Rorug02G0455000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0006873
Physical Location & Seq
Reverse (-)
58450726 .. 58450962
237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0455000.1

Sequence Viewer

Length: 237 bp
ATGGCTATGTTCAAGGCATTCACTTACTGCATCATTGCTCTCTTGGTGTGCTCGCTCTGTATTGACACTGCCAATGCGAATCAACTTAAATATGGCGCCTTGAAACCAGACCAGCCATCATGTCGGGGGAAAAACCCCTGCATGCCTCCACCAAGCAACAATTATGACAGAGGTTGTTCAAGGGAGACACGCTGCAGGGGTGGCCCAGATTCCGGTAACAACAAGGTGAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

78

Amino Acids

8.52

Weight (kDa)

8.94

Isoelectric Point (pI)

29.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RALF PF05498 29 - 67 5.1e-09 Rapid ALkalinization Factor (RALF)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 95
AcyI GRCGYC 1 cut(s) 96
AfiI CCNNNNNNNGG 1 cut(s) 212
AgsI TTSAA 3 cut(s) 13, 103, 180
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 1 cut(s) 179
AoxI GGCC 1 cut(s) 202
ApeKI GCWGC 1 cut(s) 192
AspLEI GCGC 1 cut(s) 98
AspS9I GGNCC 1 cut(s) 203
BanI GGYRCC 1 cut(s) 95
Bbv12I GWGCWC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 179
BccI CCATC 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 193
BfoI RGCGCY 1 cut(s) 99
BisI GCNGC 1 cut(s) 193
BlsI GCNGC 1 cut(s) 194
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 97
BmsI GCATC 1 cut(s) 39
BsaHI GRCGYC 1 cut(s) 96
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 33
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 33
BseXI GCAGC 1 cut(s) 179
BshFI GGCC 1 cut(s) 204
BshNI GGYRCC 1 cut(s) 95
BsiHKAI GWGCWC 1 cut(s) 53
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 212
BsmAI GTCTC 1 cut(s) 179
BsmI GAATGC 1 cut(s) 17
BsnI GGCC 1 cut(s) 204
Bsp1286I GDGCHC 1 cut(s) 53
BspANI GGCC 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 197
BspT107I GGYRCC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 33
BssNI GRCGYC 1 cut(s) 96
BstACI GRCGYC 1 cut(s) 96
BstC8I GCNNGC 2 cut(s) 53, 143
BstH2I RGCGCY 1 cut(s) 99
BstHHI GCGC 1 cut(s) 98
BstMAI GTCTC 1 cut(s) 179
BstMWI GCNNNNNNNGC 1 cut(s) 201
BstNSI RCATGY 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 179
BsuRI GGCC 1 cut(s) 204
BtsI GCAGTG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 66
Cac8I GCNNGC 2 cut(s) 53, 143
CfoI GCGC 1 cut(s) 98
Cfr13I GGNCC 1 cut(s) 203
CviAII CATG 2 cut(s) 120, 142
CviJI RGCY 3 cut(s) 5, 115, 204
CviKI_1 RGCY 3 cut(s) 5, 115, 204
DinI GGCGCC 1 cut(s) 97
EgeI GGCGCC 1 cut(s) 97
EheI GGCGCC 1 cut(s) 97
FaeI CATG 2 cut(s) 123, 145
FaiI YATR 5 cut(s) 8, 93, 121, 143, 165
FatI CATG 2 cut(s) 119, 141
Fnu4HI GCNGC 1 cut(s) 193
Fsp4HI GCNGC 1 cut(s) 193
GlaI GCGC 1 cut(s) 97
GluI GCNGC 1 cut(s) 193
HaeII RGCGCY 1 cut(s) 99
HaeIII GGCC 1 cut(s) 204
HapII CCGG 1 cut(s) 213
HhaI GCGC 1 cut(s) 98
Hin1I GRCGYC 1 cut(s) 96
Hin1II CATG 2 cut(s) 123, 145
Hin6I GCGC 1 cut(s) 96
HinP1I GCGC 1 cut(s) 96
HinfI GANTC 2 cut(s) 79, 209
HpaII CCGG 1 cut(s) 213
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 30, 141, 195
HpyF10VI GCNNNNNNNGC 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 96
Hsp92II CATG 2 cut(s) 123, 145
HspAI GCGC 1 cut(s) 96
KasI GGCGCC 1 cut(s) 95
LpnPI CCDG 6 cut(s) 120, 125, 151, 181, 219, 226
Lsp1109I GCAGC 1 cut(s) 179
LweI GCATC 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 160
Mly113I GGCGCC 1 cut(s) 96
MnlI CCTC 2 cut(s) 156, 164
MseI TTAA 2 cut(s) 87, 235
MspI CCGG 1 cut(s) 213
Mva1269I GAATGC 1 cut(s) 17
MwoI GCNNNNNNNGC 1 cut(s) 201
NarI GGCGCC 1 cut(s) 96
NlaIII CATG 2 cut(s) 123, 145
NlaIV GGNNCC 1 cut(s) 97
NspI RCATGY 1 cut(s) 145
PaeI GCATGC 1 cut(s) 145
PctI GAATGC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 79, 209
PkrI GCNGC 1 cut(s) 194
PluTI GGCGCC 1 cut(s) 99
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 203
PstI CTGCAG 1 cut(s) 197
SaqAI TTAA 2 cut(s) 87, 235
SatI GCNGC 1 cut(s) 193
Sau96I GGNCC 1 cut(s) 203
SduI GDGCHC 1 cut(s) 53
SetI ASST 2 cut(s) 175, 228
SfaNI GCATC 1 cut(s) 39
SfcI CTRYAG 1 cut(s) 193
SfoI GGCGCC 1 cut(s) 97
SphI GCATGC 1 cut(s) 145
Sse9I AATT 1 cut(s) 160
SspDI GGCGCC 1 cut(s) 95
TasI AATT 1 cut(s) 160
TfiI GAWTC 2 cut(s) 79, 209
Tru1I TTAA 2 cut(s) 87, 235
Tru9I TTAA 2 cut(s) 87, 235
TscAI CASTG 1 cut(s) 73
TseI GCWGC 1 cut(s) 192
TspRI CASTG 1 cut(s) 73
XceI RCATGY 1 cut(s) 145
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.