 278
LweI GCATC 1 cut(s) 295
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 133, 216
MboI GATC 2 cut(s) 131, 214
MboII GAAGA 2 cut(s) 30, 175
MfeI CAATTG 1 cut(s) 71
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 3 cut(s) 71, 141, 283
MlyI GAGTC 1 cut(s) 319
MnlI CCTC 7 cut(s) 54, 87, 91, 108, 228, 243, 403
MseI TTAA 1 cut(s) 144
MunI CAATTG 1 cut(s) 71
Mva1269I GAATGC 1 cut(s) 283
MwoI GCNNNNNNNGC 2 cut(s) 115, 204
NdeI CATATG 1 cut(s) 329
NdeII GATC 2 cut(s) 131, 214
PctI GAATGC 1 cut(s) 283
PfeI GAWTC 1 cut(s) 377
PleI GAGTC 1 cut(s) 318
PpsI GAGTC 1 cut(s) 318
PsiI TTATAA 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 111
Psp1406I AACGTT 1 cut(s) 147
PstI CTGCAG 1 cut(s) 294
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 144
Sau3AI GATC 2 cut(s) 131, 214
SchI GAGTC 1 cut(s) 319
SduI GDGCHC 1 cut(s) 111
SfaNI GCATC 1 cut(s) 295
SfcI CTRYAG 1 cut(s) 290
SmlI CTYRAG 1 cut(s) 112
SmoI CTYRAG 1 cut(s) 112
Sse9I AATT 3 cut(s) 71, 141, 283
SspMI CTAG 1 cut(s) 6
SstI GAGCTC 1 cut(s) 111
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 28
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 372
TaqII GACCGA 1 cut(s) 337
TasI AATT 3 cut(s) 71, 141, 283
TfiI GAWTC 1 cut(s) 377
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 1 cut(s) 31
TspRI CASTG 1 cut(s) 31
XagI CCTNNNNNAGG 1 cut(s) 237
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.