Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0007295

Physical Location & Seq

Genomic Coordinates Forward (+)

17980478 .. 17982894

Gene Structure 2417 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g24930.t4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGACTGACCCTCTCAAGGCCCAGAATTGGATCCAACAACACGTCACCCCTCACCTCCCTCAGACCAAAATCTCCTTCATCCTCGTCGGCAACGAAGTCCTCGGCGGCAACGACACCAAGCTCATGTCGTATCTCCTCACCGCAATGCAATCCGTCTACGCCGCTCTTGTCAACCTCGGCCTTTCCAAAACCGTCACCGTCGTCACCGCGCATTCCCTCAATATTATGGGAAGCTCGTACCCGCCGTCGGCGGGGACTTTCCGGGAAGATCTCGCACAATATATCCAACCACTTCTGAACTTCCACTCACAAATCAATGCCCCTTTTCTCATAAACGCGTATCCTTATTTCGCTTACAAGGATAGTCCTAATGAAGTTCCAATAGAGTACGTGCTTTTTCAGCCAAACTCCGGCATGAATGATTCCGGAACTAATCTTCACTACGATAACATGCTCGATGCTCAGATTGACGCTGTGTACGCCGCAATGAAAGTGATGGGGCACACTGACATAGAAGTTCGGATATCGGAGACAGGGTGGCCATCCAAGGGGGATGAGAATGAAGCCGGAGCCACGCCGGAGAATGCCGGGATTTACAATGGGAATCTGCTGAAGAAAATTGCGGAGAAGAAAGGTACACCAGCCAGGCCTGACATTCCTATTGATACGTACATTTTTGCTCTGTTTAATGAGGACTTGAAGCCCGGTCCGGCGTCGGAGAGGAACTACGGGCTGTTTTATCCGGATGGGACTCCGGTGTATAATATCGGAGTTGATAGTTACCTTCCCACGTTAATCTTTTCGTCAGCAGCTCATGATGTTAATGCTTTGTCCATCTTCAATTTTCTGATATTTCTTACAGTGTACTTATTATGGGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001871 GO:0003674 GO:0003824 GO:0004553 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0016020 GO:0016787 GO:0016798 GO:0030246 GO:0030247 GO:0031224 GO:0031225 GO:0031226 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_17

Protein Analysis

294

Amino Acids

32.39

Weight (kDa)

4.84

Isoelectric Point (pI)

33.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_17	PF00332	33 - 348	6e-88	Glycosyl hydrolases family 17

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007295)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27500 AT2G27500 AT2G27500
fragaria_vesca	FvH4_3g24930 FvH4_3g24930 FvH4_3g24930 FvH4_3g24930
malus_domestica	MD00G1075400.v1.1 MD03G1144400.v1.1
prunus_persica	Prupe.6G130300_v2.0.a1 Prupe.6G130300_v2.0.a1
pyrus_communis	pycom03g09970 pycom11g13670
rosa_chinensis	RchiOBHm_Chr5g0044721
rosa_laevigata	RLG00000034292 RLG00000034293
rosa_multiflora	Rmu_sc0000228.1_g000002
rosa_roxburghii	Rroxscaffold_1G00036310
rosa_rugosa	Rorug05G0216900 Rorug05G0217000 Rorug05G0217100
rosa_samantha	Rh5AG300400 Rh5BG307100 Rh5DG317200
rosa_wichuraiana	Rw5G027780

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	156
AccII	CGCG	2 cut(s)	209, 338
AccIII	TCCGGA	2 cut(s)	425, 742
AciI	CCGC	8 cut(s)	105, 141, 162, 207, 242, 251, 483, 623
AclWI	GGATC	2 cut(s)	25, 38
AcoI	YGGCCR	1 cut(s)	539
AcuI	CTGAAG	1 cut(s)	632
AcyI	GRCGYC	1 cut(s)	713
AfaI	GTAC	6 cut(s)	239, 389, 479, 637, 671, 866
AfiI	CCNNNNNNNGG	6 cut(s)	16, 27, 247, 251, 410, 548
AflIII	ACRYGT	2 cut(s)	40, 336
AgsI	TTSAA	2 cut(s)	700, 841
AjiI	CACGTC	1 cut(s)	43
AjnI	CCWGG	1 cut(s)	644
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AluBI	AGCT	3 cut(s)	121, 234, 812
AluI	AGCT	3 cut(s)	121, 234, 812
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	2 cut(s)	25, 38
Aor13HI	TCCGGA	2 cut(s)	425, 742
AoxI	GGCC	4 cut(s)	18, 178, 539, 647
ApeKI	GCWGC	1 cut(s)	809
AspLEI	GCGC	1 cut(s)	211
AspS9I	GGNCC	2 cut(s)	19, 707
AsuC2I	CCSGG	3 cut(s)	263, 589, 705
AsuHPI	GGTGA	5 cut(s)	37, 44, 130, 187, 196
AvaII	GGWCC	1 cut(s)	707
BaeGI	GKGCMC	1 cut(s)	504
BalI	TGGCCA	1 cut(s)	541
BamHI	GGATCC	1 cut(s)	30
BbvI	GCAGC	1 cut(s)	821
BccI	CCATC	4 cut(s)	490, 550, 740, 842
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	646
BciVI	GTATCC	1 cut(s)	351
BcnI	CCSGG	3 cut(s)	263, 589, 705
BcoDI	GTCTC	1 cut(s)	524
BfuI	GTATCC	1 cut(s)	351
BglII	AGATCT	1 cut(s)	268
BisI	GCNGC	4 cut(s)	106, 162, 483, 810
BlsI	GCNGC	4 cut(s)	107, 163, 484, 811
Bme1390I	CCNGG	4 cut(s)	263, 589, 646, 705
Bme18I	GGWCC	1 cut(s)	707
BmgBI	CACGTC	1 cut(s)	43
BmgT120I	GGNCC	2 cut(s)	19, 707
BmiI	GGNNCC	2 cut(s)	32, 571
BmrFI	CCNGG	4 cut(s)	263, 589, 646, 705
BmsI	GCATC	1 cut(s)	448
BpuMI	CCSGG	3 cut(s)	263, 589, 705
BsaAI	YACGTR	2 cut(s)	391, 669
BsaHI	GRCGYC	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	100, 175, 546
BsaWI	WCCGGW	3 cut(s)	425, 742, 754
BsaXI	ACNNNNNCTCC	2 cut(s)	521, 551
Bsc4I	CCNNNNNNNGG	6 cut(s)	16, 27, 247, 251, 410, 548
Bse3DI	GCAATG	2 cut(s)	150, 492
BseAI	TCCGGA	2 cut(s)	425, 742
BseBI	CCWGG	1 cut(s)	646
BseDI	CCNNGG	3 cut(s)	100, 175, 546
BseGI	GGATG	4 cut(s)	78, 542, 559, 751
BseLI	CCNNNNNNNGG	6 cut(s)	16, 27, 247, 251, 410, 548
BseMI	GCAATG	2 cut(s)	150, 492
BseMII	CTCAG	2 cut(s)	74, 476
BseRI	GAGGAG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	504
BseXI	GCAGC	1 cut(s)	821
Bsh1236I	CGCG	2 cut(s)	209, 338
BshFI	GGCC	4 cut(s)	20, 180, 541, 649
BslFI	GGGAC	2 cut(s)	268, 763
BslI	CCNNNNNNNGG	6 cut(s)	16, 27, 247, 251, 410, 548
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	268, 763
BsmI	GAATGC	2 cut(s)	211, 589
BsnI	GGCC	4 cut(s)	20, 180, 541, 649
Bsp1286I	GDGCHC	1 cut(s)	504
Bsp13I	TCCGGA	2 cut(s)	425, 742
Bsp143I	GATC	2 cut(s)	30, 268
BspACI	CCGC	8 cut(s)	105, 141, 162, 207, 242, 251, 483, 623
BspANI	GGCC	4 cut(s)	20, 180, 541, 649
BspCNI	CTCAG	2 cut(s)	73, 475
BspEI	TCCGGA	2 cut(s)	425, 742
BspFNI	CGCG	2 cut(s)	209, 338
BspHI	TCATGA	1 cut(s)	814
BspLI	GGNNCC	2 cut(s)	32, 571
BspPI	GGATC	2 cut(s)	25, 38
BsrBI	CCGCTC	1 cut(s)	164
BsrDI	GCAATG	2 cut(s)	150, 492
BssECI	CCNNGG	3 cut(s)	100, 175, 546
BssMI	GATC	2 cut(s)	30, 268
BssNI	GRCGYC	1 cut(s)	713
BssT1I	CCWWGG	1 cut(s)	546
Bst2UI	CCWGG	1 cut(s)	646
Bst4CI	ACNGT	3 cut(s)	193, 199, 862
BstACI	GRCGYC	1 cut(s)	713
BstBAI	YACGTR	2 cut(s)	391, 669
BstDEI	CTNAG	2 cut(s)	60, 462
BstF5I	GGATG	4 cut(s)	78, 542, 559, 751
BstFNI	CGCG	2 cut(s)	209, 338
BstHHI	GCGC	1 cut(s)	211
BstKTI	GATC	2 cut(s)	33, 271
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	2 cut(s)	30, 268
BstMWI	GCNNNNNNNGC	2 cut(s)	400, 479
BstNI	CCWGG	1 cut(s)	646
BstNSI	RCATGY	1 cut(s)	454
BstSCI	CCNGG	4 cut(s)	261, 587, 644, 703
BstSLI	GKGCMC	1 cut(s)	504
BstSNI	TACGTA	1 cut(s)	669
BstUI	CGCG	2 cut(s)	209, 338
BstV1I	GCAGC	1 cut(s)	821
BstX2I	RGATCY	2 cut(s)	30, 268
BstYI	RGATCY	2 cut(s)	30, 268
BsuI	GTATCC	1 cut(s)	351
BsuRI	GGCC	4 cut(s)	20, 180, 541, 649
BtrI	CACGTC	1 cut(s)	43
BtsCI	GGATG	4 cut(s)	78, 542, 559, 751
BtsIMutI	CAGTG	2 cut(s)	504, 867
CciI	TCATGA	1 cut(s)	814
CfoI	GCGC	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	19, 707
CpoI	CGGWCCG	1 cut(s)	707
CseI	GACGC	2 cut(s)	479, 702
Csp6I	GTAC	6 cut(s)	238, 388, 478, 636, 670, 865
CspI	CGGWCCG	1 cut(s)	707
CviAII	CATG	4 cut(s)	124, 415, 451, 815
CviQI	GTAC	6 cut(s)	238, 388, 478, 636, 670, 865
DdeI	CTNAG	2 cut(s)	60, 462
DpnI	GATC	2 cut(s)	32, 270
DpnII	GATC	2 cut(s)	30, 268
EaeI	YGGCCR	1 cut(s)	539
Eco105I	TACGTA	1 cut(s)	669
Eco130I	CCWWGG	1 cut(s)	546
Eco147I	AGGCCT	1 cut(s)	649
Eco32I	GATATC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	632
EcoRII	CCWGG	1 cut(s)	644
EcoRV	GATATC	1 cut(s)	525
EcoT14I	CCWWGG	1 cut(s)	546
ErhI	CCWWGG	1 cut(s)	546
FaeI	CATG	4 cut(s)	127, 418, 454, 818
FaqI	GGGAC	2 cut(s)	268, 763
FatI	CATG	4 cut(s)	123, 414, 450, 814
FauI	CCCGC	2 cut(s)	244, 249
FblI	GTMKAC	1 cut(s)	156
Fnu4HI	GCNGC	4 cut(s)	106, 162, 483, 810
FokI	GGATG	4 cut(s)	65, 529, 566, 758
Fsp4HI	GCNGC	4 cut(s)	106, 162, 483, 810
GlaI	GCGC	1 cut(s)	210
GluI	GCNGC	4 cut(s)	106, 162, 483, 810
HaeIII	GGCC	4 cut(s)	20, 180, 541, 649
HgaI	GACGC	2 cut(s)	479, 702
HhaI	GCGC	1 cut(s)	211
Hin1I	GRCGYC	1 cut(s)	713
Hin1II	CATG	4 cut(s)	127, 418, 454, 818
Hin6I	GCGC	1 cut(s)	209
HinP1I	GCGC	1 cut(s)	209
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HinfI	GANTC	3 cut(s)	422, 604, 751
HphI	GGTGA	5 cut(s)	37, 44, 130, 187, 196
Hpy166II	GTNNAC	5 cut(s)	157, 172, 478, 638, 865
Hpy188I	TCNGA	8 cut(s)	63, 297, 465, 522, 529, 718, 770, 849
Hpy188III	TCNNGA	3 cut(s)	426, 743, 815
Hpy8I	GTNNAC	5 cut(s)	157, 172, 478, 638, 865
Hpy99I	CGWCG	4 cut(s)	89, 203, 250, 718
HpyAV	CCTTC	2 cut(s)	85, 794
HpyCH4III	ACNGT	3 cut(s)	193, 199, 862
HpyCH4IV	ACGT	4 cut(s)	42, 390, 668, 791
HpyCH4V	TGCA	1 cut(s)	148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	400, 479
HpyF3I	CTNAG	2 cut(s)	60, 462
HpySE526I	ACGT	4 cut(s)	42, 390, 668, 791
Hsp92I	GRCGYC	1 cut(s)	713
Hsp92II	CATG	4 cut(s)	127, 418, 454, 818
HspAI	GCGC	1 cut(s)	209
Kpn2I	TCCGGA	2 cut(s)	425, 742
Kzo9I	GATC	2 cut(s)	30, 268
LmnI	GCTCC	1 cut(s)	569
Lsp1109I	GCAGC	1 cut(s)	821
LweI	GCATC	1 cut(s)	448
MaeII	ACGT	4 cut(s)	42, 390, 668, 791
MaeIII	GTNAC	4 cut(s)	43, 193, 202, 779
MalI	GATC	2 cut(s)	32, 270
MbiI	CCGCTC	1 cut(s)	164
MboI	GATC	2 cut(s)	30, 268
MboII	GAAGA	5 cut(s)	278, 428, 625, 640, 829
MflI	RGATCY	2 cut(s)	30, 268
MhlI	GDGCHC	1 cut(s)	504
MlsI	TGGCCA	1 cut(s)	541
MluCI	AATT	3 cut(s)	25, 618, 841
MluI	ACGCGT	1 cut(s)	336
MluNI	TGGCCA	1 cut(s)	541
MlyI	GAGTC	1 cut(s)	745
MmeI	TCCRAC	3 cut(s)	58, 310, 696
Mox20I	TGGCCA	1 cut(s)	541
MroI	TCCGGA	2 cut(s)	425, 742
MscI	TGGCCA	1 cut(s)	541
MseI	TTAA	3 cut(s)	687, 794, 822
MslI	CAYNNNNRTG	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	541
MspR9I	CCNGG	4 cut(s)	263, 589, 646, 705
Mva1269I	GAATGC	2 cut(s)	211, 589
MvaI	CCWGG	1 cut(s)	646
MvnI	CGCG	2 cut(s)	209, 338
MwoI	GCNNNNNNNGC	2 cut(s)	400, 479
NciI	CCSGG	3 cut(s)	263, 589, 705
NdeII	GATC	2 cut(s)	30, 268
NlaIII	CATG	4 cut(s)	127, 418, 454, 818
NlaIV	GGNNCC	2 cut(s)	32, 571
NmeAIII	GCCGAG	2 cut(s)	81, 156
NmuCI	GTSAC	3 cut(s)	43, 193, 202
NspI	RCATGY	1 cut(s)	454
PagI	TCATGA	1 cut(s)	814
PceI	AGGCCT	1 cut(s)	649
PcsI	WCGNNNNNNNCGW	3 cut(s)	90, 108, 242
PctI	GAATGC	2 cut(s)	211, 589
PfeI	GAWTC	2 cut(s)	422, 604
PfoI	TCCNGGA	1 cut(s)	261
PkrI	GCNGC	4 cut(s)	107, 163, 484, 811
PleI	GAGTC	1 cut(s)	745
PpsI	GAGTC	1 cut(s)	745
Ppu21I	YACGTR	2 cut(s)	391, 669
Psp6I	CCWGG	1 cut(s)	644
PspGI	CCWGG	1 cut(s)	644
PspN4I	GGNNCC	2 cut(s)	32, 571
PspPI	GGNCC	2 cut(s)	19, 707
PsuI	RGATCY	2 cut(s)	30, 268
RsaI	GTAC	6 cut(s)	239, 389, 479, 637, 671, 866
RsaNI	GTAC	6 cut(s)	238, 388, 478, 636, 670, 865
RseI	CAYNNNNRTG	1 cut(s)	143
Rsr2I	CGGWCCG	1 cut(s)	707
RsrII	CGGWCCG	1 cut(s)	707
SaqAI	TTAA	3 cut(s)	687, 794, 822
SatI	GCNGC	4 cut(s)	106, 162, 483, 810
Sau3AI	GATC	2 cut(s)	30, 268
Sau96I	GGNCC	2 cut(s)	19, 707
SchI	GAGTC	1 cut(s)	745
ScrFI	CCNGG	4 cut(s)	263, 589, 646, 705
SduI	GDGCHC	1 cut(s)	504
SfaNI	GCATC	1 cut(s)	448
SinI	GGWCC	1 cut(s)	707
SmiMI	CAYNNNNRTG	1 cut(s)	143
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SnaBI	TACGTA	1 cut(s)	669
Sse9I	AATT	3 cut(s)	25, 618, 841
SseBI	AGGCCT	1 cut(s)	649
SsiI	CCGC	8 cut(s)	105, 141, 162, 207, 242, 251, 483, 623
SspI	AATATT	1 cut(s)	223
StuI	AGGCCT	1 cut(s)	649
StyD4I	CCNGG	4 cut(s)	261, 587, 644, 703
StyI	CCWWGG	1 cut(s)	546
TaaI	ACNGT	3 cut(s)	193, 199, 862
TaiI	ACGT	4 cut(s)	45, 393, 671, 794
TaqI	TCGA	1 cut(s)	456
TasI	AATT	3 cut(s)	25, 618, 841
TatI	WGTACW	1 cut(s)	864
TauI	GCSGC	3 cut(s)	108, 164, 485
TfiI	GAWTC	2 cut(s)	422, 604
Tru1I	TTAA	3 cut(s)	687, 794, 822
Tru9I	TTAA	3 cut(s)	687, 794, 822
TscAI	CASTG	2 cut(s)	511, 867
TseFI	GTSAC	3 cut(s)	43, 193, 202
TseI	GCWGC	1 cut(s)	809
Tsp45I	GTSAC	3 cut(s)	43, 193, 202
TspDTI	ATGAA	5 cut(s)	67, 387, 431, 503, 576
TspGWI	ACGGA	1 cut(s)	142
TspRI	CASTG	2 cut(s)	511, 867
VpaK11BI	GGWCC	1 cut(s)	707
XceI	RCATGY	1 cut(s)	454
XmiI	GTMKAC	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.