Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006873

Physical Location & Seq

Genomic Coordinates Forward (+)

32411006 .. 32414097

Gene Structure 3092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g41090.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGGGCAGGCAAAGCTCTGATCCGATTATGGTCAGTTCTTCCATTGCTCTTTTGCAAGAGAGGTTCAGACAGTTGCAGAAAGTGAAAGAGAGGAGGGAGGAGCAACAGCTTCTTCAGTTTTTGTCTGAGACAGAAAGGGTGGCGCCCCCAACGAGGCATGTTGAGCCTGCAAGGCTCTCTTTCCAATCCGATATGGTGCTTCCTCTTAGGCCGAGTACTCCTGCAGCAGACTCATCACTCTCTCTGGGGCTCAATTTGCAGCCCAAGCATATTGATTATTGTGGCATGAATACTGCACATCCATTCTCAACCTCATCAACCACAACAAGTGCTTCAAGAAAATATGACAATTCAGAGCTTGATACATCTCTTCATCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.16

Weight (kDa)

6.91

Isoelectric Point (pI)

76.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006873)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16447
fragaria_vesca	FvH4_3g24120 FvH4_6g41090 FvH4_6g41090
prunus_persica	Prupe.3G201300_v2.0.a1 Prupe.4G234900_v2.0.a1
pyrus_communis	pycom09g04660 pycom17g10490
rosa_chinensis	RchiOBHm_Chr2g0156651 RchiOBHm_Chr5g0042781
rosa_laevigata	RLG00000020928 RLG00000034151
rosa_multiflora	Rmu_sc0002079.1_g000001 Rmu_sc0018228.1_g000002
rosa_roxburghii	Rroxscaffold_1G00037840 Rroxscaffold_2G00092870
rosa_rugosa	Rorug02G0455000
rosa_samantha	Rh2AG520700 Rh2BG533900 Rh2CG505700 Rh2DG542700 Rh5AG289400 Rh5BG293500 Rh5CG326100 Rh5DG303500
rosa_wichuraiana	Rw2G042960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AclWI	GGATC	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	143
AfaI	GTAC	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	153
AgsI	TTSAA	1 cut(s)	336
AluBI	AGCT	3 cut(s)	15, 109, 358
AluI	AGCT	3 cut(s)	15, 109, 358
Alw26I	GTCTC	1 cut(s)	122
AlwI	GGATC	1 cut(s)	14
AoxI	GGCC	1 cut(s)	209
ApeKI	GCWGC	2 cut(s)	224, 259
AspLEI	GCGC	1 cut(s)	145
BanI	GGYRCC	1 cut(s)	142
BanII	GRGCYC	1 cut(s)	252
BbvI	GCAGC	2 cut(s)	236, 271
BcoDI	GTCTC	1 cut(s)	122
BfmI	CTRYAG	1 cut(s)	222
BfoI	RGCGCY	1 cut(s)	146
BglI	GCCNNNNNGGC	1 cut(s)	172
BisI	GCNGC	2 cut(s)	225, 260
BlsI	GCNGC	2 cut(s)	226, 261
BmcAI	AGTACT	1 cut(s)	217
BmiI	GGNNCC	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	153
Bse3DI	GCAATG	1 cut(s)	42
BseGI	GGATG	1 cut(s)	298
BseLI	CCNNNNNNNGG	1 cut(s)	153
BseMI	GCAATG	1 cut(s)	42
BseMII	CTCAG	1 cut(s)	117
BseRI	GAGGAG	2 cut(s)	106, 113
BseXI	GCAGC	2 cut(s)	236, 271
BsgI	GTGCAG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	211
BshNI	GGYRCC	1 cut(s)	142
BslI	CCNNNNNNNGG	1 cut(s)	153
BsmAI	GTCTC	1 cut(s)	122
BsnI	GGCC	1 cut(s)	211
Bsp1286I	GDGCHC	1 cut(s)	252
Bsp143I	GATC	1 cut(s)	19
BspANI	GGCC	1 cut(s)	211
BspCNI	CTCAG	1 cut(s)	118
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	226
BspPI	GGATC	1 cut(s)	14
BspT107I	GGYRCC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	42
BssMI	GATC	1 cut(s)	19
BssNI	GRCGYC	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	72
Bst6I	CTCTTC	1 cut(s)	375
BstACI	GRCGYC	1 cut(s)	143
BstC8I	GCNNGC	2 cut(s)	8, 168
BstDEI	CTNAG	2 cut(s)	126, 206
BstF5I	GGATG	1 cut(s)	298
BstH2I	RGCGCY	1 cut(s)	146
BstHHI	GCGC	1 cut(s)	145
BstKTI	GATC	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	122
BstMBI	GATC	1 cut(s)	19
BstMWI	GCNNNNNNNGC	5 cut(s)	12, 163, 172, 256, 265
BstNSI	RCATGY	1 cut(s)	161
BstSFI	CTRYAG	1 cut(s)	222
BstV1I	GCAGC	2 cut(s)	236, 271
BsuRI	GGCC	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	298
Cac8I	GCNNGC	2 cut(s)	8, 168
CfoI	GCGC	1 cut(s)	145
Csp6I	GTAC	1 cut(s)	216
CviAII	CATG	2 cut(s)	158, 286
CviJI	RGCY	8 cut(s)	15, 109, 166, 175, 211, 250, 262, 358
CviKI_1	RGCY	8 cut(s)	15, 109, 166, 175, 211, 250, 262, 358
CviQI	GTAC	1 cut(s)	216
DdeI	CTNAG	2 cut(s)	126, 206
DinI	GGCGCC	1 cut(s)	144
DpnI	GATC	1 cut(s)	21
DpnII	GATC	1 cut(s)	19
Eam1104I	CTCTTC	1 cut(s)	375
EarI	CTCTTC	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	252
Eco57I	CTGAAG	1 cut(s)	98
EcoT38I	GRGCYC	1 cut(s)	252
EgeI	GGCGCC	1 cut(s)	144
EheI	GGCGCC	1 cut(s)	144
FaeI	CATG	2 cut(s)	161, 289
FaiI	YATR	6 cut(s)	29, 159, 194, 270, 287, 345
FalI	AAGNNNNNCTT	2 cut(s)	163, 195
FatI	CATG	2 cut(s)	157, 285
Fnu4HI	GCNGC	2 cut(s)	225, 260
FokI	GGATG	1 cut(s)	285
FriOI	GRGCYC	1 cut(s)	252
Fsp4HI	GCNGC	2 cut(s)	225, 260
GlaI	GCGC	1 cut(s)	144
GluI	GCNGC	2 cut(s)	225, 260
HaeII	RGCGCY	1 cut(s)	146
HaeIII	GGCC	1 cut(s)	211
HhaI	GCGC	1 cut(s)	145
Hin1I	GRCGYC	1 cut(s)	143
Hin1II	CATG	2 cut(s)	161, 289
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
HinfI	GANTC	1 cut(s)	230
Hpy188I	TCNGA	6 cut(s)	19, 24, 68, 127, 190, 355
Hpy188III	TCNNGA	1 cut(s)	336
HpyCH4III	ACNGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	55, 76, 170, 224, 259, 296
HpyF10VI	GCNNNNNNNGC	5 cut(s)	12, 163, 172, 256, 265
HpyF3I	CTNAG	2 cut(s)	126, 206
Hsp92I	GRCGYC	1 cut(s)	143
Hsp92II	CATG	2 cut(s)	161, 289
HspAI	GCGC	1 cut(s)	143
KasI	GGCGCC	1 cut(s)	142
Kzo9I	GATC	1 cut(s)	19
LmnI	GCTCC	1 cut(s)	100
LpnPI	CCDG	3 cut(s)	180, 230, 234
Lsp1109I	GCAGC	2 cut(s)	236, 271
MalI	GATC	1 cut(s)	21
MboI	GATC	1 cut(s)	19
MboII	GAAGA	3 cut(s)	30, 104, 362
MhlI	GDGCHC	1 cut(s)	252
MluCI	AATT	2 cut(s)	253, 349
Mly113I	GGCGCC	1 cut(s)	143
MlyI	GAGTC	1 cut(s)	224
MnlI	CCTC	7 cut(s)	54, 84, 87, 91, 147, 213, 322
MwoI	GCNNNNNNNGC	5 cut(s)	12, 163, 172, 256, 265
NarI	GGCGCC	1 cut(s)	143
NdeII	GATC	1 cut(s)	19
NlaIII	CATG	2 cut(s)	161, 289
NlaIV	GGNNCC	1 cut(s)	144
NmeAIII	GCCGAG	1 cut(s)	237
NspI	RCATGY	1 cut(s)	161
PkrI	GCNGC	2 cut(s)	226, 261
PleI	GAGTC	1 cut(s)	224
PluTI	GGCGCC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	224
PspN4I	GGNNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	217
RsaNI	GTAC	1 cut(s)	216
SatI	GCNGC	2 cut(s)	225, 260
Sau3AI	GATC	1 cut(s)	19
ScaI	AGTACT	1 cut(s)	217
SchI	GAGTC	1 cut(s)	224
SduI	GDGCHC	1 cut(s)	252
SetI	ASST	5 cut(s)	17, 65, 111, 314, 360
SfcI	CTRYAG	1 cut(s)	222
SfoI	GGCGCC	1 cut(s)	144
Sse9I	AATT	2 cut(s)	253, 349
SspDI	GGCGCC	1 cut(s)	142
TaaI	ACNGT	1 cut(s)	72
TasI	AATT	2 cut(s)	253, 349
TatI	WGTACW	1 cut(s)	215
TseI	GCWGC	2 cut(s)	224, 259
TspDTI	ATGAA	2 cut(s)	302, 362
XceI	RCATGY	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.